RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 EPHB6O15197 1021 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 CRCPO75575 148 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 MOCS2O96007 188 aaPredicted RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 HMOX1P09601 288 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 TRIM49P0CI25 452 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 TRIM49CP0CI26 452 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 PIK3R1P27986 724 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 SERPINB6P35237 376 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 ADARP55265 1226 aaKnown RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 SNU13P55769 128 aaKnown RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 NME5P56597 212 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 IL10RBQ08334 325 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 NFATC2Q13469 925 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 RAPSNQ13702 412 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 OPCMLQ14982 345 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 EXT1Q16394 746 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 SLC39A12Q504Y0 691 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 LCN1P1Q5VSP4 162 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 TTC27Q6P3X3 843 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 FUT10Q6P4F1 479 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 TMEM270Q6UE05 265 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 RAPH1Q70E73 1250 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 ANKRD46Q86W74 232 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 MEX3DQ86XN8 651 aaKnown RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 CCDC83Q8IWF9 413 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 AQP12AQ8IXF9 295 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 LSMEM2Q8N112 164 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 LRTM2Q8N967 370 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 NAT8LQ8N9F0 302 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 Q8NBF4 154 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 AQP11Q8NBQ7 271 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 OR7A2PQ8NGA2 310 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 MIPOL1Q8TD10 442 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 C4orf45Q96LM5 186 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 NSMCE3Q96MG7 304 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 USP28Q96RU2 1077 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 ATG101Q9BSB4 218 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 SLC5A7Q9GZV3 580 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 SDCBP2Q9H190 292 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 RNF121Q9H920 327 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 IL1RAPL2Q9NP60 686 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 TMEM161AQ9NX61 479 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 SLCO1C1Q9NYB5 712 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 GPR132Q9UNW8 380 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 TRAV18A0A075B6X5 111 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 A0A0A6YYC8 382 aaPredicted RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 TRBV5-5A0A0J9YX44 114 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 SNURFLB1AK76 121 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 E5RGE8 158 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 H3BMM5 538 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 I3L1I5 382 aaPredicted RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 TTI1O43156 1089 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 IDH3BO43837 385 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 UROSP10746 265 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 GOT1P17174 413 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 CETN2P41208 172 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 FRKP42685 505 aaPredicted RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 OR3A1P47881 315 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 DNA2P51530 1060 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 STX1BP61266 288 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 MORF4L2Q15014 288 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 DDX59Q5T1V6 619 aaKnown RBP eCLIP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 OR4C11Q6IEV9 310 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 G2E3Q7L622 706 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 SPC24Q8NBT2 197 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 PIK3R3Q92569 461 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 SLCO2A1Q92959 643 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 RBM41Q96IZ5 413 aaKnown RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 CCDC43Q96MW1 224 aaKnown RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 ZNF559Q9BR84 538 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 RAB11FIP5Q9BXF6 653 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 MRPL9Q9BYD2 267 aaKnown RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 CUEDC2Q9H467 287 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 RAVER2Q9HCJ3 691 aaKnown RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 PPANQ9NQ55 473 aaKnown RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 PRR34Q9NV39 138 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 C19orf25Q9UFG5 118 aaPredicted RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 NOCTQ9UK39 431 aaKnown RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 PA2G4Q9UQ80 394 aaKnown RBP1.82□□□□□ -2.12
VPS13A-206ENST00000376646 NSG2Q9Y328 171 aa1.82□□□□□ -2.12
VPS13A-206ENST00000376646 A0A1W2PNU3 283 aaPredicted RBP1.81□□□□□ -2.12
VPS13A-206ENST00000376646 SRRM5B3KS81 715 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 H0YIG0 161 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 O00370 1275 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 KINO60870 393 aaKnown RBP1.81□□□□□ -2.12
VPS13A-206ENST00000376646 GLRA3O75311 464 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 CDK2AP2O75956 126 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 ATP1B1P05026 303 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 C8orf89P0DMQ9 161 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 GP1BBP13224 206 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 CTNNB1P35222 781 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 MAGEB1P43366 347 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 AKAP17AQ02040 695 aaKnown RBP1.81□□□□□ -2.12
VPS13A-206ENST00000376646 UBXN1Q04323 297 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 ACTN3Q08043 901 aaPredicted RBP1.81□□□□□ -2.12
VPS13A-206ENST00000376646 AP1B1Q10567 949 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 ABRQ12979 859 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 CALCOCO2Q13137 446 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 MTF1Q14872 753 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 ZNF542PQ5EBM4 170 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms