RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 LINC00615Q96LM1 132 aaPredicted RBP11.13□□□□□ -0.63
VPS4A-201ENST00000254950 LGR4Q9BXB1 951 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 TEX101Q9BY14 249 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 NANOGQ9H9S0 305 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 PDE7BQ9NP56 450 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 MS4A12Q9NXJ0 267 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 ACTR3BQ9P1U1 418 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 FNDC1Q4ZHG4 1894 aaPredicted RBP11.13□□□□□ -0.63
VPS4A-201ENST00000254950 KRT87PA6NCN2 255 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 TMEM150CB9EJG8 249 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 H0Y8X5 98 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 ARPC2O15144 300 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 BCAT2O15382 392 aaPredicted RBP11.12□□□□□ -0.63
VPS4A-201ENST00000254950 KLK8O60259 260 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 CAPN3P20807 821 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 GPX3P22352 226 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 JAK1P23458 1154 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 GSTM2P28161 218 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 KIR2DL1P43626 348 aaPredicted RBP11.12□□□□□ -0.63
VPS4A-201ENST00000254950 SEPHS1P49903 392 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 POLE2P56282 527 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 DEPDC1Q5TB30 811 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 MAVSQ7Z434 540 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 MINDY1Q8N5J2 469 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 OTULINQ96BN8 352 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 SLC6A18Q96N87 628 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 ZDHHC5Q9C0B5 715 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 GEMIN8Q9NWZ8 242 aaKnown RBP11.12□□□□□ -0.63
VPS4A-201ENST00000254950 CALML5Q9NZT1 146 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 GPR45Q9Y5Y3 372 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 VWA8A3KMH1 1905 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 A8MU76 341 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 H0YIV9 168 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 C6orf47O95873 294 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 MAGP20916 626 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 TEAD1P28347 426 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 SLC7A1P30825 629 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 FAM214AQ32MH5 1076 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 TMEM154Q6P9G4 183 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 SLCO4C1Q6ZQN7 724 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 LMNTD1Q8N9Z9 388 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 TGM7Q96PF1 710 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 EHD1Q9H4M9 534 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 TRPV5Q9NQA5 729 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 BATF3Q9NR55 127 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 MCM8Q9UJA3 840 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 KLHL20Q9Y2M5 609 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 MYOFQ9NZM1 2061 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 DFNA5O60443 496 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 BCAS2O75934 225 aaPredicted RBP11.12□□□□□ -0.63
VPS4A-201ENST00000254950 DCNP07585 359 aaKnown RBP11.12□□□□□ -0.63
VPS4A-201ENST00000254950 KHKP50053 298 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 DEFB134Q4QY38 66 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 ASRGL1Q7L266 308 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 TRIM73Q86UV7 250 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 GJD3Q8N144 294 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 CSNK1A1LQ8N752 337 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 FBXO15Q8NCQ5 510 aaPredicted RBP11.12□□□□□ -0.63
VPS4A-201ENST00000254950 OR8J3Q8NGG0 315 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 STON2Q8WXE9 905 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 NDC1Q9BTX1 674 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 ADAP2Q9NPF8 381 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 THUMPD1Q9NXG2 353 aaKnown RBP11.12□□□□□ -0.63
VPS4A-201ENST00000254950 IKZF3Q9UKT9 509 aa11.12□□□□□ -0.63
VPS4A-201ENST00000254950 LSM1O15116 133 aaKnown RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 CLEC3AO75596 197 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 SEMA3DO95025 777 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 SDC1P18827 310 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 DUSP3P51452 185 aaPredicted RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 CSTF1Q05048 431 aaKnown RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 ZNF155Q12901 538 aaPredicted RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 SLAMF1Q13291 335 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 PATL1Q86TB9 770 aaKnown RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 KLHDC8AQ8IYD2 350 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 CDK20Q8IZL9 346 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 OR5AK3PQ8NH89 298 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 PHF10Q8WUB8 498 aaKnown RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 ASB12Q8WXK4 309 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 BIRC7Q96CA5 298 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 ZFYVE21Q9BQ24 234 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 C3orf18Q9UK00 162 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 TRBC2A0A5B9 178 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 GAPDHSO14556 408 aaPredicted RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 MT-ND1P03886 318 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 IL9P15248 144 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 COL9A1P20849 921 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 PSMB5P28074 263 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 IFNGR2P38484 337 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 CSNK1EP49674 416 aaKnown RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 FBXW4P57775 412 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 PFN3P60673 137 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 DEFB133Q30KQ1 61 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 NIPAL1Q6NVV3 410 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 RABEPKQ7Z6M1 372 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 SLC15A3Q8IY34 581 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 TAS2R9Q9NYW1 312 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 GPN3Q9UHW5 284 aaPredicted RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 SERTAD3Q9UJW9 196 aa11.11□□□□□ -0.63
VPS4A-201ENST00000254950 CNOT6Q9ULM6 557 aaKnown RBP11.11□□□□□ -0.63
VPS4A-201ENST00000254950 SH3GLB1Q9Y371 365 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms