RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 ZNF674Q2M3X9 581 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 SOHLH1Q5JUK2 328 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 SLC35D2Q76EJ3 337 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 TMEM86AQ8N2M4 240 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 C1orf52Q8N6N3 182 aaKnown RBP4.71□□□□□ -1.66
CSMD3-201ENST00000297405 NHLRC2Q8NBF2 726 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 RNF141Q8WVD5 230 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 UPRTQ96BW1 309 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 MED8Q96G25 268 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 CD180Q99467 661 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 ZNF286AQ9HBT8 521 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 SRA1Q9HD15 236 aaKnown RBP4.71□□□□□ -1.66
CSMD3-201ENST00000297405 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.71□□□□□ -1.66
CSMD3-201ENST00000297405 KLHL9Q9P2J3 617 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 CEPT1Q9Y6K0 416 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 DAPL1A0PJW8 107 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 ONECUT3O60422 494 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-201ENST00000297405 IL1AP01583 271 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 MT-ND4LP03901 98 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 HOXC9P31274 260 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 HBG1P69891 147 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 HBG2P69892 147 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 GALNT1Q10472 559 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-201ENST00000297405 DUSP4Q13115 394 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 TGFBIQ15582 683 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 SLC41A1Q8IVJ1 513 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 SLC30A7Q8NEW0 376 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 OR10H4Q8NGA5 316 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 ANAPC16Q96DE5 110 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 SYT15Q9BQS2 421 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 SCPEP1Q9HB40 452 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 ZNF586Q9NXT0 402 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 UBR1Q8IWV7 1749 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 E9PAM4 449 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 CLIC1O00299 241 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 TRBC1P01850 177 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 IMPA1P29218 277 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 CLCN4P51793 760 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 CES3Q6UWW8 571 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 APTXQ7Z2E3 356 aaKnown RBP4.71□□□□□ -1.66
CSMD3-201ENST00000297405 TMCO2Q7Z6W1 182 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-201ENST00000297405 OR56B2PQ8NGI1 322 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 MITD1Q8WV92 249 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 C10orf82Q8WW14 230 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 HLA-CQ95604 372 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 PGLYRP2Q96PD5 576 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 CHRDL1Q9BU40 450 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 ELOVL4Q9GZR5 314 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 CRLF2Q9HC73 371 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 GPR75-ASB3A0A0A6YYF3 556 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 A0A1W2PPW3 197 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 M0R143 59 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 TNFRSF10BO14763 440 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 BMP2P12643 396 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 AZGP1P25311 298 aaKnown RBP4.7□□□□□ -1.66
CSMD3-201ENST00000297405 FAAP100Q0VG06 881 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 BNIP3Q12983 259 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 ZSWIM9Q86XI8 627 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 SLC6A17Q9H1V8 727 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 REV1Q9UBZ9 1251 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 PCDHB10Q9UN67 800 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 ASB3Q9Y575 518 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 COL11A1P12107 1806 aaPredicted RBP4.7□□□□□ -1.66
CSMD3-201ENST00000297405 NUP153P49790 1475 aaKnown RBP4.7□□□□□ -1.66
CSMD3-201ENST00000297405 A0A1W2PPL8 197 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 MAGEB17A8MXT2 336 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 EGFP01133 1207 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 OXTRP30559 389 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 RPL35P42766 123 aaKnown RBP4.7□□□□□ -1.66
CSMD3-201ENST00000297405 ENTPD1P49961 510 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 HERVK_113P63132 956 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 TMEM214Q6NUQ4 689 aaKnown RBP4.7□□□□□ -1.66
CSMD3-201ENST00000297405 LINGO4Q6UY18 593 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 ZNF571Q7Z3V5 609 aaPredicted RBP4.7□□□□□ -1.66
CSMD3-201ENST00000297405 KCT2Q8NC54 265 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 HSFY1Q96LI6 401 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 ERVK-6Q9BXR3 956 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 PRDM9Q9NQV7 894 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 AAASQ9NRG9 546 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 RNF24Q9Y225 148 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 PTCH2Q9Y6C5 1203 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 STK16O75716 305 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 KHKP50053 298 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 HERV-K104P61576 105 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 SLC7A9P82251 487 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 ZNF616Q08AN1 781 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 UNC5DQ6UXZ4 953 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 TMED4Q7Z7H5 227 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 GPR149Q86SP6 731 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 TMEM18Q96B42 140 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 C12orf57Q99622 126 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 SEMA4CQ9C0C4 833 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 BLOC1S4Q9NUP1 217 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 PPIEQ9UNP9 301 aaKnown RBP4.7□□□□□ -1.66
CSMD3-201ENST00000297405 PCDHB11Q9Y5F2 797 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 PCDHAC2Q9Y5I4 1007 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 HRH3Q9Y5N1 445 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 CPED1A4D0V7 1026 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 RPS13P62277 151 aaKnown RBP4.7□□□□□ -1.66
CSMD3-201ENST00000297405 NFKB2Q00653 900 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms