RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 MAGEB17A8MXT2 336 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 TMEM114B3SHH9 223 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 TGFB1P01137 390 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 ATXN8OSP0DMR3 200 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 CHN1P15882 459 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 DCDP81605 110 aaKnown RBP23.27■■□□□ 1.32
HOXC9-201ENST00000303450 STX3Q13277 289 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 HERC3Q15034 1050 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 PRMT9Q6P2P2 845 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 CHSY3Q70JA7 882 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 DTX1Q86Y01 620 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 TRIM42Q8IWZ5 723 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 CACNA2D3Q8IZS8 1091 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 MS4A8Q9BY19 250 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 ANKHQ9HCJ1 492 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 WDR70Q9NW82 654 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 CDC14AQ9UNH5 594 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 TIMM22Q9Y584 194 aa23.27■■□□□ 1.32
HOXC9-201ENST00000303450 SCN3AQ9NY46 2000 aa23.26■■□□□ 1.31
HOXC9-201ENST00000303450 A0A0A6YYC8 382 aaPredicted RBP23.26■■□□□ 1.31
HOXC9-201ENST00000303450 I3L1I5 382 aaPredicted RBP23.26■■□□□ 1.31
HOXC9-201ENST00000303450 FOXE1O00358 373 aaPredicted RBP23.26■■□□□ 1.31
HOXC9-201ENST00000303450 MANBAO00462 879 aa23.26■■□□□ 1.31
HOXC9-201ENST00000303450 TLX3O43711 291 aaPredicted RBP23.26■■□□□ 1.31
HOXC9-201ENST00000303450 SH3BGRLO75368 114 aa23.26■■□□□ 1.31
HOXC9-201ENST00000303450 ULK1O75385 1050 aa23.26■■□□□ 1.31
HOXC9-201ENST00000303450 HSPA4LO95757 839 aa23.26■■□□□ 1.31
HOXC9-201ENST00000303450 TBX6O95947 436 aaPredicted RBP23.26■■□□□ 1.31
HOXC9-201ENST00000303450 ZNF888P0CJ79 500 aaPredicted RBP23.26■■□□□ 1.31
HOXC9-201ENST00000303450 ALOX12P18054 663 aa23.26■■□□□ 1.31
HOXC9-201ENST00000303450 HNRNPH1P31943 449 aaKnown RBP23.26■■□□□ 1.31
HOXC9-201ENST00000303450 RPS13P62277 151 aaKnown RBP23.26■■□□□ 1.31
HOXC9-201ENST00000303450 DTWD1Q8N5C7 304 aa23.26■■□□□ 1.31
HOXC9-201ENST00000303450 IL22RA1Q8N6P7 574 aa23.26■■□□□ 1.31
HOXC9-201ENST00000303450 ZNF248Q8NDW4 579 aa23.26■■□□□ 1.31
HOXC9-201ENST00000303450 UTP15Q8TED0 518 aaKnown RBP23.26■■□□□ 1.31
HOXC9-201ENST00000303450 NKD1Q969G9 470 aa23.26■■□□□ 1.31
HOXC9-201ENST00000303450 MS4A6EQ96DS6 147 aa23.26■■□□□ 1.31
HOXC9-201ENST00000303450 F2RL3Q96RI0 385 aa23.26■■□□□ 1.31
HOXC9-201ENST00000303450 ERI3O43414 337 aaKnown RBP23.25■■□□□ 1.31
HOXC9-201ENST00000303450 FOXS1O43638 330 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 PDYNP01213 254 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 UROSP10746 265 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 IL1RNP18510 177 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 PTX3P26022 381 aaPredicted RBP23.25■■□□□ 1.31
HOXC9-201ENST00000303450 ARRB2P32121 409 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 AVPR1BP47901 424 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 SLC1A6P48664 564 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 FOXA1P55317 472 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 RAB8AP61006 207 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 ABCE1P61221 599 aaKnown RBP23.25■■□□□ 1.31
HOXC9-201ENST00000303450 ADPRMQ3LIE5 342 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 TCHHL1Q5QJ38 904 aaPredicted RBP23.25■■□□□ 1.31
HOXC9-201ENST00000303450 CES4AQ5XG92 561 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 FAM219BQ5XKK7 198 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 ZNF385CQ66K41 422 aaPredicted RBP23.25■■□□□ 1.31
HOXC9-201ENST00000303450 SNIP1Q8TAD8 396 aaKnown RBP23.25■■□□□ 1.31
HOXC9-201ENST00000303450 DYDC1Q8WWB3 177 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 GAL3ST3Q96A11 431 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 MMABQ96EY8 250 aaPredicted RBP23.25■■□□□ 1.31
HOXC9-201ENST00000303450 CENPKQ9BS16 269 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 AICDAQ9GZX7 198 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 OR51B5Q9H339 312 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 AKIRIN1Q9H9L7 192 aaPredicted RBP23.25■■□□□ 1.31
HOXC9-201ENST00000303450 TNFRSF12AQ9NP84 129 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 FARSBQ9NSD9 589 aaKnown RBP23.25■■□□□ 1.31
HOXC9-201ENST00000303450 INTS9Q9NV88 658 aaKnown RBP23.25■■□□□ 1.31
HOXC9-201ENST00000303450 MAU2Q9Y6X3 613 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 FER1L5A0AVI2 2057 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 ACACAQ13085 2346 aa23.25■■□□□ 1.31
HOXC9-201ENST00000303450 AZIN1O14977 448 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 PIM1P11309 404 aaPredicted RBP23.24■■□□□ 1.31
HOXC9-201ENST00000303450 OR1D4P47884 311 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 SNRPNP63162 240 aaKnown RBP23.24■■□□□ 1.31
HOXC9-201ENST00000303450 SKP1P63208 163 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 TGM3Q08188 693 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 TGIF1Q15583 401 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 NKAIN1Q4KMZ8 207 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 DEFB134Q4QY38 66 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 TMEM35AQ53FP2 167 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 KHDRBS2Q5VWX1 349 aaKnown RBP23.24■■□□□ 1.31
HOXC9-201ENST00000303450 ATG16L1Q676U5 607 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 TRIM40Q6P9F5 258 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 FAM199XQ6PEV8 388 aaPredicted RBP23.24■■□□□ 1.31
HOXC9-201ENST00000303450 AFAP1L2Q8N4X5 818 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 OR2L5Q8NG80 312 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 OR9A4Q8NGU2 314 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 RAB3IL1Q8TBN0 382 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 KCNE4Q8WWG9 221 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 COL26A1Q96A83 441 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 NAF1Q96HR8 494 aaKnown RBP23.24■■□□□ 1.31
HOXC9-201ENST00000303450 FAR2Q96K12 515 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 CHST8Q9H2A9 424 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 MANSC1Q9H8J5 431 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 ZNF304Q9HCX3 659 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 PSD3Q9NYI0 1048 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 PPT2Q9UMR5 302 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 FIS1Q9Y3D6 152 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 NAALAD2Q9Y3Q0 740 aa23.24■■□□□ 1.31
HOXC9-201ENST00000303450 APC2O95996 2303 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms