RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 MTFR1Q15390 333 aa7.72□□□□□ -1.17
SCN1A-211ENST00000635893 NBPF1Q3BBV0 1214 aa7.72□□□□□ -1.17
SCN1A-211ENST00000635893 ATXN7O15265 892 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-211ENST00000635893 AMPD1P23109 780 aa7.71□□□□□ -1.18
SCN1A-211ENST00000635893 ARSJQ5FYB0 599 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-211ENST00000635893 ZNF295-AS1Q8N0V1 137 aa7.71□□□□□ -1.18
SCN1A-211ENST00000635893 ZDHHC3Q9NYG2 299 aa7.71□□□□□ -1.18
SCN1A-211ENST00000635893 IQSEC3Q9UPP2 1182 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-211ENST00000635893 PCDHGA11Q9Y5H2 935 aa7.71□□□□□ -1.18
SCN1A-211ENST00000635893 A0A1W2PNR3 127 aa7.7□□□□□ -1.18
SCN1A-211ENST00000635893 PIK3CDO00329 1044 aa7.7□□□□□ -1.18
SCN1A-211ENST00000635893 PIK3R2O00459 728 aa7.7□□□□□ -1.18
SCN1A-211ENST00000635893 LZTS3O60299 673 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-211ENST00000635893 PROCP04070 461 aa7.7□□□□□ -1.18
SCN1A-211ENST00000635893 EPXP11678 715 aa7.7□□□□□ -1.18
SCN1A-211ENST00000635893 TATP17735 454 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-211ENST00000635893 EML3Q32P44 896 aa7.7□□□□□ -1.18
SCN1A-211ENST00000635893 COG6Q9Y2V7 657 aa7.7□□□□□ -1.18
SCN1A-211ENST00000635893 KRBA1A5PL33 1030 aa7.69□□□□□ -1.18
SCN1A-211ENST00000635893 HOXB4P17483 251 aaPredicted RBP7.69□□□□□ -1.18
SCN1A-211ENST00000635893 TNP2Q05952 138 aa7.69□□□□□ -1.18
SCN1A-211ENST00000635893 FAM182BQ5T319 152 aa7.69□□□□□ -1.18
SCN1A-211ENST00000635893 LINC00114Q6XXX2 140 aa7.69□□□□□ -1.18
SCN1A-211ENST00000635893 BTBD6Q96KE9 485 aa7.69□□□□□ -1.18
SCN1A-211ENST00000635893 NOD1Q9Y239 953 aa7.69□□□□□ -1.18
SCN1A-211ENST00000635893 NEURL1BA8MQ27 555 aa7.68□□□□□ -1.18
SCN1A-211ENST00000635893 BACH1O14867 736 aa7.68□□□□□ -1.18
SCN1A-211ENST00000635893 MAPTP10636 758 aaKnown RBP7.68□□□□□ -1.18
SCN1A-211ENST00000635893 SKIP12755 728 aa7.68□□□□□ -1.18
SCN1A-211ENST00000635893 COL8A1P27658 744 aa7.68□□□□□ -1.18
SCN1A-211ENST00000635893 WWC1Q8IX03 1113 aa7.68□□□□□ -1.18
SCN1A-211ENST00000635893 NFATC2IPQ8NCF5 419 aa7.68□□□□□ -1.18
SCN1A-211ENST00000635893 ALG2Q9H553 416 aa7.68□□□□□ -1.18
SCN1A-211ENST00000635893 CABP1Q9NZU7 370 aa7.68□□□□□ -1.18
SCN1A-211ENST00000635893 USP3Q9Y6I4 520 aa7.68□□□□□ -1.18
SCN1A-211ENST00000635893 DCDC2BA2VCK2 349 aa7.67□□□□□ -1.18
SCN1A-211ENST00000635893 GNB5O14775 395 aa7.67□□□□□ -1.18
SCN1A-211ENST00000635893 ADAM23O75077 832 aa7.67□□□□□ -1.18
SCN1A-211ENST00000635893 ADH6P28332 368 aa7.67□□□□□ -1.18
SCN1A-211ENST00000635893 GTF2IP78347 998 aa7.67□□□□□ -1.18
SCN1A-211ENST00000635893 ZIC5Q96T25 663 aa7.67□□□□□ -1.18
SCN1A-211ENST00000635893 AVENQ9NQS1 362 aaPredicted RBP7.67□□□□□ -1.18
SCN1A-211ENST00000635893 KHNYNO15037 678 aaKnown RBP7.66□□□□□ -1.18
SCN1A-211ENST00000635893 FAM157BP0CG42 384 aa7.66□□□□□ -1.18
SCN1A-211ENST00000635893 CD33P20138 364 aa7.66□□□□□ -1.18
SCN1A-211ENST00000635893 GRIN2CQ14957 1233 aa7.66□□□□□ -1.18
SCN1A-211ENST00000635893 SCHIP1Q9P0W5 487 aaPredicted RBP7.66□□□□□ -1.18
SCN1A-211ENST00000635893 GJA3Q9Y6H8 435 aa7.66□□□□□ -1.18
SCN1A-211ENST00000635893 DGKGP49619 791 aa7.65□□□□□ -1.18
SCN1A-211ENST00000635893 PSME1Q06323 249 aa7.65□□□□□ -1.18
SCN1A-211ENST00000635893 NCOA4Q13772 614 aa7.65□□□□□ -1.18
SCN1A-211ENST00000635893 SAMD5Q5TGI4 173 aa7.65□□□□□ -1.18
SCN1A-211ENST00000635893 SUV39H2Q9H5I1 410 aa7.65□□□□□ -1.18
SCN1A-211ENST00000635893 ZNF358Q9NW07 568 aa7.65□□□□□ -1.18
SCN1A-211ENST00000635893 HCN2Q9UL51 889 aa7.65□□□□□ -1.18
SCN1A-211ENST00000635893 BICDL1Q6ZP65 573 aa7.64□□□□□ -1.19
SCN1A-211ENST00000635893 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.64□□□□□ -1.19
SCN1A-211ENST00000635893 NOP53Q9NZM5 478 aaKnown RBP7.64□□□□□ -1.19
SCN1A-211ENST00000635893 KLF15Q9UIH9 416 aa7.64□□□□□ -1.19
SCN1A-211ENST00000635893 PARP3Q9Y6F1 533 aa7.64□□□□□ -1.19
SCN1A-211ENST00000635893 LAMC2Q13753 1193 aa7.63□□□□□ -1.19
SCN1A-211ENST00000635893 ZNF468Q5VIY5 522 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-211ENST00000635893 CHSY3Q70JA7 882 aa7.63□□□□□ -1.19
SCN1A-211ENST00000635893 FCHSD1Q86WN1 690 aa7.63□□□□□ -1.19
SCN1A-211ENST00000635893 MARK1Q9P0L2 795 aa7.63□□□□□ -1.19
SCN1A-211ENST00000635893 PRR12Q9ULL5 1215 aa7.63□□□□□ -1.19
SCN1A-211ENST00000635893 USP17L5A8MUK1 530 aa7.62□□□□□ -1.19
SCN1A-211ENST00000635893 EFSO43281 561 aa7.62□□□□□ -1.19
SCN1A-211ENST00000635893 RAD21O60216 631 aa7.62□□□□□ -1.19
SCN1A-211ENST00000635893 TXLNAP40222 546 aa7.62□□□□□ -1.19
SCN1A-211ENST00000635893 BAG6P46379 1132 aa7.62□□□□□ -1.19
SCN1A-211ENST00000635893 TEAD4Q15561 434 aa7.62□□□□□ -1.19
SCN1A-211ENST00000635893 ZDHHC1Q8WTX9 485 aa7.62□□□□□ -1.19
SCN1A-211ENST00000635893 L3MBTL2Q969R5 705 aa7.62□□□□□ -1.19
SCN1A-211ENST00000635893 K7ELQ4 463 aaPredicted RBP7.61□□□□□ -1.19
SCN1A-211ENST00000635893 NOS2P35228 1153 aa7.61□□□□□ -1.19
SCN1A-211ENST00000635893 EPHA4P54764 986 aa7.61□□□□□ -1.19
SCN1A-211ENST00000635893 PCBP4P57723 403 aaKnown RBP7.61□□□□□ -1.19
SCN1A-211ENST00000635893 TRIM50Q86XT4 487 aa7.61□□□□□ -1.19
SCN1A-211ENST00000635893 DEPDC4Q8N2C3 294 aa7.61□□□□□ -1.19
SCN1A-211ENST00000635893 POM121Q96HA1 1249 aa7.61□□□□□ -1.19
SCN1A-211ENST00000635893 SLC9A9Q8IVB4 645 aa7.6□□□□□ -1.19
SCN1A-211ENST00000635893 STRN4Q9NRL3 753 aa7.6□□□□□ -1.19
SCN1A-211ENST00000635893 GPC6Q9Y625 555 aaPredicted RBP7.6□□□□□ -1.19
SCN1A-211ENST00000635893 C1QTNF9BB2RNN3 333 aa7.59□□□□□ -1.19
SCN1A-211ENST00000635893 EML1O00423 815 aa7.59□□□□□ -1.19
SCN1A-211ENST00000635893 TNS4Q8IZW8 715 aa7.59□□□□□ -1.19
SCN1A-211ENST00000635893 NEUROD4Q9HD90 331 aa7.59□□□□□ -1.19
SCN1A-211ENST00000635893 ZNF232Q9UNY5 417 aa7.59□□□□□ -1.19
SCN1A-211ENST00000635893 ATP1A2P50993 1020 aa7.58□□□□□ -1.2
SCN1A-211ENST00000635893 FLIIQ13045 1269 aa7.58□□□□□ -1.2
SCN1A-211ENST00000635893 LRRC69Q6ZNQ3 347 aa7.58□□□□□ -1.2
SCN1A-211ENST00000635893 PLEKHM2Q8IWE5 1019 aa7.58□□□□□ -1.2
SCN1A-211ENST00000635893 SERTM1A2A2V5 107 aa7.57□□□□□ -1.2
SCN1A-211ENST00000635893 ZBTB7BO15156 539 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-211ENST00000635893 PRKCSHP14314 528 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-211ENST00000635893 UBTFP17480 764 aaKnown RBP7.57□□□□□ -1.2
SCN1A-211ENST00000635893 ALAS2P22557 587 aa7.57□□□□□ -1.2
SCN1A-211ENST00000635893 TBCELQ5QJ74 424 aa7.57□□□□□ -1.2
SCN1A-211ENST00000635893 CD163Q86VB7 1156 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms