RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CD38P28907 300 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 HPCAL1P37235 193 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 GZMMP51124 257 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 RPL6Q02878 288 aaKnown RBP13.17□□□□□ -0.3
PTPRF-202ENST00000372405 DMWDQ09019 674 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 ZIC1Q15915 447 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 MPEG1Q2M385 716 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 LPCAT4Q643R3 524 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 SPAG17Q6Q759 2223 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 TAF8Q7Z7C8 310 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 DTWD1Q8N5C7 304 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 CAMKK1Q8N5S9 505 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 AMER3Q8N944 861 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 MFSD2AQ8NA29 543 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 C1orf216Q8TAB5 229 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 SLC37A2Q8TED4 501 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 CANT1Q8WVQ1 401 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 OR2A14Q96R47 310 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 PKP2Q99959 881 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 THUMPD3Q9BV44 507 aaKnown RBP13.17□□□□□ -0.3
PTPRF-202ENST00000372405 REEP4Q9H6H4 257 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 RPF2Q9H7B2 306 aaKnown RBP13.17□□□□□ -0.3
PTPRF-202ENST00000372405 COPS7BQ9H9Q2 264 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-202ENST00000372405 ARHGAP10A1A4S6 786 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 LRIT2A6NDA9 550 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 AQP12BA6NM10 295 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 IL3P08700 152 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 JUNDP17535 347 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 CMPK1P30085 196 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 SLC7A1P30825 629 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 TRPC1P48995 793 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 TRIM73Q86UV7 250 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 CALHM3Q86XJ0 350 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 AQP12AQ8IXF9 295 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 TMEM132CQ8N3T6 1108 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 ZNF548Q8NEK5 533 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-202ENST00000372405 FAM174AQ8TBP5 190 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 STARD8Q92502 1023 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 LRGUKQ96M69 825 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 CCDC115Q96NT0 180 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 GBP5Q96PP8 586 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 PANX1Q96RD7 426 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 ECSITQ9BQ95 431 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 PCED1AQ9H1Q7 454 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 MUC13Q9H3R2 512 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 KLHL31Q9H511 634 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 CD320Q9NPF0 282 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 POT1Q9NUX5 634 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 C6orf203Q9P0P8 240 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-202ENST00000372405 APOBEC3BQ9UH17 382 aaKnown RBP13.16□□□□□ -0.3
PTPRF-202ENST00000372405 SIT1Q9Y3P8 196 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 AP4S1Q9Y587 144 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 CTSEP14091 401 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 C2orf80Q0P641 193 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 PLCL1Q15111 1095 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 LRRC36Q1X8D7 754 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 CCNYL2Q5T2Q4 361 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 GPR155Q7Z3F1 870 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 PAQR7Q86WK9 346 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 TRIM48Q8IWZ4 208 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 TMEM102Q8N9M5 508 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-202ENST00000372405 ZFPM2Q8WW38 1151 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 HSPA12BQ96MM6 686 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 TEFMQ96QE5 360 aaKnown RBP13.16□□□□□ -0.3
PTPRF-202ENST00000372405 TM9SF3Q9HD45 589 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 SH3BP4Q9P0V3 963 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 BTNL2Q9UIR0 455 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 MAPRE3Q9UPY8 281 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 PCDHGA4Q9Y5G9 962 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 AP1M2Q9Y6Q5 423 aa13.16□□□□□ -0.3
PTPRF-202ENST00000372405 SDK1Q7Z5N4 2213 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 KIR2DS5A0A0G2JLQ3 304 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 A0A0G2JN53 185 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 A0A0G2JNG1 304 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 OR6C74A6NCV1 312 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 KIR2DS3K7RE56 304 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 TMPRSS11DO60235 418 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 CCNDBP1O95273 360 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 VIPP01282 170 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 CSF2P04141 144 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 SERPIND1P05546 499 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 UGT2B7P16662 529 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 POLR2CP19387 275 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-202ENST00000372405 CXCL12P48061 93 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 BLKP51451 505 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 RACK1P63244 317 aaKnown RBP13.15□□□□□ -0.3
PTPRF-202ENST00000372405 KIR2DS3Q14952 304 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 KIR2DS5Q14953 304 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 TRIP10Q15642 601 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 ADPRMQ3LIE5 342 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 ZNF793Q6ZN11 406 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 ADGRG5Q8IZF4 528 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 OR2T12Q8NG77 320 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 CIDECQ96AQ7 238 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-202ENST00000372405 RGMAQ96B86 450 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 TM4SF18Q96CE8 201 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 ZNF570Q96NI8 536 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 FCRL4Q96PJ5 515 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 TBCDQ9BTW9 1192 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 BHLHE41Q9C0J9 482 aaPredicted RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms