RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 NTMT1Q9BV86 223 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 TRIM62Q9BVG3 475 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CHST8Q9H2A9 424 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 GALNT9Q9HCQ5 603 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CNOT2Q9NZN8 540 aaKnown RBP6.54□□□□□ -1.36
VPS39-202ENST00000348544 POFUT2Q9Y2G5 429 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 NLRC5Q86WI3 1866 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 HYKKA2RU49 373 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 MOXD2PA6NHM9 499 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SNTNA6NMZ2 147 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 WASHC1A8K0Z3 465 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 A8MUA0 341 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 PDPK1O15530 556 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 GALR2O43603 387 aaPredicted RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 PLOD3O60568 738 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 TPST2O60704 377 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 TRIM3O75382 744 aaPredicted RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 SLC22A5O76082 557 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 CCNB2O95067 398 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 OPN1SWP03999 348 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 HBQ1P09105 142 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 C1SP09871 688 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 TSPAN19P0C672 248 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 RPS3P23396 243 aaKnown RBP eCLIP6.53□□□□□ -1.36
VPS39-202ENST00000348544 APEX1P27695 318 aaKnown RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 KIR3DL1P43629 444 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 MAP2K3P46734 347 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 OR1E2P47887 323 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SLC9A3P48764 834 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 CDH12P55289 794 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 RUNX1T1Q06455 604 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 MTAPQ13126 283 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 HNRNPA0Q13151 305 aaKnown RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 DSC3Q14574 896 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 MFSD13AQ14CX5 517 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 PTGES3Q15185 160 aaKnown RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 UGT8Q16880 541 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 PYDC2Q56P42 97 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 PDZK1Q5T2W1 519 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 PAQR6Q6TCH4 344 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 PLET1Q6UQ28 207 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 ZNF621Q6ZSS3 439 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 WDR53Q7Z5U6 358 aaPredicted RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 KCTD20Q7Z5Y7 419 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 ATP6V1C2Q8NEY4 427 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 LPCAT1Q8NF37 534 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 TRPM4Q8TD43 1214 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 LPPQ93052 612 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 APIPQ96GX9 242 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 C8orf48Q96LL4 319 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SERPINB11Q96P15 392 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 DCLRE1CQ96SD1 692 aaKnown RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 EGFL8Q99944 293 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 TRAF4Q9BUZ4 470 aaPredicted RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 ACAT2Q9BWD1 397 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 KATNBL1Q9H079 304 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 TMEM245Q9H330 911 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 B3GAT2Q9NPZ5 323 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 NDUFB11Q9NX14 153 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 WWOXQ9NZC7 414 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 NLKQ9UBE8 527 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 FTSJ1Q9UET6 329 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 ELF5Q9UKW6 265 aaPredicted RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 STUB1Q9UNE7 303 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 VPS9D1Q9Y2B5 631 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 TLR6Q9Y2C9 796 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 OARD1Q9Y530 152 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 GJA3Q9Y6H8 435 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 A0A0D9SEW6 157 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 C2orf81A6NN90 581 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 MAGEB17A8MXT2 336 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 J3KTA2 159 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SUV39H1O43463 412 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 TSC22D2O75157 780 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 ENTPD6O75354 484 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 EPN2O95208 641 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 CPSF4O95639 269 aaKnown RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 APBA3O96018 575 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 IGHA2P01877 340 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 EBLN1P0CF75 366 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SMIM10L2AP0DMW4 78 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SMIM10L2BP0DMW5 78 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 HLA-EP13747 358 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 LPOP22079 712 aaPredicted RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 RPS12P25398 132 aaKnown RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 ETV3P41162 512 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 PER3P56645 1201 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 TBX4P57082 545 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 RRAS2P62070 204 aaPredicted RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 RHAGQ02094 409 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.53□□□□□ -1.36
VPS39-202ENST00000348544 VEZF1Q14119 521 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 NFE2L1Q14494 772 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 PCBP1Q15365 356 aaKnown RBP eCLIP6.53□□□□□ -1.36
VPS39-202ENST00000348544 MICAQ29983 383 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 LCN1P1Q5VSP4 162 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SDHAF4Q5VUM1 108 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 ANKS3Q6ZW76 656 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 ZNF598Q86UK7 904 aaKnown RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms