RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 SOD2P04179 222 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 S100A6P06703 90 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 FDXRP22570 491 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 BMP8BP34820 402 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 ARSDP51689 593 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 RAB2AP61019 212 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 RPS3AP61247 264 aaKnown RBP10.4□□□□□ -0.74
CD44-201ENST00000263398 GRSF1Q12849 480 aaKnown RBP eCLIP10.4□□□□□ -0.74
CD44-201ENST00000263398 FADDQ13158 208 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 RAB6CQ53S08 254 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 PIGGQ5H8A4 983 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 MEDAGQ5VYS4 303 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 BMP8AQ7Z5Y6 402 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 PRSS58Q8IYP2 241 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 NPWQ8N729 165 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 RAB6CQ9H0N0 254 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 TAS2R9Q9NYW1 312 aa10.4□□□□□ -0.74
CD44-201ENST00000263398 OR6C70A6NIJ9 312 aa10.4□□□□□ -0.75
CD44-201ENST00000263398 WRBO00258 174 aa10.4□□□□□ -0.75
CD44-201ENST00000263398 CH25HO95992 272 aa10.4□□□□□ -0.75
CD44-201ENST00000263398 PON3Q15166 354 aa10.4□□□□□ -0.75
CD44-201ENST00000263398 ZNF423Q2M1K9 1284 aa10.4□□□□□ -0.75
CD44-201ENST00000263398 TOR1AIP1Q5JTV8 583 aa10.4□□□□□ -0.75
CD44-201ENST00000263398 LY6G5CQ5SRR4 150 aa10.4□□□□□ -0.75
CD44-201ENST00000263398 ZNF613Q6PF04 617 aa10.4□□□□□ -0.75
CD44-201ENST00000263398 RANBP10Q6VN20 620 aa10.4□□□□□ -0.75
CD44-201ENST00000263398 KDM1BQ8NB78 822 aa10.4□□□□□ -0.75
CD44-201ENST00000263398 DNAJC27Q9NZQ0 273 aa10.4□□□□□ -0.75
CD44-201ENST00000263398 MED11Q9P086 117 aa10.4□□□□□ -0.75
CD44-201ENST00000263398 PCDHB11Q9Y5F2 797 aa10.4□□□□□ -0.75
CD44-201ENST00000263398 PKD1L3Q7Z443 1732 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 LAMB4A4D0S4 1761 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 CCRL2O00421 344 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 SLC16A5O15375 505 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 AOC2O75106 756 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 GALTP07902 379 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 ITIH1P19827 911 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 ITGA3P26006 1051 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 RPL10P27635 214 aaKnown RBP10.39□□□□□ -0.75
CD44-201ENST00000263398 RAB8AP61006 207 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 BTN3A2P78410 334 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 VLDLRP98155 873 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 ZNF45Q02386 682 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 ST3GAL4Q11206 333 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 SUSD1Q6UWL2 747 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 KBTBD6Q86V97 674 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 OR10T2Q8NGX3 314 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 SUN5Q8TC36 379 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 RIT1Q92963 219 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 PMEPA1Q969W9 287 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 SIPA1Q96FS4 1042 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 CST11Q9H112 138 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 SOX17Q9H6I2 414 aaPredicted RBP10.39□□□□□ -0.75
CD44-201ENST00000263398 IFT46Q9NQC8 304 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 EIF3KQ9UBQ5 218 aaKnown RBP10.39□□□□□ -0.75
CD44-201ENST00000263398 WDR45Q9Y484 360 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 CAPN5O15484 640 aaPredicted RBP10.39□□□□□ -0.75
CD44-201ENST00000263398 GJB5O95377 273 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 F8A1P23610 371 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 PGGT1BP53609 377 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 CDKN2DP55273 166 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 ADAM15Q13444 863 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 ENPP2Q13822 863 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 DSG2Q14126 1118 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 TRAM2Q15035 370 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 ANKDD1AQ495B1 522 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 LCN8Q6JVE9 175 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 ANKRD26P1Q6NSI1 321 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 BPIFB1Q8TDL5 484 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 GAL3ST1Q99999 423 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 MYOCOSA0A1B0GUC4 107 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 COQ9O75208 318 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 DBIP07108 87 aaKnown RBP10.39□□□□□ -0.75
CD44-201ENST00000263398 HOXA11P31270 313 aaPredicted RBP10.39□□□□□ -0.75
CD44-201ENST00000263398 GKP32189 559 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 HNF1BP35680 557 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 MAP3K8P41279 467 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 OR4D2P58180 307 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 PHC1P78364 1004 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 SPRED3Q2MJR0 410 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 PSAPL1Q6NUJ1 521 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 ZNF527Q8NB42 609 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 RAB8BQ92930 207 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 SCAMP4Q969E2 229 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 BARD1Q99728 777 aaKnown RBP10.39□□□□□ -0.75
CD44-201ENST00000263398 DOHHQ9BU89 302 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 TBL1XR1Q9BZK7 514 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 CERS4Q9HA82 394 aa10.39□□□□□ -0.75
CD44-201ENST00000263398 LYARQ9NX58 379 aaKnown RBP10.39□□□□□ -0.75
CD44-201ENST00000263398 LEFTY2O00292 366 aa10.38□□□□□ -0.75
CD44-201ENST00000263398 GRID2O43424 1007 aa10.38□□□□□ -0.75
CD44-201ENST00000263398 MPC1LP0DKB6 136 aa10.38□□□□□ -0.75
CD44-201ENST00000263398 HMGCLP35914 325 aa10.38□□□□□ -0.75
CD44-201ENST00000263398 GMPRP36959 345 aa10.38□□□□□ -0.75
CD44-201ENST00000263398 PUM1Q14671 1186 aaKnown RBP eCLIP10.38□□□□□ -0.75
CD44-201ENST00000263398 PCBP2Q15366 365 aaKnown RBP eCLIP10.38□□□□□ -0.75
CD44-201ENST00000263398 MAMDC4Q6UXC1 1216 aa10.38□□□□□ -0.75
CD44-201ENST00000263398 GALNTL5Q7Z4T8 443 aa10.38□□□□□ -0.75
CD44-201ENST00000263398 ISCA2Q86U28 154 aa10.38□□□□□ -0.75
CD44-201ENST00000263398 ZNF598Q86UK7 904 aaKnown RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms