RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 BPHLQ86WA6 291 aaPredicted RBP13.36□□□□□ -0.27
SDC1-202ENST00000381150 NPAS4Q8IUM7 802 aa13.36□□□□□ -0.27
SDC1-202ENST00000381150 SIMC1Q8NDZ2 872 aa13.36□□□□□ -0.27
SDC1-202ENST00000381150 MDGA1Q8NFP4 955 aa13.36□□□□□ -0.27
SDC1-202ENST00000381150 OR6K2Q8NGY2 324 aa13.36□□□□□ -0.27
SDC1-202ENST00000381150 CD200R1Q8TD46 325 aa13.36□□□□□ -0.27
SDC1-202ENST00000381150 SDHCQ99643 169 aaPredicted RBP13.36□□□□□ -0.27
SDC1-202ENST00000381150 TMEM175Q9BSA9 504 aa13.36□□□□□ -0.27
SDC1-202ENST00000381150 C11orf54Q9H0W9 315 aaPredicted RBP13.36□□□□□ -0.27
SDC1-202ENST00000381150 TRIM45Q9H8W5 580 aaPredicted RBP13.36□□□□□ -0.27
SDC1-202ENST00000381150 ANKHQ9HCJ1 492 aa13.36□□□□□ -0.27
SDC1-202ENST00000381150 NLE1Q9NVX2 485 aaPredicted RBP13.36□□□□□ -0.27
SDC1-202ENST00000381150 BTN3A3O00478 584 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 CAPN5O15484 640 aaPredicted RBP13.35□□□□□ -0.27
SDC1-202ENST00000381150 EPN2O95208 641 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 SDHBP21912 280 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 ELAVL2Q12926 359 aaKnown RBP13.35□□□□□ -0.27
SDC1-202ENST00000381150 DGKKQ5KSL6 1271 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 AFTPHQ6ULP2 937 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 FAM109AQ8N4B1 249 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 C19orf18Q8NEA5 215 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 FLCNQ8NFG4 579 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 LRRC20Q8TCA0 184 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 COL21A1Q96P44 957 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 COPS8Q99627 209 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 HDHD5Q9BXW7 423 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 SLA2Q9H6Q3 261 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 POPDC3Q9HBV1 291 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 PSORS1C1Q9UIG5 152 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 ARHGAP33O14559 1287 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 COCHO43405 550 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 SOX14O95416 240 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 CD160O95971 181 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 OGNP20774 298 aaKnown RBP13.35□□□□□ -0.27
SDC1-202ENST00000381150 ACVR2AP27037 513 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 NOGQ13253 232 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 LINGO4Q6UY18 593 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 TAGAPQ8N103 731 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 DNAJC22Q8N4W6 341 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 KIAA1958Q8N8K9 716 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 OR10G2Q8NGC3 310 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 RASSF5Q8WWW0 418 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 WBP2Q969T9 261 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 CINPQ9BW66 212 aaPredicted RBP13.35□□□□□ -0.27
SDC1-202ENST00000381150 CFHR5Q9BXR6 569 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 SLC22A4Q9H015 551 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 TMEM184CQ9NVA4 438 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 NLKQ9UBE8 527 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 NEUROG3Q9Y4Z2 214 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 ANAPC1Q9H1A4 1944 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 HMX3A6NHT5 357 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 IFRD1O00458 451 aaPredicted RBP13.35□□□□□ -0.27
SDC1-202ENST00000381150 ITGA2P17301 1181 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 RPL17P18621 184 aaKnown RBP13.35□□□□□ -0.27
SDC1-202ENST00000381150 PTGS2P35354 604 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 DDOSTP39656 456 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 CRATP43155 626 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 VEPH1Q14D04 833 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 ZC3H12BQ5HYM0 836 aaKnown RBP13.35□□□□□ -0.27
SDC1-202ENST00000381150 LIPKQ5VXJ0 399 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 ZSWIM9Q86XI8 627 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 DENND1CQ8IV53 801 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 STK40Q8N2I9 435 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 RAET1EQ8TD07 263 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 MSANTD3Q96H12 275 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 NIPSNAP1Q9BPW8 284 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 GPR63Q9BZJ6 419 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 RPS6KA6Q9UK32 745 aa13.35□□□□□ -0.27
SDC1-202ENST00000381150 FAM240BA0A1B0GVZ2 78 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 SUV39H1O43463 412 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 GPX5O75715 221 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 KRT6AP02538 564 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 C9P02748 559 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 KRT6BP04259 564 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 CLEC2LP0C7M8 214 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 COX7A2P14406 83 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 RPS3P23396 243 aaKnown RBP eCLIP13.34□□□□□ -0.275e-11■■■■□ 21
SDC1-202ENST00000381150 HOXD10P28358 340 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 UGT2B10P36537 528 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 ABHD18Q0P651 414 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 ZNF551Q7Z340 670 aaPredicted RBP13.34□□□□□ -0.27
SDC1-202ENST00000381150 BCDIN3DQ7Z5W3 292 aaKnown RBP13.34□□□□□ -0.27
SDC1-202ENST00000381150 SYT12Q8IV01 421 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 GKN1Q9NS71 199 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 DNAJC27Q9NZQ0 273 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 SH3BP4Q9P0V3 963 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 TMPRSS11EQ9UL52 423 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 LOC105371267A0A1B0GV96 52 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 H3BN98 237 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 STC2O76061 302 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 ESR1P03372 595 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 BMP1P13497 986 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 EPB42P16452 691 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 HOXB8P17481 243 aaPredicted RBP13.34□□□□□ -0.27
SDC1-202ENST00000381150 KIR3DL1P43629 444 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 NRIP1P48552 1158 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 HNRNPA0Q13151 305 aaKnown RBP13.34□□□□□ -0.27
SDC1-202ENST00000381150 CDH18Q13634 790 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 TBCEQ15813 527 aaPredicted RBP13.34□□□□□ -0.27
SDC1-202ENST00000381150 FXNQ16595 210 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms