RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	VIRMA	Q69YN4	1812 aa	Known RBP	13.72	□□□□□ -0.21
SCN1A-222	ENST00000642141	TGFB2	P61812	414 aa		13.72	□□□□□ -0.21
SCN1A-222	ENST00000642141	DDX10	Q13206	875 aa	Known RBP	13.72	□□□□□ -0.21
SCN1A-222	ENST00000642141	BICDL1	Q6ZP65	573 aa		13.72	□□□□□ -0.21
SCN1A-222	ENST00000642141	VSIG10	Q8N0Z9	540 aa		13.72	□□□□□ -0.21
SCN1A-222	ENST00000642141	MIS18A	Q9NYP9	233 aa		13.72	□□□□□ -0.21
SCN1A-222	ENST00000642141	PXDNL	A1KZ92	1463 aa		13.72	□□□□□ -0.21
SCN1A-222	ENST00000642141	POLRMT	O00411	1230 aa	Known RBP	13.71	□□□□□ -0.21
SCN1A-222	ENST00000642141	A1BG	P04217	495 aa		13.71	□□□□□ -0.21
SCN1A-222	ENST00000642141	TM4SF1	P30408	202 aa		13.71	□□□□□ -0.21
SCN1A-222	ENST00000642141	CHRNA5	P30532	468 aa		13.71	□□□□□ -0.21
SCN1A-222	ENST00000642141	PIP4K2A	P48426	406 aa	Predicted RBP	13.71	□□□□□ -0.21
SCN1A-222	ENST00000642141	NFIX	Q14938	502 aa		13.71	□□□□□ -0.21
SCN1A-222	ENST00000642141	ARHGAP27	Q6ZUM4	889 aa		13.71	□□□□□ -0.21
SCN1A-222	ENST00000642141	FMNL2	Q96PY5	1086 aa		13.71	□□□□□ -0.21
SCN1A-222	ENST00000642141	BCL2L12	Q9HB09	334 aa		13.71	□□□□□ -0.21
SCN1A-222	ENST00000642141	NARF	Q9UHQ1	456 aa		13.71	□□□□□ -0.21
SCN1A-222	ENST00000642141	COL15A1	P39059	1388 aa		13.71	□□□□□ -0.22
SCN1A-222	ENST00000642141	HEG1	Q9ULI3	1381 aa		13.71	□□□□□ -0.22
SCN1A-222	ENST00000642141	ADAMTS7	Q9UKP4	1686 aa		13.7	□□□□□ -0.22
SCN1A-222	ENST00000642141	PRAMEF22	A3QJZ6	481 aa		13.7	□□□□□ -0.22
SCN1A-222	ENST00000642141	TBC1D2B	Q9UPU7	963 aa		13.7	□□□□□ -0.22
SCN1A-222	ENST00000642141	C10orf71	Q711Q0	1435 aa		13.7	□□□□□ -0.22
SCN1A-222	ENST00000642141	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.7	□□□□□ -0.22
SCN1A-222	ENST00000642141	CEMIP	Q8WUJ3	1361 aa		13.7	□□□□□ -0.22
SCN1A-222	ENST00000642141	GIGYF1	O75420	1035 aa	Predicted RBP	13.69	□□□□□ -0.22
SCN1A-222	ENST00000642141	KCNA3	P22001	575 aa		13.69	□□□□□ -0.22
SCN1A-222	ENST00000642141	USP16	Q9Y5T5	823 aa		13.69	□□□□□ -0.22
SCN1A-222	ENST00000642141	ATP10D	Q9P241	1426 aa		13.68	□□□□□ -0.22
SCN1A-222	ENST00000642141	EIF5	P55010	431 aa	Known RBP	13.68	□□□□□ -0.22
SCN1A-222	ENST00000642141	C1QTNF8	P60827	252 aa		13.68	□□□□□ -0.22
SCN1A-222	ENST00000642141	CCDC24	Q8N4L8	307 aa		13.68	□□□□□ -0.22
SCN1A-222	ENST00000642141	SERPINB2	P05120	415 aa		13.67	□□□□□ -0.22
SCN1A-222	ENST00000642141	NEFM	P07197	916 aa		13.67	□□□□□ -0.22
SCN1A-222	ENST00000642141	TBC1D9B	Q66K14	1250 aa		13.67	□□□□□ -0.22
SCN1A-222	ENST00000642141	THUMPD2	Q9BTF0	503 aa	Known RBP	13.67	□□□□□ -0.22
SCN1A-222	ENST00000642141	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.67	□□□□□ -0.22
SCN1A-222	ENST00000642141	PIM2	Q9P1W9	311 aa		13.67	□□□□□ -0.22
SCN1A-222	ENST00000642141	UBR2	Q8IWV8	1755 aa		13.66	□□□□□ -0.22
SCN1A-222	ENST00000642141	DALRD3	Q5D0E6	543 aa	Known RBP	13.66	□□□□□ -0.22
SCN1A-222	ENST00000642141	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.66	□□□□□ -0.22
SCN1A-222	ENST00000642141	KIAA1551	Q9HCM1	1747 aa		13.65	□□□□□ -0.22
SCN1A-222	ENST00000642141		A0A087WZG4	1122 aa		13.65	□□□□□ -0.22
SCN1A-222	ENST00000642141	TAF7	Q15545	349 aa	Predicted RBP	13.65	□□□□□ -0.22
SCN1A-222	ENST00000642141	NPM2	Q86SE8	214 aa	Known RBP	13.65	□□□□□ -0.22
SCN1A-222	ENST00000642141	PLEKHF1	Q96S99	279 aa		13.65	□□□□□ -0.22
SCN1A-222	ENST00000642141	KIF13B	Q9NQT8	1826 aa		13.64	□□□□□ -0.23
SCN1A-222	ENST00000642141	SIPA1L3	O60292	1781 aa	Predicted RBP	13.64	□□□□□ -0.23
SCN1A-222	ENST00000642141	SENP3-EIF4A1	A0A087X0R7	540 aa		13.64	□□□□□ -0.23
SCN1A-222	ENST00000642141	SNRPA1	P09661	255 aa	Known RBP	13.64	□□□□□ -0.23
SCN1A-222	ENST00000642141	IL6ST	P40189	918 aa	Predicted RBP	13.64	□□□□□ -0.23
SCN1A-222	ENST00000642141	HTATSF1	O43719	755 aa	Known RBP	13.63	□□□□□ -0.23
SCN1A-222	ENST00000642141	NFE2L2	Q16236	605 aa		13.63	□□□□□ -0.23
SCN1A-222	ENST00000642141	DZIP3	Q86Y13	1208 aa	Known RBP	13.63	□□□□□ -0.23
SCN1A-222	ENST00000642141	C2CD5	Q86YS7	1000 aa		13.63	□□□□□ -0.23
SCN1A-222	ENST00000642141	NGEF	Q8N5V2	710 aa		13.63	□□□□□ -0.23
SCN1A-222	ENST00000642141	MAPK8IP3	Q9UPT6	1336 aa		13.63	□□□□□ -0.23
SCN1A-222	ENST00000642141	NPHP1	O15259	732 aa		13.62	□□□□□ -0.23
SCN1A-222	ENST00000642141	CAMTA2	O94983	1202 aa		13.62	□□□□□ -0.23
SCN1A-222	ENST00000642141	RALBP1	Q15311	655 aa		13.62	□□□□□ -0.23
SCN1A-222	ENST00000642141	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.62	□□□□□ -0.23
SCN1A-222	ENST00000642141	ADCY9	O60503	1353 aa		13.61	□□□□□ -0.23
SCN1A-222	ENST00000642141	CARMIL3	Q8ND23	1372 aa		13.61	□□□□□ -0.23
SCN1A-222	ENST00000642141	NBPF26	B4DH59	902 aa		13.61	□□□□□ -0.23
SCN1A-222	ENST00000642141	C9orf131	Q5VYM1	1079 aa		13.61	□□□□□ -0.23
SCN1A-222	ENST00000642141	NBPF10	Q6P3W6	841 aa	Known RBP	13.61	□□□□□ -0.23
SCN1A-222	ENST00000642141	CCDC146	Q8IYE0	955 aa		13.61	□□□□□ -0.23
SCN1A-222	ENST00000642141	NBPF15	Q8N660	670 aa		13.61	□□□□□ -0.23
SCN1A-222	ENST00000642141	SETDB2	Q96T68	719 aa		13.61	□□□□□ -0.23
SCN1A-222	ENST00000642141	RRP7A	Q9Y3A4	280 aa	Known RBP	13.61	□□□□□ -0.23
SCN1A-222	ENST00000642141	FAM177B	A6PVY3	158 aa		13.6	□□□□□ -0.23
SCN1A-222	ENST00000642141		H0YIN7	160 aa		13.6	□□□□□ -0.23
SCN1A-222	ENST00000642141	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
SCN1A-222	ENST00000642141	RIPK4	P57078	832 aa		13.59	□□□□□ -0.23
SCN1A-222	ENST00000642141	RASSF7	Q02833	373 aa		13.59	□□□□□ -0.23
SCN1A-222	ENST00000642141	NEUROD2	Q15784	382 aa		13.59	□□□□□ -0.23
SCN1A-222	ENST00000642141	PRR5L	Q6MZQ0	368 aa		13.59	□□□□□ -0.23
SCN1A-222	ENST00000642141	PNN	Q9H307	717 aa	Known RBP	13.59	□□□□□ -0.23
SCN1A-222	ENST00000642141	AFDN	P55196	1824 aa	Known RBP	13.59	□□□□□ -0.23
SCN1A-222	ENST00000642141	TTLL6	Q8N841	843 aa		13.58	□□□□□ -0.24
SCN1A-222	ENST00000642141	RNF181	Q9P0P0	153 aa		13.58	□□□□□ -0.24
SCN1A-222	ENST00000642141	MYL6B	P14649	208 aa		13.57	□□□□□ -0.24
SCN1A-222	ENST00000642141	EIF4A1	P60842	406 aa	Known RBP	13.57	□□□□□ -0.24
SCN1A-222	ENST00000642141	HLF	Q16534	295 aa		13.57	□□□□□ -0.24
SCN1A-222	ENST00000642141	CNBD1	Q8NA66	436 aa		13.57	□□□□□ -0.24
SCN1A-222	ENST00000642141	PNISR	Q8TF01	805 aa	Known RBP	13.57	□□□□□ -0.24
SCN1A-222	ENST00000642141	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.57	□□□□□ -0.24
SCN1A-222	ENST00000642141	TMPO	P42166	694 aa	Known RBP	13.56	□□□□□ -0.24
SCN1A-222	ENST00000642141	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.56	□□□□□ -0.24
SCN1A-222	ENST00000642141	BRIP1	Q9BX63	1249 aa		13.56	□□□□□ -0.24
SCN1A-222	ENST00000642141	NMRK2	Q9NPI5	230 aa		13.56	□□□□□ -0.24
SCN1A-222	ENST00000642141	TSPYL4	Q9UJ04	414 aa		13.56	□□□□□ -0.24
SCN1A-222	ENST00000642141	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
SCN1A-222	ENST00000642141	BRCA1	P38398	1863 aa	Known RBP	13.56	□□□□□ -0.24
SCN1A-222	ENST00000642141	DLG5	Q8TDM6	1919 aa		13.55	□□□□□ -0.24
SCN1A-222	ENST00000642141	KIF3C	O14782	793 aa		13.55	□□□□□ -0.24
SCN1A-222	ENST00000642141	C21orf2	O43822	256 aa		13.55	□□□□□ -0.24
SCN1A-222	ENST00000642141	PDE6B	P35913	854 aa		13.55	□□□□□ -0.24
SCN1A-222	ENST00000642141	WDR43	Q15061	677 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
SCN1A-222	ENST00000642141	ZNF652	Q9Y2D9	606 aa		13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms