RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PRDM11Q9NQV5 511 aa4.9□□□□□ -1.63
SCN1A-214ENST00000637038 ADAMTS13Q76LX8 1427 aa4.9□□□□□ -1.63
SCN1A-214ENST00000637038 C1orf167Q5SNV9 1468 aa4.9□□□□□ -1.63
SCN1A-214ENST00000637038 SLIT2O94813 1529 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 ST18O60284 1047 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 MCCP23508 829 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 RBM25P49756 843 aaKnown RBP4.89□□□□□ -1.63
SCN1A-214ENST00000637038 PRAM1Q96QH2 718 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 ZBTB40Q9NUA8 1239 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 KIF24Q5T7B8 1368 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 K7ELQ4 463 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-214ENST00000637038 PRKAR2BP31323 418 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 INTS3Q68E01 1043 aaKnown RBP4.89□□□□□ -1.63
SCN1A-214ENST00000637038 SIRT2Q8IXJ6 389 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 BCL9LQ86UU0 1499 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 FYB1O15117 783 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 REC8O95072 547 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 LTKP29376 864 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 TMEM132AQ24JP5 1023 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 COG3Q96JB2 828 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 SYT17Q9BSW7 474 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 MYCNP04198 464 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-214ENST00000637038 NCLP19338 710 aaKnown RBP4.89□□□□□ -1.63
SCN1A-214ENST00000637038 ESCO1Q5FWF5 840 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 CDK19Q9BWU1 502 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 TCHHQ07283 1943 aa4.89□□□□□ -1.63
SCN1A-214ENST00000637038 RGPD5Q99666 1765 aa4.88□□□□□ -1.63
SCN1A-214ENST00000637038 C5P01031 1676 aa4.88□□□□□ -1.63
SCN1A-214ENST00000637038 GRPEL1Q9HAV7 217 aa4.88□□□□□ -1.63
SCN1A-214ENST00000637038 CWC22Q9HCG8 908 aaKnown RBP4.88□□□□□ -1.63
SCN1A-214ENST00000637038 TNS3Q68CZ2 1445 aa4.88□□□□□ -1.63
SCN1A-214ENST00000637038 PTPRUQ92729 1446 aa4.88□□□□□ -1.63
SCN1A-214ENST00000637038 IDI1Q13907 227 aa4.88□□□□□ -1.63
SCN1A-214ENST00000637038 ALS2Q96Q42 1657 aa4.88□□□□□ -1.63
SCN1A-214ENST00000637038 TWISTNBQ3B726 338 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-214ENST00000637038 KRT28Q7Z3Y7 464 aa4.88□□□□□ -1.63
SCN1A-214ENST00000637038 LAMA4Q16363 1823 aa4.88□□□□□ -1.63
SCN1A-214ENST00000637038 RGPD3A6NKT7 1758 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-214ENST00000637038 RGPD4Q7Z3J3 1758 aa4.87□□□□□ -1.63
SCN1A-214ENST00000637038 IGSF3O75054 1194 aa4.87□□□□□ -1.63
SCN1A-214ENST00000637038 MSNP26038 577 aaKnown RBP4.87□□□□□ -1.63
SCN1A-214ENST00000637038 CCDC173Q0VFZ6 552 aa4.87□□□□□ -1.63
SCN1A-214ENST00000637038 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.87□□□□□ -1.63
SCN1A-214ENST00000637038 SPATA31A3Q5VYP0 1347 aa4.87□□□□□ -1.63
SCN1A-214ENST00000637038 CRB1P82279 1406 aa4.87□□□□□ -1.63
SCN1A-214ENST00000637038 SHANK3Q9BYB0 1731 aa4.87□□□□□ -1.63
SCN1A-214ENST00000637038 DPY19L2Q6NUT2 758 aa4.87□□□□□ -1.63
SCN1A-214ENST00000637038 RPAP2Q8IXW5 612 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-214ENST00000637038 SYAP1Q96A49 352 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-214ENST00000637038 ATF5Q9Y2D1 282 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-214ENST00000637038 ANKARQ7Z5J8 1434 aa4.87□□□□□ -1.63
SCN1A-214ENST00000637038 CLCN1P35523 988 aa4.87□□□□□ -1.63
SCN1A-214ENST00000637038 COL18A1P39060 1754 aa4.87□□□□□ -1.63
SCN1A-214ENST00000637038 MCM2P49736 904 aa4.87□□□□□ -1.63
SCN1A-214ENST00000637038 NCAPD2Q15021 1401 aa4.87□□□□□ -1.63
SCN1A-214ENST00000637038 CABP1Q9NZU7 370 aa4.87□□□□□ -1.63
SCN1A-214ENST00000637038 DDX49Q9Y6V7 483 aaKnown RBP4.87□□□□□ -1.63
SCN1A-214ENST00000637038 NFAT5O94916 1531 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 METP08581 1390 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 ABCC4O15439 1325 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 MRPL50Q8N5N7 158 aaKnown RBP4.86□□□□□ -1.63
SCN1A-214ENST00000637038 SPATA31A5Q5VU36 1347 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 SPATA31A7Q8IWB4 1347 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 TPM2P07951 284 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 XRCC6P12956 609 aaKnown RBP eCLIP4.86□□□□□ -1.63
SCN1A-214ENST00000637038 RAB3GAP1Q15042 981 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 SLC15A2Q16348 729 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 RTF1Q92541 710 aaKnown RBP4.86□□□□□ -1.63
SCN1A-214ENST00000637038 USP31Q70CQ4 1352 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 ABCB7O75027 752 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 PHF14O94880 888 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 CD2BP2O95400 341 aaKnown RBP4.86□□□□□ -1.63
SCN1A-214ENST00000637038 TNPO1Q92973 898 aaKnown RBP4.86□□□□□ -1.63
SCN1A-214ENST00000637038 EDC4Q6P2E9 1401 aaKnown RBP4.86□□□□□ -1.63
SCN1A-214ENST00000637038 SALL3Q9BXA9 1300 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 ATXN8OSP0DMR3 200 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 EZH2Q15910 746 aaKnown RBP4.86□□□□□ -1.63
SCN1A-214ENST00000637038 SOGA3Q5TF21 947 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 CLEC17AQ6ZS10 378 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 IL17RAQ96F46 866 aa4.86□□□□□ -1.63
SCN1A-214ENST00000637038 U3KPZ7 1027 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-214ENST00000637038 BCL9O00512 1426 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 PTPRCP08575 1304 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 ESPNB1AK53 854 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 HSPA1AP0DMV8 641 aaKnown RBP4.85□□□□□ -1.63
SCN1A-214ENST00000637038 HSPA1BP0DMV9 641 aaKnown RBP4.85□□□□□ -1.63
SCN1A-214ENST00000637038 PKN2Q16513 984 aaKnown RBP4.85□□□□□ -1.63
SCN1A-214ENST00000637038 TBC1D9Q6ZT07 1266 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 STK31Q9BXU1 1019 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 COL14A1Q05707 1796 aaKnown RBP4.85□□□□□ -1.63
SCN1A-214ENST00000637038 SCN11AQ9UI33 1791 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 IQCA1LA6NCM1 817 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 VAMP4O75379 141 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 MBD3O95983 291 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 NASPP49321 788 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-214ENST00000637038 RGS19P49795 217 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-214ENST00000637038 SMARCC1Q92922 1105 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-214ENST00000637038 FHDC1Q9C0D6 1143 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-214ENST00000637038 PHF8Q9UPP1 1060 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms