RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 EXOC4Q96A65 974 aa5.4□□□□□ -1.55
SCN1A-220ENST00000641603 HECW1Q76N89 1606 aa5.4□□□□□ -1.55
SCN1A-220ENST00000641603 ARHGEF12Q9NZN5 1544 aa5.4□□□□□ -1.55
SCN1A-220ENST00000641603 ME1P48163 572 aa5.4□□□□□ -1.55
SCN1A-220ENST00000641603 RNF187Q5TA31 235 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-220ENST00000641603 A0A087WUV0 522 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-220ENST00000641603 SRGAP3O43295 1099 aa5.4□□□□□ -1.55
SCN1A-220ENST00000641603 BMP15O95972 392 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 CASTP20810 708 aaKnown RBP5.39□□□□□ -1.55
SCN1A-220ENST00000641603 G3BP1Q13283 466 aaKnown RBP eCLIP5.39□□□□□ -1.55
SCN1A-220ENST00000641603 ICE2Q659A1 982 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 CEP128Q6ZU80 1094 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 ADAMTS8Q9UP79 889 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 EIF4G1Q04637 1599 aaKnown RBP5.39□□□□□ -1.55
SCN1A-220ENST00000641603 HNRNPMP52272 730 aaKnown RBP eCLIP5.39□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC114Q96M63 670 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 NCAPGQ9BPX3 1015 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 TCHPQ9BT92 498 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 FGD5Q6ZNL6 1462 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 CETN2P41208 172 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 CFAP100Q494V2 611 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 AFAP1L1Q8TED9 768 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 GNAI2P04899 355 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 SEPT7Q16181 437 aaKnown RBP5.39□□□□□ -1.55
SCN1A-220ENST00000641603 TCP11L2Q8N4U5 519 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 DTNBP1Q96EV8 351 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.39□□□□□ -1.55
SCN1A-220ENST00000641603 KDM4AO75164 1064 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 MAP7Q14244 749 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 HSP90AB2PQ58FF8 381 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 PPFIA1Q13136 1202 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 CTAGE9A4FU28 777 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 ZNF853P0CG23 659 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 CLNS1AP54105 237 aaKnown RBP5.39□□□□□ -1.55
SCN1A-220ENST00000641603 FCHSD1Q86WN1 690 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 GEMIN8Q9NWZ8 242 aaKnown RBP5.39□□□□□ -1.55
SCN1A-220ENST00000641603 DNAI1Q9UI46 699 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 SPDYE4A6NLX3 237 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 STX6O43752 255 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 RLBP1P12271 317 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 SSFA2P28290 1259 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 ZSCAN26Q16670 478 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 CTNNA3Q9UI47 895 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 HOXA7P31268 230 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-220ENST00000641603 BLOC1S2Q6QNY1 142 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 CFAP57Q96MR6 1250 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 CFAP58Q5T655 872 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 MMS22LQ6ZRQ5 1243 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 PDRG1Q9NUG6 133 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 HMG20BQ9P0W2 317 aa5.39□□□□□ -1.55
SCN1A-220ENST00000641603 WHAMMP3Q1A5X7 153 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC27Q2M243 656 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC174Q6PII3 467 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 VEZTQ9HBM0 779 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 RIPK4P57078 832 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 TACC1O75410 805 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 STAMBPO95630 424 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 KRBA2Q6ZNG9 492 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 PAXIP1Q6ZW49 1069 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-220ENST00000641603 AMOTL1Q8IY63 956 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 TRIM22Q8IYM9 498 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 PPFIBP2Q8ND30 876 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 ZNF526Q8TF50 670 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-220ENST00000641603 NUP133Q8WUM0 1156 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 NLRP5P59047 1200 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 DAAM2Q86T65 1068 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 LARSQ9P2J5 1176 aaKnown RBP5.38□□□□□ -1.55
SCN1A-220ENST00000641603 NAA25Q14CX7 972 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 UBTFL1P0CB47 393 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-220ENST00000641603 PRPHP41219 470 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 MCTP2Q6DN12 878 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 SLC4A10Q6U841 1118 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 TICAM2Q86XR7 235 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 PPP1R1BQ9UD71 204 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-220ENST00000641603 ZSCAN22P10073 491 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-220ENST00000641603 ZNF365Q70YC5 407 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 CCHCR1Q8TD31 782 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 NAIPQ13075 1403 aa5.38□□□□□ -1.55
SCN1A-220ENST00000641603 MAP3K9P80192 1104 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 TRIM14Q14142 442 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 PDCD2Q16342 344 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-220ENST00000641603 FAM71BQ8TC56 605 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 IRX1P78414 480 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-220ENST00000641603 NBPF9Q3BBW0 867 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 CCAR1Q8IX12 1150 aaKnown RBP5.37□□□□□ -1.55
SCN1A-220ENST00000641603 KCNG4Q8TDN1 519 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 TOP2BQ02880 1626 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 KRT83P78385 493 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 CACNA2D3Q8IZS8 1091 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 STIM2Q9P246 746 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 EPS15P42566 896 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 RARSP54136 660 aaKnown RBP5.37□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC12Q8WUD4 166 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-220ENST00000641603 PANK2Q9BZ23 570 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 NUCKS1Q9H1E3 243 aaKnown RBP5.37□□□□□ -1.55
SCN1A-220ENST00000641603 PARD3Q8TEW0 1356 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 NPHP1O15259 732 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 IRX4P78413 519 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC158Q5M9N0 1113 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC129Q6ZRS4 1044 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms