RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 DICER1Q9UPY3 1922 aaKnown RBP13.85□□□□□ -0.19
COL7A1-201ENST00000328333 IFNGR1P15260 489 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 ENTPD1P49961 510 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 PTPN20Q4JDL3 420 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 TMEM145Q8NBT3 493 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 OR52E4Q8NGH9 312 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 UBR2Q8IWV8 1755 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 ATP6V1G2-DDX39BF2Z307 99 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 J3QRK9 145 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 FAAHO00519 579 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 CXCR1P25024 350 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 GSK3BP49841 420 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 FBXL8Q96CD0 374 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 FAM163AQ96GL9 167 aaPredicted RBP13.85□□□□□ -0.19
COL7A1-201ENST00000328333 EBPLQ9BY08 206 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 TTYH3Q9C0H2 523 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 CSDE1O75534 798 aaKnown RBP13.85□□□□□ -0.19
COL7A1-201ENST00000328333 OXTRP30559 389 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 GANABQ14697 944 aaKnown RBP13.85□□□□□ -0.19
COL7A1-201ENST00000328333 ZNF416Q9BWM5 594 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 SDHAF3Q9NRP4 125 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 SOBPA7XYQ1 873 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 SC5DO75845 299 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 FARS2O95363 451 aaKnown RBP13.85□□□□□ -0.19
COL7A1-201ENST00000328333 ETFAP13804 333 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 MYF6P23409 242 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 PTGIRP43119 386 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 TMEM205Q6UW68 189 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 KCTD9Q7L273 389 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 PLD6Q8N2A8 252 aaKnown RBP13.85□□□□□ -0.19
COL7A1-201ENST00000328333 MRPS30Q9NP92 439 aaKnown RBP13.85□□□□□ -0.19
COL7A1-201ENST00000328333 OR1F1O43749 312 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 GRM5P41594 1212 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 OR1J4Q8NGS1 313 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 KCTD13Q8WZ19 329 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 PGAP3Q96FM1 320 aaPredicted RBP13.85□□□□□ -0.19
COL7A1-201ENST00000328333 C14orf28Q4W4Y0 310 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 GON7Q9BXV9 100 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 MOXD2PA6NHM9 499 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 CREG1O75629 220 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 PIAS1O75925 651 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 PRSS48Q7RTY5 328 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 LCN9Q8WX39 176 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 RIPOR3Q96MK2 946 aa13.85□□□□□ -0.19
COL7A1-201ENST00000328333 SNAP29O95721 258 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 CSNK2A2P19784 350 aaPredicted RBP13.84□□□□□ -0.19
COL7A1-201ENST00000328333 FNTBP49356 437 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 BLKP51451 505 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 WDR45BQ5MNZ6 344 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 GSG1LQ6UXU4 331 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 ZER1Q7Z7L7 766 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 FOXRED2Q8IWF2 684 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 ZSCAN4Q8NAM6 433 aaPredicted RBP13.84□□□□□ -0.19
COL7A1-201ENST00000328333 ANKRD33BA6NCL7 494 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 STMND1H3BQB6 276 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 PLATP00750 562 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 OVCA2Q8WZ82 227 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 UQCC2Q9BRT2 126 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 LRFN1Q9P244 771 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 MST1RQ04912 1400 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 A8MXE2 369 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 CNTN5O94779 1100 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 FRKP42685 505 aaPredicted RBP13.84□□□□□ -0.19
COL7A1-201ENST00000328333 KCTD18Q6PI47 426 aaPredicted RBP13.84□□□□□ -0.19
COL7A1-201ENST00000328333 CNOT9Q92600 299 aaKnown RBP13.84□□□□□ -0.19
COL7A1-201ENST00000328333 NID2Q14112 1375 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 A0A0G2JLW4 131 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 TVP23AA6NH52 213 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 EEDO75530 441 aaKnown RBP13.84□□□□□ -0.19
COL7A1-201ENST00000328333 GOT2P00505 430 aaKnown RBP13.84□□□□□ -0.19
COL7A1-201ENST00000328333 TIFABQ6ZNK6 161 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 GTPBP8Q8N3Z3 284 aaPredicted RBP13.84□□□□□ -0.19
COL7A1-201ENST00000328333 MS4A15Q8N5U1 240 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 ORAI3Q9BRQ5 295 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 IDI2Q9BXS1 227 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 NKX1-2Q9UD57 310 aaPredicted RBP13.84□□□□□ -0.19
COL7A1-201ENST00000328333 DNAJC5BQ9UF47 199 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 EMX2Q04743 252 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 CYBRD1Q53TN4 286 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 KRBOX4Q5JUW0 171 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 ABCG5Q9H222 651 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 PRAMEF2O60811 474 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 PIRTP0C851 137 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 HLCSP50747 726 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 SMAD3P84022 425 aaKnown RBP13.84□□□□□ -0.19
COL7A1-201ENST00000328333 OR13J1Q8NGT2 312 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 PROKR1Q8TCW9 393 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 ACER1Q8TDN7 264 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 PYCR2Q96C36 320 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 TMLHEQ9NVH6 421 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 TIMM13Q9Y5L4 95 aaPredicted RBP13.84□□□□□ -0.19
COL7A1-201ENST00000328333 A0A1W2PQ45 241 aaPredicted RBP13.84□□□□□ -0.19
COL7A1-201ENST00000328333 A0A1W2PQY0 241 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 FAM155BO75949 473 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 SLC34A2O95436 690 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 RAB3BP20337 219 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 CRYBB1P53674 252 aaPredicted RBP13.84□□□□□ -0.19
COL7A1-201ENST00000328333 IKBKEQ14164 716 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 PROX2Q3B8N5 592 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 HACD2Q6Y1H2 254 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms