RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 MS4A4AQ96JQ5 239 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 PRDM5Q9NQX1 630 aaPredicted RBP13.84□□□□□ -0.19
SDC1-201ENST00000254351 NPAP1Q9NZP6 1156 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 MARCH2Q9P0N8 246 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 NDRG2Q9UN36 371 aaKnown RBP13.84□□□□□ -0.19
SDC1-201ENST00000254351 ERVW-1Q9UQF0 538 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 VCANP13611 3396 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 UGT2B17O75795 530 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 TSPAN9O75954 239 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 ITGA1P56199 1179 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 KCNJ10P78508 379 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 HSPA14Q0VDF9 509 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 EIF4EBP2Q13542 120 aaPredicted RBP13.83□□□□□ -0.2
SDC1-201ENST00000254351 PCBP2Q15366 365 aaKnown RBP eCLIP13.83□□□□□ -0.2
SDC1-201ENST00000254351 SAXO2Q658L1 398 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 FLCNQ8NFG4 579 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 OR4K1Q8NGD4 311 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 LRRC20Q8TCA0 184 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 OPALINQ96PE5 141 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 DHRS9Q9BPW9 319 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 GABARAPL1Q9H0R8 117 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 CCSER2Q9H7U1 834 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 HHATLQ9HCP6 504 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 PRG3Q9Y2Y8 225 aaPredicted RBP13.83□□□□□ -0.2
SDC1-201ENST00000254351 CMAHPQ9Y471 501 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 PCDHGB3Q9Y5G1 929 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 TRPM7Q96QT4 1865 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 MYO10Q9HD67 2058 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 MN1Q10571 1320 aaPredicted RBP13.83□□□□□ -0.2
SDC1-201ENST00000254351 FAM240BA0A1B0GVZ2 78 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 GRXCR2A6NFK2 248 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 PSMA1P25786 263 aaKnown RBP13.83□□□□□ -0.2
SDC1-201ENST00000254351 PTGS2P35354 604 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 INPP1P49441 399 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 LRRC32Q14392 662 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 P2RY14Q15391 338 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 TAF1AQ15573 450 aaPredicted RBP13.83□□□□□ -0.2
SDC1-201ENST00000254351 UPP1Q16831 310 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 C5orf22Q49AR2 442 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 ZNF852Q6ZMS4 543 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 VN1R5Q7Z5H4 357 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 HMGN2P46Q86SG4 172 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 SERPINA9Q86WD7 417 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 GRAMD2AQ8IUY3 354 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 VWA5B2Q8N398 1253 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 C1GALT1C1Q96EU7 318 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 ZIC5Q96T25 663 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 FAM129BQ96TA1 746 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 PKP4Q99569 1192 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 PPIL3Q9H2H8 161 aaKnown RBP13.83□□□□□ -0.2
SDC1-201ENST00000254351 ASB8Q9H765 288 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 GPBP1L1Q9HC44 474 aaPredicted RBP13.83□□□□□ -0.2
SDC1-201ENST00000254351 NDUFAF4Q9P032 175 aa13.83□□□□□ -0.2
SDC1-201ENST00000254351 STK16O75716 305 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 CLDN9O95484 217 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 PRAMEF1O95521 474 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 KRT6AP02538 564 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 KRT6BP04259 564 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 ETFAP13804 333 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 ENPP1P22413 925 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 OLR1P78380 273 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 DBPQ10586 325 aaPredicted RBP13.82□□□□□ -0.2
SDC1-201ENST00000254351 UGT8Q16880 541 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 RNASE12Q5GAN4 147 aaKnown RBP13.82□□□□□ -0.2
SDC1-201ENST00000254351 SPRYD7Q5W111 196 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 CDH24Q86UP0 819 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 GHDCQ8N2G8 530 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 TEX26Q8N6G2 289 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 AQP11Q8NBQ7 271 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 C19orf18Q8NEA5 215 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 RIPOR3Q96MK2 946 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 TM9SF2Q99805 663 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 WACQ9BTA9 647 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 C1QTNF6Q9BXI9 259 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 ATP13A2Q9NQ11 1180 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 ANKRD66B4E2M5 251 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 PLA2G10O15496 165 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 INSIG1O15503 277 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 PRAMEF11O60813 436 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 CCNB2O95067 398 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 SSTR2P30874 369 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 SDC2P34741 201 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 MRPL19P49406 292 aaKnown RBP13.82□□□□□ -0.2
SDC1-201ENST00000254351 CLDN8P56748 225 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 PSPHP78330 225 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 ZNF284Q2VY69 593 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 XKR4Q5GH76 650 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 COX20Q5RI15 118 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 AGMOQ6ZNB7 445 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 ASB18Q6ZVZ8 466 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 CBLL1Q75N03 491 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 SHFQ7M4L6 423 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 TAGAPQ8N103 731 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 EID2BQ96D98 161 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 C7orf34Q96L11 122 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 PITX2Q99697 317 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 ACBD6Q9BR61 282 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 ZNF224Q9NZL3 707 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 POLHQ9Y253 713 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 SLC22A14Q9Y267 594 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms