RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PCSK6P29122 969 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 IMPA1P29218 277 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 TYK2P29597 1187 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 MSX2P35548 267 aaPredicted RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 TRIM23P36406 574 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 MAP3K8P41279 467 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 PTGER3P43115 390 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 TUFMP49411 452 aaKnown RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 PRLHRP49683 370 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 CLCN2P51788 898 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 ATP6V0D1P61421 351 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 COG7P83436 770 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 PPP2R2BQ00005 443 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 TFF2Q03403 129 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 DUSP2Q05923 314 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 TRAP1Q12931 704 aaKnown RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 PRKAA1Q13131 559 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 MTA1Q13330 715 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 CSHL1Q14406 222 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 CHRNA6Q15825 494 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 RNF151Q2KHN1 245 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 HKDC1Q2TB90 917 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 TMEM52BQ4KMG9 183 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 ARHGAP15Q53QZ3 475 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 FAM78AQ5JUQ0 283 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 RNF220Q5VTB9 566 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 ATG16L1Q676U5 607 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 RWDD4Q6NW29 188 aaKnown RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 KDELC2Q7Z4H8 507 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 SNX20Q7Z614 316 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 DHDDSQ86SQ9 333 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 NRROSQ86YC3 692 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 GALNT13Q8IUC8 556 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 CPNE9Q8IYJ1 553 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 KIRREL3Q8IZU9 778 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 CLDN19Q8N6F1 224 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 ANKRD53Q8N9V6 530 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 LINC01555Q8NAE3 123 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 PPHLN1Q8NEY8 458 aaKnown RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 OR4F6Q8NGB9 312 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 OR4C15Q8NGM1 316 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 OR14K1Q8NGZ2 314 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 PHOSPHO2Q8TCD6 241 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 PYDC1Q8WXC3 89 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 CFHR4Q92496 578 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 SGCDQ92629 289 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 ESAMQ96AP7 390 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 KLHL29Q96CT2 875 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 LRIG1Q96JA1 1093 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 TIMP4Q99727 224 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 GDF15Q99988 308 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 ECSITQ9BQ95 431 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 AMBRA1Q9C0C7 1298 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 WWP1Q9H0M0 922 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 GABARAPL1Q9H0R8 117 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 NSUN3Q9H649 340 aaKnown RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 EPHX3Q9H6B9 360 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 ZNF696Q9H7X3 374 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 KAT8Q9H7Z6 458 aaKnown RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 BPIFA1Q9NP55 256 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 SPHK2Q9NRA0 654 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 C2orf42Q9NWW7 574 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 NKIRAS1Q9NYS0 192 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 SPG21Q9NZD8 308 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 BFARQ9NZS9 450 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 VAPAQ9P0L0 249 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 UBA2Q9UBT2 640 aaPredicted RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 SLC23A2Q9UGH3 650 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 PRPF19Q9UMS4 504 aaKnown RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 ERVW-1Q9UQF0 538 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 CELSR1Q9NYQ6 3014 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 HEPACAM2A8MVW5 462 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 F2RL2O00254 374 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 EIF3FO00303 357 aaPredicted RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 FRS3O43559 492 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 DIAPH2O60879 1101 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 LYPD3O95274 346 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 EML2O95834 649 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 CLPSP04118 112 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 AMD1P17707 334 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 EEF1DP29692 281 aaKnown RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 PDHA2P29803 388 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 MAN2A2P49641 1150 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 CDH13P55290 713 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 OR4D2P58180 307 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 AP1S1P61966 158 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 IRX4P78413 519 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 IRX1P78414 480 aaPredicted RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 SEMG2Q02383 582 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 TLE1Q04724 770 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 CACNG1Q06432 222 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 HYAL1Q12794 435 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 LCP2Q13094 533 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 THOC5Q13769 683 aaKnown RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 RCN1Q15293 331 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 CTU2Q2VPK5 515 aaKnown RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 TRMT5Q32P41 509 aaKnown RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 PABPC1LQ4VXU2 614 aaKnown RBP2.22□□□□□ -2.05
VPS54-202ENST00000354504 RUNDC3AQ59EK9 446 aa2.22□□□□□ -2.05
VPS54-202ENST00000354504 FAM209BQ5JX69 171 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms