RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 GAPVD1Q14C86 1478 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 FAM240BA0A1B0GVZ2 78 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 EIF4E1BA6NMX2 242 aaKnown RBP3.87□□□□□ -1.79
HMGB1-204ENST00000399489 SMIM22K7EJ46 135 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 K7ERQ8 282 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 YKT6O15498 198 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 MSI1O43347 362 aaKnown RBP3.87□□□□□ -1.79
HMGB1-204ENST00000399489 UFL1O94874 794 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 STBD1O95210 358 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 LGI1O95970 557 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 MT-ND1P03886 318 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 PROS1P07225 676 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 EPCAMP16422 314 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 PCSK6P29122 969 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 MPGP29372 298 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 DLSTP36957 453 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 HSD17B3P37058 310 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 ACADVLP49748 655 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 CLCN4P51793 760 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 TUBA1BP68363 451 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 TRAF1Q13077 416 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 ITGADQ13349 1161 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 MAB21L1Q13394 359 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 STIM1Q13586 685 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 CUL1Q13616 776 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 CUL3Q13618 768 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 IL18Q14116 193 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 PTGISQ16647 500 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 PDLIM3Q53GG5 364 aaPredicted RBP3.87□□□□□ -1.79
HMGB1-204ENST00000399489 RNASE12Q5GAN4 147 aaKnown RBP3.87□□□□□ -1.79
HMGB1-204ENST00000399489 PCID2Q5JVF3 399 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 SPANXN2Q5MJ10 180 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 PXDC1Q5TGL8 231 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 PRAMEF17Q5VTA0 474 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 ANKRD54Q6NXT1 300 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 TUBA1AQ71U36 451 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 ZDHHC17Q8IUH5 632 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 CD302Q8IX05 232 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 GCNT2Q8N0V5 402 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 NECAB1Q8N987 351 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 SIDT2Q8NBJ9 832 aaKnown RBP3.87□□□□□ -1.79
HMGB1-204ENST00000399489 MCPH1Q8NEM0 835 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 CMASQ8NFW8 434 aaPredicted RBP3.87□□□□□ -1.79
HMGB1-204ENST00000399489 RDM1Q8NG50 284 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 OR9K2Q8NGE7 335 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 VANGL1Q8TAA9 524 aaPredicted RBP3.87□□□□□ -1.79
HMGB1-204ENST00000399489 SLC2A14Q8TDB8 520 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 CELF1Q92879 486 aaKnown RBP3.87□□□□□ -1.79
HMGB1-204ENST00000399489 SLC22A12Q96S37 553 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 CITED1Q99966 193 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 C11orf70Q9BRQ4 267 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 FNDC11Q9BVV2 318 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 TMEM39BQ9GZU3 492 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 TMEM165Q9HC07 324 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 HINT3Q9NQE9 182 aaKnown RBP3.87□□□□□ -1.79
HMGB1-204ENST00000399489 OSER1Q9NX31 292 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 ANKRD10Q9NXR5 420 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 DLL3Q9NYJ7 618 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 COPS7AQ9UBW8 275 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 SLC9A2Q9UBY0 812 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 MTRF1LQ9UGC7 380 aaKnown RBP3.87□□□□□ -1.79
HMGB1-204ENST00000399489 NOCTQ9UK39 431 aaKnown RBP3.87□□□□□ -1.79
HMGB1-204ENST00000399489 TNNQ9UQP3 1299 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 C15orf41Q9Y2V0 281 aa3.87□□□□□ -1.79
HMGB1-204ENST00000399489 EMSYQ7Z589 1322 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 ABCC8Q09428 1581 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 MAGEB16A2A368 324 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 TCP11X1B4DZS4 312 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 WASH3PC4AMC7 463 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 TMEM189-UBE2V1I3L0A0 370 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 CLIC1O00299 241 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 PDXKO00764 312 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 RNMTO43148 476 aaKnown RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 PSMD3O43242 534 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 KCNAB3O43448 404 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 AKR7A2O43488 359 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 WBP4O75554 376 aaKnown RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 NFATC1O95644 943 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 GNA14O95837 355 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 GSRP00390 522 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 NUDT17P0C025 328 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 SAGP10523 405 aaPredicted RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 SLC2A3P11169 496 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 F3P13726 295 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 U2AF2P26368 475 aaKnown RBP eCLIP3.86□□□□□ -1.791e-7■■■■■ 37.5
HMGB1-204ENST00000399489 PPP2R1AP30153 589 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 CHRNA5P30532 468 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 OR1D2P34982 312 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 CHI3L1P36222 383 aaPredicted RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 SYKP43405 635 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 FNTAP49354 379 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 CCL11P51671 97 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 NUDT6P53370 316 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 CLDN8P56748 225 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 SLC8A3P57103 927 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 CCZ1BP86790 482 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 CCZ1P86791 482 aaPredicted RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 BST1Q10588 318 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 UBE2V1Q13404 147 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms