RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 RASGRP3Q8IV61 690 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 RAVER1Q8IY67 606 aaKnown RBP13.74□□□□□ -0.21
HMGA1-203ENST00000374116 SLC29A3Q9BZD2 475 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 TMEM168Q9H0V1 697 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 ARMC7Q9H6L4 198 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 NANOGQ9H9S0 305 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 CARS2Q9HA77 564 aaKnown RBP13.74□□□□□ -0.21
HMGA1-203ENST00000374116 PARVBQ9HBI1 364 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 EIF3LQ9Y262 564 aaKnown RBP13.74□□□□□ -0.21
HMGA1-203ENST00000374116 CDX4O14627 284 aaPredicted RBP13.74□□□□□ -0.21
HMGA1-203ENST00000374116 ANKRD28O15084 1053 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 ULK1O75385 1050 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 STK16O75716 305 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 RSL1D1O76021 490 aaKnown RBP13.74□□□□□ -0.21
HMGA1-203ENST00000374116 RASGRP1O95267 797 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 FCGR1AP12314 374 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 GGT5P36269 586 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 CASP2P42575 452 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 GDF5P43026 501 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 CTSCP53634 463 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 TMBIM6P55061 237 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 YBX1P67809 324 aaKnown RBP13.74□□□□□ -0.21
HMGA1-203ENST00000374116 ATP1A4Q13733 1029 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 CSRP2Q16527 193 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 FXNQ16595 210 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 NRF1Q16656 503 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 UAP1L1Q3KQV9 507 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 RFTN2Q52LD8 501 aaPredicted RBP13.74□□□□□ -0.21
HMGA1-203ENST00000374116 RABL3Q5HYI8 236 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 INTS11Q5TA45 600 aaKnown RBP13.74□□□□□ -0.21
HMGA1-203ENST00000374116 AGAP7PQ5VUJ5 663 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 ZBTB49Q6ZSB9 765 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 TRIM46Q7Z4K8 759 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 RABEPKQ7Z6M1 372 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 PROSER1Q86XN7 944 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 TCAIMQ8N3R3 496 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 RASGEF1AQ8N9B8 481 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 PNPT1Q8TCS8 783 aaKnown RBP13.74□□□□□ -0.21
HMGA1-203ENST00000374116 VPS35Q96QK1 796 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 ELF4Q99607 663 aaPredicted RBP13.74□□□□□ -0.21
HMGA1-203ENST00000374116 EDEM2Q9BV94 578 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 ACTL8Q9H568 366 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 FAM8A1Q9UBU6 413 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 KLHL3Q9UH77 587 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 AURKCQ9UQB9 309 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 GPSM3Q9Y4H4 160 aa13.74□□□□□ -0.21
HMGA1-203ENST00000374116 POLR3HQ9Y535 204 aaPredicted RBP13.74□□□□□ -0.21
HMGA1-203ENST00000374116 A0A1W2PPW3 197 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 CPNE6O95741 557 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 C8GP07360 202 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 SYPP08247 313 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 SLC2A4P14672 509 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 FASP25445 335 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 GSSP48637 474 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 RPIAP49247 311 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 CDH15P55291 814 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 CAMK2BQ13554 666 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 PRRT3Q5FWE3 981 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 CHST15Q7LFX5 561 aaPredicted RBP13.73□□□□□ -0.21
HMGA1-203ENST00000374116 PHACTR4Q8IZ21 702 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 ADGRG5Q8IZF4 528 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 FAM47BQ8NA70 645 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 TRPV3Q8NET8 790 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 ASB11Q8WXH4 323 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 TAMM41Q96BW9 452 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 ZBTB18Q99592 522 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 CIB1Q99828 191 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 SLC12A9Q9BXP2 914 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 SLC32A1Q9H598 525 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 TRIM39Q9HCM9 518 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 AGPAT4Q9NRZ5 378 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 ASIC5Q9NY37 505 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 APOBEC3BQ9UH17 382 aaKnown RBP13.73□□□□□ -0.21
HMGA1-203ENST00000374116 ERVK-11Q9UQG0 969 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 SLC17A4Q9Y2C5 497 aa13.73□□□□□ -0.21
HMGA1-203ENST00000374116 GFYI3L273 518 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 MANBAO00462 879 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 AP2A2O94973 939 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 CSF2P04141 144 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 MPC1LP0DKB6 136 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 JUNBP17275 347 aaPredicted RBP13.72□□□□□ -0.21
HMGA1-203ENST00000374116 AK4P27144 223 aaPredicted RBP13.72□□□□□ -0.21
HMGA1-203ENST00000374116 TEAD1P28347 426 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 PBLDP30039 288 aaPredicted RBP13.72□□□□□ -0.21
HMGA1-203ENST00000374116 CCT8P50990 548 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 NFATC3Q12968 1075 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 PWP1Q13610 501 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 RAB39AQ14964 217 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 ZXDCQ2QGD7 858 aaPredicted RBP13.72□□□□□ -0.21
HMGA1-203ENST00000374116 TRIM16LQ309B1 348 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 PLEKHS1Q5SXH7 462 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 XKR5Q6UX68 686 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 DLEU7Q6UYE1 221 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 IFNEQ86WN2 208 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 ZNF547Q8IVP9 402 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 SFTPA2Q8IWL1 248 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 GLB1L3Q8NCI6 653 aaPredicted RBP13.72□□□□□ -0.21
HMGA1-203ENST00000374116 HBEGFQ99075 208 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 SLC29A1Q99808 456 aa13.72□□□□□ -0.21
HMGA1-203ENST00000374116 INTS7Q9NVH2 962 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms