RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ABHD13Q7L211 337 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 MAVSQ7Z434 540 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 ZC3H7AQ8IWR0 971 aaKnown RBP6.65□□□□□ -1.34
LIMA1-202ENST00000394943 RIMKLAQ8IXN7 391 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 CA13Q8N1Q1 262 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 CSNK1A1LQ8N752 337 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 SLC38A9Q8NBW4 561 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 ZNF740Q8NDX6 193 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 PYCR2Q96C36 320 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 OR6C1Q96RD1 312 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 EGFL8Q99944 293 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 CCDC28BQ9BUN5 200 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 EFHD1Q9BUP0 239 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 NLNQ9BYT8 704 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 ACPTQ9BZG2 426 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 MKKSQ9NPJ1 570 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-202ENST00000394943 CUTCQ9NTM9 273 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 SLC39A1Q9NY26 324 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 EXPH5Q8NEV8 1989 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 PCNX2A6NKB5 2137 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 TLDC2A0PJX2 215 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 PPP6CO00743 305 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 PLPP1O14494 284 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 AZIN1O14977 448 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 ITM2AO43736 263 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 BRINP1O60477 761 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 CNOT3O75175 753 aaKnown RBP6.65□□□□□ -1.34
LIMA1-202ENST00000394943 ETHE1O95571 254 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 PVRP15151 417 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 ZNF28P17035 718 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 HOXB9P17482 250 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-202ENST00000394943 NAGLUP54802 743 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 RAB38P57729 211 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 PHEXP78562 749 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 GPS2Q13227 327 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 UGT8Q16880 541 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 XKR6Q5GH73 641 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 WASHC2DQ5SRD0 308 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 H3F3CQ6NXT2 135 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 ZNF793Q6ZN11 406 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 MTERF3Q96E29 417 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 SCYL1Q96KG9 808 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 KCNC2Q96PR1 638 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 C12orf65Q9H3J6 166 aaKnown RBP6.65□□□□□ -1.34
LIMA1-202ENST00000394943 ZDHHC2Q9UIJ5 367 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 ANGPTL2Q9UKU9 493 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 TNRC6AQ8NDV7 1962 aaKnown RBP6.65□□□□□ -1.34
LIMA1-202ENST00000394943 A0A0C4DFX4 3053 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 PMS2P1A4D2B8 440 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 PRMT3O60678 531 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 EDF1O60869 148 aaKnown RBP6.65□□□□□ -1.35
LIMA1-202ENST00000394943 SLITRK5O94991 958 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 PDYNP01213 254 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 CHN1P15882 459 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 SLC5A2P31639 672 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 EIF2S3P41091 472 aaKnown RBP6.65□□□□□ -1.35
LIMA1-202ENST00000394943 ZFP36L2P47974 494 aaKnown RBP6.65□□□□□ -1.35
LIMA1-202ENST00000394943 SLC1A6P48664 564 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 EFNA3P52797 238 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 FOXA1P55317 472 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 GABREP78334 506 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 IRF8Q02556 426 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 EPGNQ6UW88 154 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 USP53Q70EK8 1073 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 MILR1Q7Z6M3 343 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 TMPRSS11BQ86T26 416 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 NUDCD3Q8IVD9 361 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 CPSF7Q8N684 471 aaKnown RBP6.65□□□□□ -1.35
LIMA1-202ENST00000394943 SREK1Q8WXA9 508 aaKnown RBP6.65□□□□□ -1.35
LIMA1-202ENST00000394943 MED8Q96G25 268 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 RUFY1Q96T51 708 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 SPSB2Q99619 263 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 MECRQ9BV79 373 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 SCNM1Q9BWG6 230 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 MANSC1Q9H8J5 431 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 MYNNQ9NPC7 610 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 SLC52A3Q9NQ40 469 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF639Q9UID6 485 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 CDC14AQ9UNH5 594 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 TRAF6Q9Y4K3 522 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 B3GALT1Q9Y5Z6 326 aa6.65□□□□□ -1.35
LIMA1-202ENST00000394943 CACNA1AO00555 2505 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 PABPN1LA6NDY0 278 aaKnown RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 TMEM150CB9EJG8 249 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 NDUFS4O43181 175 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 TLX3O43711 291 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 PSMG1O95456 288 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 ATP5A1P25705 553 aaKnown RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 TPP2P29144 1249 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 SOX18P35713 384 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 RGS1Q08116 209 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 BST1Q10588 318 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 AMZ1Q400G9 498 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 OR4C11Q6IEV9 310 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 CGB2Q6NT52 195 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 C6orf15Q6UXA7 325 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 OR2T11Q8NH01 316 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 MRRFQ96E11 262 aaKnown RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 TRIM45Q9H8W5 580 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 KCNK13Q9HB14 408 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms