RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 INTS5Q6P9B9 1019 aaKnown RBP15.52■□□□□ 0.08
CPNE3-210ENST00000621245 DNAJC10Q8IXB1 793 aa15.52■□□□□ 0.08
CPNE3-210ENST00000621245 HMGB2P26583 209 aaKnown RBP15.51■□□□□ 0.07
CPNE3-210ENST00000621245 C1QTNF8P60827 252 aa15.51■□□□□ 0.07
CPNE3-210ENST00000621245 NRXN2Q9P2S2 1712 aa15.51■□□□□ 0.07
CPNE3-210ENST00000621245 USP42Q9H9J4 1324 aaKnown RBP15.5■□□□□ 0.07
CPNE3-210ENST00000621245 ABCB7O75027 752 aa15.5■□□□□ 0.07
CPNE3-210ENST00000621245 DDR1Q08345 913 aa15.5■□□□□ 0.07
CPNE3-210ENST00000621245 DLEC1Q9Y238 1755 aa15.49■□□□□ 0.07
CPNE3-210ENST00000621245 SCN7AQ01118 1682 aa15.49■□□□□ 0.07
CPNE3-210ENST00000621245 A0A0G2JLW4 131 aa15.49■□□□□ 0.07
CPNE3-210ENST00000621245 RFC4P35249 363 aa15.49■□□□□ 0.07
CPNE3-210ENST00000621245 ZBTB12Q9Y330 459 aaPredicted RBP15.49■□□□□ 0.07
CPNE3-210ENST00000621245 GIGYF1O75420 1035 aaPredicted RBP15.48■□□□□ 0.07
CPNE3-210ENST00000621245 ZNF526Q8TF50 670 aaPredicted RBP15.48■□□□□ 0.07
CPNE3-210ENST00000621245 DLG5Q8TDM6 1919 aa15.48■□□□□ 0.07
CPNE3-210ENST00000621245 ANKRD31Q8N7Z5 1873 aa15.48■□□□□ 0.07
CPNE3-210ENST00000621245 SOS1Q07889 1333 aaPredicted RBP15.47■□□□□ 0.07
CPNE3-210ENST00000621245 SENP3-EIF4A1A0A087X0R7 540 aa15.47■□□□□ 0.07
CPNE3-210ENST00000621245 U2SURPO15042 1029 aaKnown RBP15.47■□□□□ 0.07
CPNE3-210ENST00000621245 SBF1O95248 1867 aa15.47■□□□□ 0.07
CPNE3-210ENST00000621245 CYP19A1P11511 503 aaPredicted RBP15.47■□□□□ 0.07
CPNE3-210ENST00000621245 DPEP1P16444 411 aa15.47■□□□□ 0.07
CPNE3-210ENST00000621245 NLGN1Q8N2Q7 840 aa15.47■□□□□ 0.07
CPNE3-210ENST00000621245 ZBTB1Q9Y2K1 713 aa15.47■□□□□ 0.07
CPNE3-210ENST00000621245 PLCB2Q00722 1185 aa15.46■□□□□ 0.07
CPNE3-210ENST00000621245 CCDC87Q9NVE4 849 aa15.46■□□□□ 0.07
CPNE3-210ENST00000621245 BCORQ6W2J9 1755 aa15.46■□□□□ 0.07
CPNE3-210ENST00000621245 COL11A2P13942 1736 aaPredicted RBP15.46■□□□□ 0.06
CPNE3-210ENST00000621245 KCNA3P22001 575 aa15.45■□□□□ 0.06
CPNE3-210ENST00000621245 POTEDQ86YR6 584 aa15.45■□□□□ 0.06
CPNE3-210ENST00000621245 IL17REQ8NFR9 667 aa15.45■□□□□ 0.06
CPNE3-210ENST00000621245 COL15A1P39059 1388 aa15.45■□□□□ 0.06
CPNE3-210ENST00000621245 CACNA1SQ13698 1873 aa15.44■□□□□ 0.06
CPNE3-210ENST00000621245 USPL1Q5W0Q7 1092 aa15.44■□□□□ 0.06
CPNE3-210ENST00000621245 PHACTR3Q96KR7 559 aa15.44■□□□□ 0.06
CPNE3-210ENST00000621245 BCL2L12Q9HB09 334 aa15.44■□□□□ 0.06
CPNE3-210ENST00000621245 BCS1LQ9Y276 419 aa15.44■□□□□ 0.06
CPNE3-210ENST00000621245 PARP3Q9Y6F1 533 aa15.44■□□□□ 0.06
CPNE3-210ENST00000621245 CCDC88AQ3V6T2 1871 aa15.44■□□□□ 0.06
CPNE3-210ENST00000621245 POLRMTO00411 1230 aaKnown RBP15.43■□□□□ 0.06
CPNE3-210ENST00000621245 TGFB2P61812 414 aa15.43■□□□□ 0.06
CPNE3-210ENST00000621245 RSPH6AQ9H0K4 717 aa15.43■□□□□ 0.06
CPNE3-210ENST00000621245 CARMIL3Q8ND23 1372 aa15.42■□□□□ 0.06
CPNE3-210ENST00000621245 TM4SF1P30408 202 aa15.42■□□□□ 0.06
CPNE3-210ENST00000621245 CHRNA5P30532 468 aa15.42■□□□□ 0.06
CPNE3-210ENST00000621245 CEMIPQ8WUJ3 1361 aa15.41■□□□□ 0.06
CPNE3-210ENST00000621245 KCNQ3O43525 872 aa15.41■□□□□ 0.06
CPNE3-210ENST00000621245 PPP2R1AP30153 589 aa15.41■□□□□ 0.06
CPNE3-210ENST00000621245 PRKAR2BP31323 418 aa15.41■□□□□ 0.06
CPNE3-210ENST00000621245 ZNF496Q96IT1 587 aaPredicted RBP15.41■□□□□ 0.06
CPNE3-210ENST00000621245 GNAT3A8MTJ3 354 aa15.4■□□□□ 0.06
CPNE3-210ENST00000621245 FCHSD2O94868 740 aa15.4■□□□□ 0.06
CPNE3-210ENST00000621245 IFFO2Q5TF58 517 aa15.4■□□□□ 0.06
CPNE3-210ENST00000621245 HEG1Q9ULI3 1381 aa15.39■□□□□ 0.05
CPNE3-210ENST00000621245 CANXP27824 592 aaKnown RBP15.39■□□□□ 0.05
CPNE3-210ENST00000621245 NFIXQ14938 502 aa15.39■□□□□ 0.05
CPNE3-210ENST00000621245 GPBP1L1Q9HC44 474 aaPredicted RBP15.39■□□□□ 0.05
CPNE3-210ENST00000621245 NARFQ9UHQ1 456 aa15.39■□□□□ 0.05
CPNE3-210ENST00000621245 TIAM2Q8IVF5 1701 aa15.39■□□□□ 0.05
CPNE3-210ENST00000621245 LAMB4A4D0S4 1761 aa15.39■□□□□ 0.05
CPNE3-210ENST00000621245 PCNTO95613 3336 aa15.38■□□□□ 0.05
CPNE3-210ENST00000621245 ARHGAP27Q6ZUM4 889 aa15.38■□□□□ 0.05
CPNE3-210ENST00000621245 VSIG10Q8N0Z9 540 aa15.38■□□□□ 0.05
CPNE3-210ENST00000621245 GAS2L2Q8NHY3 880 aa15.38■□□□□ 0.05
CPNE3-210ENST00000621245 KDM3BQ7LBC6 1761 aa15.38■□□□□ 0.05
CPNE3-210ENST00000621245 ZPR1O75312 459 aa15.37■□□□□ 0.05
CPNE3-210ENST00000621245 TEFQ10587 303 aa15.37■□□□□ 0.05
CPNE3-210ENST00000621245 ZNF790Q6PG37 636 aa15.37■□□□□ 0.05
CPNE3-210ENST00000621245 PRAMEF22A3QJZ6 481 aa15.36■□□□□ 0.05
CPNE3-210ENST00000621245 KIF3CO14782 793 aa15.36■□□□□ 0.05
CPNE3-210ENST00000621245 PIP4K2AP48426 406 aaPredicted RBP15.36■□□□□ 0.05
CPNE3-210ENST00000621245 EIF5P55010 431 aaKnown RBP15.36■□□□□ 0.05
CPNE3-210ENST00000621245 TTC5Q8N0Z6 440 aa15.36■□□□□ 0.05
CPNE3-210ENST00000621245 DCTN1Q14203 1278 aa15.35■□□□□ 0.05
CPNE3-210ENST00000621245 MCM10Q7L590 875 aa15.35■□□□□ 0.05
CPNE3-210ENST00000621245 ARFGEF2Q9Y6D5 1785 aa15.34■□□□□ 0.05
CPNE3-210ENST00000621245 A1BGP04217 495 aa15.34■□□□□ 0.05
CPNE3-210ENST00000621245 U2AF1L5P0DN76 240 aaPredicted RBP15.34■□□□□ 0.05
CPNE3-210ENST00000621245 U2AF1Q01081 240 aaKnown RBP eCLIP15.34■□□□□ 0.05
CPNE3-210ENST00000621245 TBC1D9BQ66K14 1250 aa15.34■□□□□ 0.05
CPNE3-210ENST00000621245 BICDL1Q6ZP65 573 aa15.34■□□□□ 0.05
CPNE3-210ENST00000621245 CCDC24Q8N4L8 307 aa15.34■□□□□ 0.05
CPNE3-210ENST00000621245 CFAP53Q96M91 514 aa15.34■□□□□ 0.05
CPNE3-210ENST00000621245 PIM2Q9P1W9 311 aa15.34■□□□□ 0.05
CPNE3-210ENST00000621245 FER1L6Q2WGJ9 1857 aa15.33■□□□□ 0.05
CPNE3-210ENST00000621245 TNRC6CQ9HCJ0 1690 aaKnown RBP15.33■□□□□ 0.04
CPNE3-210ENST00000621245 SERPINB2P05120 415 aa15.33■□□□□ 0.04
CPNE3-210ENST00000621245 PRELPP51888 382 aa15.33■□□□□ 0.04
CPNE3-210ENST00000621245 RASSF7Q02833 373 aa15.33■□□□□ 0.04
CPNE3-210ENST00000621245 DALRD3Q5D0E6 543 aaKnown RBP15.33■□□□□ 0.04
CPNE3-210ENST00000621245 C9orf131Q5VYM1 1079 aa15.33■□□□□ 0.04
CPNE3-210ENST00000621245 TBC1D2BQ9UPU7 963 aa15.33■□□□□ 0.04
CPNE3-210ENST00000621245 ZNF330Q9Y3S2 320 aaPredicted RBP15.33■□□□□ 0.04
CPNE3-210ENST00000621245 SLX4Q8IY92 1834 aa15.33■□□□□ 0.04
CPNE3-210ENST00000621245 BTBD11A6QL63 1104 aa15.32■□□□□ 0.04
CPNE3-210ENST00000621245 STARD3NLO95772 234 aa15.32■□□□□ 0.04
CPNE3-210ENST00000621245 NMRK2Q9NPI5 230 aa15.32■□□□□ 0.04
CPNE3-210ENST00000621245 DICER1Q9UPY3 1922 aaKnown RBP15.31■□□□□ 0.04
CPNE3-210ENST00000621245 FMNL2Q96PY5 1086 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms