RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SNTA1Q13424 505 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 GALEQ14376 348 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 C1orf52Q8N6N3 182 aaKnown RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 OSTF1Q92882 214 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 OTUB2Q96DC9 234 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 SIRPGQ9P1W8 387 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 SLC1A7O00341 560 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 RFPL3O75679 317 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 C7P10643 843 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 DPEP1P16444 411 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 PTPN6P29350 595 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 RBMXP38159 391 aaKnown RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 EN1Q05925 392 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 DUSP4Q13115 394 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 HNRNPDQ14103 355 aaKnown RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 RFTN1Q14699 578 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 PCBP1Q15365 356 aaKnown RBP eCLIP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 TXNRD3NBQ6F5E7 133 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 RGL4Q8IZJ4 473 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 OR51G2Q8NGK0 314 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 TMEM41AQ96HV5 264 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 CNTNAP3BQ96NU0 1288 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 FTHL17Q9BXU8 183 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 STUB1Q9UNE7 303 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 FRMPD1Q5SYB0 1578 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 VIRMAQ69YN4 1812 aaKnown RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 KIF20BQ96Q89 1820 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 M0R129 80 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 HPRP00739 348 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 MYF6P23409 242 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 BMP8BP34820 402 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 PRKXP51817 358 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 ST3GAL3Q11203 375 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 TIFABQ6ZNK6 161 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 BMP8AQ7Z5Y6 402 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 CEACAM19Q7Z692 300 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 TAC4Q86UU9 113 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 MMAAQ8IVH4 418 aaKnown RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF709Q8N972 641 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 NDNFQ8TB73 568 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 ATG5Q9H1Y0 275 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 COLEC10Q9Y6Z7 277 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 ADGRB3O60242 1522 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF705FA8MVS1 300 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 HCKP08631 526 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF705DP0CH99 300 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF705BP0CI00 300 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 NKX6-1P78426 367 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 SULT2A1Q06520 285 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 SSX2Q16385 188 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 DPYSL2Q16555 572 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 GTF2IRD2BQ6EKJ0 949 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 GTF2IRD2Q86UP8 949 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 VWA5B2Q8N398 1253 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 FIBCD1Q8N539 461 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 CLEC4CQ8WTT0 213 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 NELL2Q99435 816 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 PRMT8Q9NR22 394 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 TMEM45AQ9NWC5 275 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 FCF1Q9Y324 198 aaKnown RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 DUXAA6NLW8 204 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 PDHXO00330 501 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 CDK4P11802 303 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 GABARAPL2P60520 117 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 IL10RBQ08334 325 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 MINDY4Q4G0A6 757 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 FRG2Q64ET8 278 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 SFRP4Q6FHJ7 346 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 SHQ1Q6PI26 577 aaKnown RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 FRG2BQ96QU4 278 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 CACNG6Q9BXT2 260 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 MGAT4BQ9UQ53 548 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 E2F3O00716 465 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 POLR1CO15160 346 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF16P17020 682 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 PTNP21246 168 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 SOX2P48431 317 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 RABGGTBP53611 331 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 DYRK1AQ13627 763 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 GOLGA7Q7Z5G4 137 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 BOLLQ8N9W6 283 aaKnown RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 PPA2Q9H2U2 334 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 TEX13CA0A0J9YWL9 993 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 A0A1B0GVM2 712 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 PIK3CBP42338 1070 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 MLLT1Q03111 559 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-202ENST00000394243 SPIN4Q56A73 249 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF648Q5T619 568 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-202ENST00000394243 RIT1Q92963 219 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 PTERQ96BW5 349 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 LRCH3Q96II8 777 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 CYP2S1Q96SQ9 504 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 GPR22Q99680 433 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 RBCK1Q9BYM8 510 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 SLC32A1Q9H598 525 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 RPS10P5Q9NQ39 176 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 ACSL5Q9ULC5 683 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 TSTD3H0UI37 97 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms