RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 TRIM35Q9UPQ4 493 aa8.16□□□□□ -1.1
SCN1A-213ENST00000636759 EVC2Q86UK5 1308 aa8.15□□□□□ -1.1
SCN1A-213ENST00000636759 TRHP20396 242 aaPredicted RBP8.15□□□□□ -1.1
SCN1A-213ENST00000636759 KMT5BQ4FZB7 885 aa8.15□□□□□ -1.1
SCN1A-213ENST00000636759 FAM43BQ6ZT52 329 aaPredicted RBP8.15□□□□□ -1.1
SCN1A-213ENST00000636759 TCP11L2Q8N4U5 519 aa8.15□□□□□ -1.1
SCN1A-213ENST00000636759 POLR3GO15318 223 aaPredicted RBP8.15□□□□□ -1.1
SCN1A-213ENST00000636759 MAP2K1Q02750 393 aaPredicted RBP8.15□□□□□ -1.1
SCN1A-213ENST00000636759 SART3Q15020 963 aaKnown RBP8.15□□□□□ -1.1
SCN1A-213ENST00000636759 TPD52L1Q16890 204 aaPredicted RBP8.15□□□□□ -1.1
SCN1A-213ENST00000636759 RNF20Q5VTR2 975 aa8.15□□□□□ -1.1
SCN1A-213ENST00000636759 RBM28Q9NW13 759 aaKnown RBP8.15□□□□□ -1.1
SCN1A-213ENST00000636759 PIK3R4Q99570 1358 aa8.15□□□□□ -1.11
SCN1A-213ENST00000636759 ZNF853P0CG23 659 aa8.15□□□□□ -1.11
SCN1A-213ENST00000636759 ATP6V1AP38606 617 aa8.15□□□□□ -1.11
SCN1A-213ENST00000636759 NUTM2DQ5VT03 806 aaPredicted RBP8.15□□□□□ -1.11
SCN1A-213ENST00000636759 DRC7Q8IY82 874 aa8.15□□□□□ -1.11
SCN1A-213ENST00000636759 AK7Q96M32 723 aa8.15□□□□□ -1.11
SCN1A-213ENST00000636759 TECPR2O15040 1411 aa8.14□□□□□ -1.11
SCN1A-213ENST00000636759 FAM135BQ49AJ0 1406 aa8.14□□□□□ -1.11
SCN1A-213ENST00000636759 SUFUQ9UMX1 484 aa8.14□□□□□ -1.11
SCN1A-213ENST00000636759 MARF1Q9Y4F3 1742 aaKnown RBP8.14□□□□□ -1.11
SCN1A-213ENST00000636759 ATP2B1P20020 1258 aa8.14□□□□□ -1.11
SCN1A-213ENST00000636759 ANKRD20A12PQ8NF67 263 aa8.14□□□□□ -1.11
SCN1A-213ENST00000636759 ST18O60284 1047 aa8.14□□□□□ -1.11
SCN1A-213ENST00000636759 KDM4AO75164 1064 aa8.14□□□□□ -1.11
SCN1A-213ENST00000636759 SSR1P43307 286 aaKnown RBP8.14□□□□□ -1.11
SCN1A-213ENST00000636759 LRCH2Q5VUJ6 765 aa8.14□□□□□ -1.11
SCN1A-213ENST00000636759 KIF1BPQ96EK5 621 aa8.14□□□□□ -1.11
SCN1A-213ENST00000636759 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.14□□□□□ -1.11
SCN1A-213ENST00000636759 NSFL1CQ9UNZ2 370 aaKnown RBP8.14□□□□□ -1.11
SCN1A-213ENST00000636759 RRP15Q9Y3B9 282 aaKnown RBP8.14□□□□□ -1.11
SCN1A-213ENST00000636759 V9GYY5 206 aaPredicted RBP8.14□□□□□ -1.11
SCN1A-213ENST00000636759 HCLS1P14317 486 aaPredicted RBP8.13□□□□□ -1.11
SCN1A-213ENST00000636759 PKP1Q13835 747 aa8.13□□□□□ -1.11
SCN1A-213ENST00000636759 FBXO38Q6PIJ6 1188 aa8.13□□□□□ -1.11
SCN1A-213ENST00000636759 NPHP1O15259 732 aa8.13□□□□□ -1.11
SCN1A-213ENST00000636759 CYP2E1P05181 493 aaPredicted RBP8.13□□□□□ -1.11
SCN1A-213ENST00000636759 MAP2K2P36507 400 aa8.13□□□□□ -1.11
SCN1A-213ENST00000636759 E2F4Q16254 413 aa8.13□□□□□ -1.11
SCN1A-213ENST00000636759 ARGLU1Q9NWB6 273 aaPredicted RBP8.13□□□□□ -1.11
SCN1A-213ENST00000636759 PEAK1Q9H792 1746 aa8.13□□□□□ -1.11
SCN1A-213ENST00000636759 RBM6P78332 1123 aaKnown RBP8.12□□□□□ -1.11
SCN1A-213ENST00000636759 SRLQ86TD4 932 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 ERO1AQ96HE7 468 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 BCL2L13Q9BXK5 485 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 MED4Q9NPJ6 270 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 FER1L4A9Z1Z3 1794 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 ITSN1Q15811 1721 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 FMN2Q9NZ56 1722 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 HDAC1Q13547 482 aaPredicted RBP8.12□□□□□ -1.11
SCN1A-213ENST00000636759 ELF2Q15723 593 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 SLFNL1Q499Z3 407 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 RAI14Q9P0K7 980 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 ATAD2Q6PL18 1390 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 PTCH1Q13635 1447 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 MTHFSP49914 203 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 MVPQ14764 893 aaKnown RBP8.12□□□□□ -1.11
SCN1A-213ENST00000636759 CEP135Q66GS9 1140 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 PLPPR3Q6T4P5 718 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 LEKR1Q6ZMV7 388 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 KIF2CQ99661 725 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 LNPKQ9C0E8 428 aa8.12□□□□□ -1.11
SCN1A-213ENST00000636759 ZNF215Q9UL58 517 aaPredicted RBP8.12□□□□□ -1.11
SCN1A-213ENST00000636759 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.12□□□□□ -1.11
SCN1A-213ENST00000636759 ATP7BP35670 1465 aa8.11□□□□□ -1.11
SCN1A-213ENST00000636759 TPRNQ4KMQ1 711 aa8.11□□□□□ -1.11
SCN1A-213ENST00000636759 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.11□□□□□ -1.11
SCN1A-213ENST00000636759 ZNF446Q9NWS9 450 aa8.11□□□□□ -1.11
SCN1A-213ENST00000636759 FBXO3Q9UK99 471 aa8.11□□□□□ -1.11
SCN1A-213ENST00000636759 RNF217Q8TC41 542 aa8.11□□□□□ -1.11
SCN1A-213ENST00000636759 SLIT1O75093 1534 aa8.11□□□□□ -1.11
SCN1A-213ENST00000636759 CLSTN1O94985 981 aa8.11□□□□□ -1.11
SCN1A-213ENST00000636759 OS9Q13438 667 aaPredicted RBP8.11□□□□□ -1.11
SCN1A-213ENST00000636759 DNAJC21Q5F1R6 531 aaKnown RBP8.11□□□□□ -1.11
SCN1A-213ENST00000636759 GOLGA5Q8TBA6 731 aa8.11□□□□□ -1.11
SCN1A-213ENST00000636759 KCNF1Q9H3M0 494 aa8.11□□□□□ -1.11
SCN1A-213ENST00000636759 RRP7AQ9Y3A4 280 aaKnown RBP8.11□□□□□ -1.11
SCN1A-213ENST00000636759 LRRC37A3O60309 1634 aa8.11□□□□□ -1.11
SCN1A-213ENST00000636759 MAGEA9P43362 315 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 CCDC183Q5T5S1 534 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 MCTP2Q6DN12 878 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 TMCO3Q6UWJ1 677 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 CFAP44Q96MT7 982 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 LCMT1Q9UIC8 334 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 IL16Q14005 1332 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.1□□□□□ -1.11
SCN1A-213ENST00000636759 IVLP07476 585 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 PTGS1P23219 599 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 PPP2R5AQ15172 486 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 BMP2KLQ5H9B9 411 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 RPAINQ86UA6 219 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 PPM1EQ8WY54 764 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 PRAM1Q96QH2 718 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 CABP2Q9NPB3 220 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 FAM53CQ9NYF3 392 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 STK26Q9P289 416 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 AK9Q5TCS8 1911 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 ARHGAP23Q9P227 1491 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 TNRQ92752 1358 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms