RNA–Protein interactions for RNA: ENST00000638114.1

CACNA1A-259, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 3

Gene CACNA1A, Length 517 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-259ENST00000638114 MYBBP1AQ9BQG0 1328 aaKnown RBP22.23■■□□□ 1.15
CACNA1A-259ENST00000638114 COL15A1P39059 1388 aa22.23■■□□□ 1.15
CACNA1A-259ENST00000638114 GOLGB1Q14789 3259 aaKnown RBP22.22■■□□□ 1.15
CACNA1A-259ENST00000638114 KCNQ3O43525 872 aa22.22■■□□□ 1.15
CACNA1A-259ENST00000638114 FKBP8Q14318 412 aa22.22■■□□□ 1.15
CACNA1A-259ENST00000638114 PLEKHF1Q96S99 279 aa22.22■■□□□ 1.15
CACNA1A-259ENST00000638114 TEX13AQ9BXU3 409 aaPredicted RBP22.22■■□□□ 1.15
CACNA1A-259ENST00000638114 PNNQ9H307 717 aaKnown RBP22.22■■□□□ 1.15
CACNA1A-259ENST00000638114 GRIN3BO60391 1043 aa22.21■■□□□ 1.15
CACNA1A-259ENST00000638114 USPL1Q5W0Q7 1092 aa22.21■■□□□ 1.15
CACNA1A-259ENST00000638114 WWC3Q9ULE0 1092 aa22.21■■□□□ 1.15
CACNA1A-259ENST00000638114 MAPK8IP3Q9UPT6 1336 aa22.21■■□□□ 1.15
CACNA1A-259ENST00000638114 DLG5Q8TDM6 1919 aa22.21■■□□□ 1.15
CACNA1A-259ENST00000638114 C10orf71Q711Q0 1435 aa22.2■■□□□ 1.14
CACNA1A-259ENST00000638114 KIF13BQ9NQT8 1826 aa22.2■■□□□ 1.14
CACNA1A-259ENST00000638114 NFE2L2Q16236 605 aa22.19■■□□□ 1.14
CACNA1A-259ENST00000638114 NARFQ9UHQ1 456 aa22.18■■□□□ 1.14
CACNA1A-259ENST00000638114 DDR1Q08345 913 aa22.17■■□□□ 1.14
CACNA1A-259ENST00000638114 ZNF330Q9Y3S2 320 aaPredicted RBP22.17■■□□□ 1.14
CACNA1A-259ENST00000638114 PXDNLA1KZ92 1463 aa22.16■■□□□ 1.14
CACNA1A-259ENST00000638114 EIF5P55010 431 aaKnown RBP22.16■■□□□ 1.14
CACNA1A-259ENST00000638114 TAF7Q15545 349 aaPredicted RBP22.16■■□□□ 1.14
CACNA1A-259ENST00000638114 N4BP2Q86UW6 1770 aaPredicted RBP22.15■■□□□ 1.14
CACNA1A-259ENST00000638114 A0A087WZG4 1122 aa22.15■■□□□ 1.14
CACNA1A-259ENST00000638114 TGFB2P61812 414 aa22.15■■□□□ 1.14
CACNA1A-259ENST00000638114 KIAA1551Q9HCM1 1747 aa22.14■■□□□ 1.14
CACNA1A-259ENST00000638114 A1BGP04217 495 aa22.14■■□□□ 1.13
CACNA1A-259ENST00000638114 TM4SF1P30408 202 aa22.14■■□□□ 1.13
CACNA1A-259ENST00000638114 MIS18AQ9NYP9 233 aa22.14■■□□□ 1.13
CACNA1A-259ENST00000638114 A0A0G2JLW4 131 aa22.13■■□□□ 1.13
CACNA1A-259ENST00000638114 PRAMEF22A3QJZ6 481 aa22.13■■□□□ 1.13
CACNA1A-259ENST00000638114 POLRMTO00411 1230 aaKnown RBP22.13■■□□□ 1.13
CACNA1A-259ENST00000638114 SNRPA1P09661 255 aaKnown RBP22.13■■□□□ 1.13
CACNA1A-259ENST00000638114 IL6STP40189 918 aaPredicted RBP22.13■■□□□ 1.13
CACNA1A-259ENST00000638114 NPM2Q86SE8 214 aaKnown RBP22.13■■□□□ 1.13
CACNA1A-259ENST00000638114 ZNF784Q8NCA9 323 aaPredicted RBP22.13■■□□□ 1.13
CACNA1A-259ENST00000638114 THUMPD2Q9BTF0 503 aaKnown RBP22.13■■□□□ 1.13
CACNA1A-259ENST00000638114 BCL2L12Q9HB09 334 aa22.13■■□□□ 1.13
CACNA1A-259ENST00000638114 USP16Q9Y5T5 823 aa22.13■■□□□ 1.13
CACNA1A-259ENST00000638114 NFIXQ14938 502 aa22.12■■□□□ 1.13
CACNA1A-259ENST00000638114 PRKRIP1Q9H875 184 aaPredicted RBP22.12■■□□□ 1.13
CACNA1A-259ENST00000638114 DPEP1P16444 411 aa22.11■■□□□ 1.13
CACNA1A-259ENST00000638114 WDR43Q15061 677 aaKnown RBP eCLIP22.11■■□□□ 1.13
CACNA1A-259ENST00000638114 PNISRQ8TF01 805 aaKnown RBP22.11■■□□□ 1.13
CACNA1A-259ENST00000638114 TBC1D2BQ9UPU7 963 aa22.1■■□□□ 1.13
CACNA1A-259ENST00000638114 SCN7AQ01118 1682 aa22.1■■□□□ 1.13
CACNA1A-259ENST00000638114 PIP4K2AP48426 406 aaPredicted RBP22.09■■□□□ 1.13
CACNA1A-259ENST00000638114 RIPK4P57078 832 aa22.09■■□□□ 1.13
CACNA1A-259ENST00000638114 BICDL1Q6ZP65 573 aa22.09■■□□□ 1.13
CACNA1A-259ENST00000638114 KDM3BQ7LBC6 1761 aa22.09■■□□□ 1.13
CACNA1A-259ENST00000638114 AFDNP55196 1824 aaKnown RBP22.08■■□□□ 1.13
CACNA1A-259ENST00000638114 CCDC146Q8IYE0 955 aa22.08■■□□□ 1.13
CACNA1A-259ENST00000638114 BCS1LQ9Y276 419 aa22.08■■□□□ 1.13
CACNA1A-259ENST00000638114 SERPINB2P05120 415 aa22.07■■□□□ 1.12
CACNA1A-259ENST00000638114 TMPOP42166 694 aaKnown RBP22.07■■□□□ 1.12
CACNA1A-259ENST00000638114 DZIP3Q86Y13 1208 aaKnown RBP22.06■■□□□ 1.12
CACNA1A-259ENST00000638114 LAMB4A4D0S4 1761 aa22.06■■□□□ 1.12
CACNA1A-259ENST00000638114 NRXN2Q9P2S2 1712 aa22.06■■□□□ 1.12
CACNA1A-259ENST00000638114 BRCA1P38398 1863 aaKnown RBP22.05■■□□□ 1.12
CACNA1A-259ENST00000638114 LMOD3Q0VAK6 560 aa22.05■■□□□ 1.12
CACNA1A-259ENST00000638114 TBC1D9BQ66K14 1250 aa22.05■■□□□ 1.12
CACNA1A-259ENST00000638114 RRP7AQ9Y3A4 280 aaKnown RBP22.05■■□□□ 1.12
CACNA1A-259ENST00000638114 CAMTA2O94983 1202 aa22.04■■□□□ 1.12
CACNA1A-259ENST00000638114 KCNA3P22001 575 aa22.04■■□□□ 1.12
CACNA1A-259ENST00000638114 CHRNA5P30532 468 aa22.04■■□□□ 1.12
CACNA1A-259ENST00000638114 RUNDC1Q96C34 613 aa22.04■■□□□ 1.12
CACNA1A-259ENST00000638114 BCORQ6W2J9 1755 aa22.04■■□□□ 1.12
CACNA1A-259ENST00000638114 EIF4A1P60842 406 aaKnown RBP22.03■■□□□ 1.12
CACNA1A-259ENST00000638114 NEUROD2Q15784 382 aa22.03■■□□□ 1.12
CACNA1A-259ENST00000638114 PIM2Q9P1W9 311 aa22.03■■□□□ 1.12
CACNA1A-259ENST00000638114 TSPYL4Q9UJ04 414 aa22.03■■□□□ 1.12
CACNA1A-259ENST00000638114 ADAMTS8Q9UP79 889 aa22.03■■□□□ 1.12
CACNA1A-259ENST00000638114 NBPF26B4DH59 902 aa22.02■■□□□ 1.12
CACNA1A-259ENST00000638114 GIGYF1O75420 1035 aaPredicted RBP22.02■■□□□ 1.12
CACNA1A-259ENST00000638114 NBPF10Q6P3W6 841 aaKnown RBP22.02■■□□□ 1.12
CACNA1A-259ENST00000638114 NBPF15Q8N660 670 aa22.02■■□□□ 1.12
CACNA1A-259ENST00000638114 CARMIL3Q8ND23 1372 aa22.01■■□□□ 1.11
CACNA1A-259ENST00000638114 DALRD3Q5D0E6 543 aaKnown RBP22■■□□□ 1.11
CACNA1A-259ENST00000638114 SETDB2Q96T68 719 aa22■■□□□ 1.11
CACNA1A-259ENST00000638114 ZNF316A6NFI3 1004 aaPredicted RBP21.99■■□□□ 1.11
CACNA1A-259ENST00000638114 ARHGAP27Q6ZUM4 889 aa21.99■■□□□ 1.11
CACNA1A-259ENST00000638114 ARFGEF1Q9Y6D6 1849 aa21.99■■□□□ 1.11
CACNA1A-259ENST00000638114 ZNF652Q9Y2D9 606 aa21.98■■□□□ 1.11
CACNA1A-259ENST00000638114 ATP10DQ9P241 1426 aa21.97■■□□□ 1.11
CACNA1A-259ENST00000638114 NPHP1O15259 732 aa21.97■■□□□ 1.11
CACNA1A-259ENST00000638114 NGEFQ8N5V2 710 aa21.97■■□□□ 1.11
CACNA1A-259ENST00000638114 ADCY9O60503 1353 aa21.97■■□□□ 1.11
CACNA1A-259ENST00000638114 PRR5LQ6MZQ0 368 aa21.96■■□□□ 1.11
CACNA1A-259ENST00000638114 CLEC4GQ6UXB4 293 aa21.96■■□□□ 1.11
CACNA1A-259ENST00000638114 C2CD5Q86YS7 1000 aa21.96■■□□□ 1.11
CACNA1A-259ENST00000638114 CCDC24Q8N4L8 307 aa21.96■■□□□ 1.11
CACNA1A-259ENST00000638114 BABAM1Q9NWV8 329 aa21.96■■□□□ 1.11
CACNA1A-259ENST00000638114 DLEC1Q9Y238 1755 aa21.95■■□□□ 1.1
CACNA1A-259ENST00000638114 CNBD1Q8NA66 436 aa21.95■■□□□ 1.1
CACNA1A-259ENST00000638114 TRIM35Q9UPQ4 493 aa21.95■■□□□ 1.1
CACNA1A-259ENST00000638114 ANKRD31Q8N7Z5 1873 aa21.94■■□□□ 1.1
CACNA1A-259ENST00000638114 H0YIN7 160 aa21.94■■□□□ 1.1
CACNA1A-259ENST00000638114 MYL6BP14649 208 aa21.94■■□□□ 1.1
CACNA1A-259ENST00000638114 LAS1LQ9Y4W2 734 aaKnown RBP21.94■■□□□ 1.1
CACNA1A-259ENST00000638114 BRIP1Q9BX63 1249 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms