RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 SMC1AQ14683 1233 aaKnown RBP10.33□□□□□ -0.76
VCL-206ENST00000623461 CFAP70Q5T0N1 1121 aa10.33□□□□□ -0.76
VCL-206ENST00000623461 MICALL1Q8N3F8 863 aa10.33□□□□□ -0.76
VCL-206ENST00000623461 HSF2BPO75031 334 aa10.33□□□□□ -0.76
VCL-206ENST00000623461 CCDC57Q2TAC2 916 aa10.33□□□□□ -0.76
VCL-206ENST00000623461 CCDC12Q8WUD4 166 aaPredicted RBP10.33□□□□□ -0.76
VCL-206ENST00000623461 PIBF1Q8WXW3 757 aa10.33□□□□□ -0.76
VCL-206ENST00000623461 RPRD2Q5VT52 1461 aaKnown RBP10.33□□□□□ -0.76
VCL-206ENST00000623461 OPA1O60313 960 aa10.33□□□□□ -0.76
VCL-206ENST00000623461 TRIM27P14373 513 aa10.33□□□□□ -0.76
VCL-206ENST00000623461 FSIP1Q8NA03 581 aa10.33□□□□□ -0.76
VCL-206ENST00000623461 AQRO60306 1485 aaKnown RBP eCLIP10.33□□□□□ -0.765e-7■■■□□ 18.9
VCL-206ENST00000623461 UTP14CQ5TAP6 766 aaKnown RBP10.33□□□□□ -0.76
VCL-206ENST00000623461 AACSQ86V21 672 aa10.33□□□□□ -0.76
VCL-206ENST00000623461 TDO2P48775 406 aa10.33□□□□□ -0.76
VCL-206ENST00000623461 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.32□□□□□ -0.76
VCL-206ENST00000623461 PTPRGP23470 1445 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 EBAG9O00559 213 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 ZFYVE27Q5T4F4 411 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 PRPF40BQ6NWY9 871 aaKnown RBP10.32□□□□□ -0.76
VCL-206ENST00000623461 TANGO6Q9C0B7 1094 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 ANO6Q4KMQ2 910 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 IL16Q14005 1332 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 SRGAP3O43295 1099 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 C10orf67Q8IYJ2 551 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 IFFO1Q0D2I5 559 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 VPS37DQ86XT2 251 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 SLC12A5Q9H2X9 1139 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 MAPKBP1O60336 1514 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 CTAGE15A4D2H0 777 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 CTAGE8P0CG41 777 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 CTAGE6Q86UF2 777 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 CTAGE4Q8IX94 777 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 STK11IPQ8N1F8 1099 aa10.32□□□□□ -0.76
VCL-206ENST00000623461 ZNF500O60304 480 aaPredicted RBP10.31□□□□□ -0.76
VCL-206ENST00000623461 TTC39AQ5SRH9 613 aa10.31□□□□□ -0.76
VCL-206ENST00000623461 HDGFL1Q5TGJ6 251 aa10.31□□□□□ -0.76
VCL-206ENST00000623461 DNAI1Q9UI46 699 aa10.31□□□□□ -0.76
VCL-206ENST00000623461 PIP4K2BP78356 416 aa10.31□□□□□ -0.76
VCL-206ENST00000623461 NSD3Q9BZ95 1437 aa10.31□□□□□ -0.76
VCL-206ENST00000623461 FKBP15Q5T1M5 1219 aa10.31□□□□□ -0.76
VCL-206ENST00000623461 MEX3CQ5U5Q3 659 aaKnown RBP10.31□□□□□ -0.76
VCL-206ENST00000623461 CCDC43Q96MW1 224 aaKnown RBP10.31□□□□□ -0.76
VCL-206ENST00000623461 ALS2CR12Q96Q35 445 aa10.31□□□□□ -0.76
VCL-206ENST00000623461 PTPN23Q9H3S7 1636 aa10.31□□□□□ -0.76
VCL-206ENST00000623461 PHAXQ9H814 394 aaKnown RBP10.31□□□□□ -0.76
VCL-206ENST00000623461 KRBA2Q6ZNG9 492 aa10.31□□□□□ -0.76
VCL-206ENST00000623461 AIMP1Q12904 312 aaKnown RBP10.31□□□□□ -0.76
VCL-206ENST00000623461 U3KPZ7 1027 aaPredicted RBP10.31□□□□□ -0.76
VCL-206ENST00000623461 CFAP43Q8NDM7 1665 aa10.31□□□□□ -0.76
VCL-206ENST00000623461 INTS4Q96HW7 963 aaKnown RBP10.3□□□□□ -0.76
VCL-206ENST00000623461 PTPRCP08575 1304 aa10.3□□□□□ -0.76
VCL-206ENST00000623461 SMARCA5O60264 1052 aaPredicted RBP10.3□□□□□ -0.76
VCL-206ENST00000623461 IBSPP21815 317 aaPredicted RBP10.3□□□□□ -0.76
VCL-206ENST00000623461 GBP6Q6ZN66 633 aa10.3□□□□□ -0.76
VCL-206ENST00000623461 NUP88Q99567 741 aaPredicted RBP10.3□□□□□ -0.76
VCL-206ENST00000623461 IL1RAPL2Q9NP60 686 aa10.3□□□□□ -0.76
VCL-206ENST00000623461 NUTM2FA1L443 756 aa10.3□□□□□ -0.76
VCL-206ENST00000623461 KANK3Q6NY19 840 aa10.3□□□□□ -0.76
VCL-206ENST00000623461 PPP1R9BQ96SB3 815 aa10.3□□□□□ -0.76
VCL-206ENST00000623461 NACAP1Q9BZK3 213 aa10.3□□□□□ -0.76
VCL-206ENST00000623461 C8orf76Q96K31 380 aa10.3□□□□□ -0.76
VCL-206ENST00000623461 CTCFLQ8NI51 663 aaPredicted RBP10.3□□□□□ -0.76
VCL-206ENST00000623461 RBSNQ9H1K0 784 aa10.3□□□□□ -0.76
VCL-206ENST00000623461 EXOC6BQ9Y2D4 811 aa10.3□□□□□ -0.76
VCL-206ENST00000623461 HDXQ7Z353 690 aa10.29□□□□□ -0.76
VCL-206ENST00000623461 OTUD6BQ8N6M0 293 aa10.29□□□□□ -0.76
VCL-206ENST00000623461 CNNM3Q8NE01 707 aa10.29□□□□□ -0.76
VCL-206ENST00000623461 PPM1EQ8WY54 764 aa10.29□□□□□ -0.76
VCL-206ENST00000623461 DMTNQ08495 405 aa10.29□□□□□ -0.76
VCL-206ENST00000623461 RNF123Q5XPI4 1314 aa10.29□□□□□ -0.76
VCL-206ENST00000623461 ARHGAP45Q92619 1136 aa10.29□□□□□ -0.76
VCL-206ENST00000623461 FGFR1OPO95684 399 aaKnown RBP10.29□□□□□ -0.76
VCL-206ENST00000623461 MCM6Q14566 821 aa10.29□□□□□ -0.76
VCL-206ENST00000623461 NUTM1Q86Y26 1132 aa10.29□□□□□ -0.76
VCL-206ENST00000623461 ATAD2Q6PL18 1390 aa10.29□□□□□ -0.76
VCL-206ENST00000623461 RIOK3O14730 519 aaKnown RBP10.29□□□□□ -0.76
VCL-206ENST00000623461 VPS18Q9P253 973 aa10.29□□□□□ -0.76
VCL-206ENST00000623461 CNPY2Q9Y2B0 182 aa10.29□□□□□ -0.76
VCL-206ENST00000623461 PLCD3Q8N3E9 789 aa10.29□□□□□ -0.76
VCL-206ENST00000623461 KRT18P05783 430 aaKnown RBP10.28□□□□□ -0.76
VCL-206ENST00000623461 UBASH3AP57075 661 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 A6NNZ2 444 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 F13A1P00488 732 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 PTGS1P23219 599 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 TYRO3Q06418 890 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 TUBB8Q3ZCM7 444 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 DHX37Q8IY37 1157 aaKnown RBP10.28□□□□□ -0.76
VCL-206ENST00000623461 PCDHB15Q9Y5E8 787 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 ANKRD62A6NC57 917 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 U2AF2P26368 475 aaKnown RBP eCLIP10.28□□□□□ -0.761e-6■■■□□ 15.9
VCL-206ENST00000623461 TUBB2AQ13885 445 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 TUBB2BQ9BVA1 445 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 BCCIPQ9P287 314 aaKnown RBP eCLIP10.28□□□□□ -0.76
VCL-206ENST00000623461 CCDC141Q6ZP82 1450 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 IGSF3O75054 1194 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 RBM28Q9NW13 759 aaKnown RBP10.28□□□□□ -0.76
VCL-206ENST00000623461 HMG20BQ9P0W2 317 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.28□□□□□ -0.761e-7■□□□□ 11.2
VCL-206ENST00000623461 PYM1Q9BRP8 204 aaKnown RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms