RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 CNPY2Q9Y2B0 182 aa23.62■■□□□ 1.37
PDLIM3-212ENST00000620787 IGSF1Q8N6C5 1336 aa23.62■■□□□ 1.37
PDLIM3-212ENST00000620787 RAD50Q92878 1312 aa23.62■■□□□ 1.37
PDLIM3-212ENST00000620787 NUTM2FA1L443 756 aa23.62■■□□□ 1.37
PDLIM3-212ENST00000620787 MLECQ14165 292 aa23.62■■□□□ 1.37
PDLIM3-212ENST00000620787 SSH3Q8TE77 659 aa23.62■■□□□ 1.37
PDLIM3-212ENST00000620787 NUTM1Q86Y26 1132 aa23.61■■□□□ 1.37
PDLIM3-212ENST00000620787 TTC14Q96N46 770 aa23.61■■□□□ 1.37
PDLIM3-212ENST00000620787 USP25Q9UHP3 1055 aa23.61■■□□□ 1.37
PDLIM3-212ENST00000620787 EYA1Q99502 592 aa23.6■■□□□ 1.37
PDLIM3-212ENST00000620787 SNX14Q9Y5W7 946 aa23.6■■□□□ 1.37
PDLIM3-212ENST00000620787 TSPOAP1O95153 1857 aa23.6■■□□□ 1.37
PDLIM3-212ENST00000620787 CRYBG1Q9Y4K1 1723 aa23.6■■□□□ 1.37
PDLIM3-212ENST00000620787 ZSCAN22P10073 491 aaPredicted RBP23.6■■□□□ 1.37
PDLIM3-212ENST00000620787 SGSM2O43147 1006 aa23.59■■□□□ 1.37
PDLIM3-212ENST00000620787 HTATSF1O43719 755 aaKnown RBP23.59■■□□□ 1.37
PDLIM3-212ENST00000620787 PI4K2BQ8TCG2 481 aa23.59■■□□□ 1.37
PDLIM3-212ENST00000620787 UBTFL1P0CB47 393 aaPredicted RBP23.59■■□□□ 1.37
PDLIM3-212ENST00000620787 PIBF1Q8WXW3 757 aa23.59■■□□□ 1.37
PDLIM3-212ENST00000620787 ADAMTS13Q76LX8 1427 aa23.58■■□□□ 1.37
PDLIM3-212ENST00000620787 MAP4K4O95819 1239 aaPredicted RBP23.58■■□□□ 1.37
PDLIM3-212ENST00000620787 MYRIPQ8NFW9 859 aa23.58■■□□□ 1.37
PDLIM3-212ENST00000620787 MPNDQ8N594 471 aa23.58■■□□□ 1.37
PDLIM3-212ENST00000620787 ZNF830Q96NB3 372 aaPredicted RBP23.58■■□□□ 1.37
PDLIM3-212ENST00000620787 LSG1Q9H089 658 aaKnown RBP23.58■■□□□ 1.37
PDLIM3-212ENST00000620787 UBR1Q8IWV7 1749 aa23.57■■□□□ 1.36
PDLIM3-212ENST00000620787 HDGFP51858 240 aaKnown RBP23.57■■□□□ 1.36
PDLIM3-212ENST00000620787 RAB11FIP3O75154 756 aa23.57■■□□□ 1.36
PDLIM3-212ENST00000620787 LETM1O95202 739 aaPredicted RBP23.57■■□□□ 1.36
PDLIM3-212ENST00000620787 ADCY5O95622 1261 aa23.57■■□□□ 1.36
PDLIM3-212ENST00000620787 HCLS1P14317 486 aaPredicted RBP23.57■■□□□ 1.36
PDLIM3-212ENST00000620787 AK2P54819 239 aa23.57■■□□□ 1.36
PDLIM3-212ENST00000620787 UBE2HP62256 183 aa23.57■■□□□ 1.36
PDLIM3-212ENST00000620787 RUFY3Q7L099 469 aa23.57■■□□□ 1.36
PDLIM3-212ENST00000620787 POLA2Q14181 598 aa23.56■■□□□ 1.36
PDLIM3-212ENST00000620787 RASEFQ8IZ41 740 aa23.56■■□□□ 1.36
PDLIM3-212ENST00000620787 TTC21AQ8NDW8 1320 aa23.56■■□□□ 1.36
PDLIM3-212ENST00000620787 STX6O43752 255 aa23.56■■□□□ 1.36
PDLIM3-212ENST00000620787 SYT1P21579 422 aa23.56■■□□□ 1.36
PDLIM3-212ENST00000620787 NOLC1Q14978 699 aaKnown RBP eCLIP23.55■■□□□ 1.36
PDLIM3-212ENST00000620787 LIMCH1Q9UPQ0 1083 aa23.55■■□□□ 1.36
PDLIM3-212ENST00000620787 GNAT3A8MTJ3 354 aa23.55■■□□□ 1.36
PDLIM3-212ENST00000620787 PPP1R42Q7Z4L9 355 aa23.55■■□□□ 1.36
PDLIM3-212ENST00000620787 RHPN1Q8TCX5 695 aa23.55■■□□□ 1.36
PDLIM3-212ENST00000620787 PIK3C2AO00443 1686 aa23.54■■□□□ 1.36
PDLIM3-212ENST00000620787 TMEM2Q9UHN6 1383 aa23.54■■□□□ 1.36
PDLIM3-212ENST00000620787 SURF6O75683 361 aaKnown RBP23.54■■□□□ 1.36
PDLIM3-212ENST00000620787 F13A1P00488 732 aa23.54■■□□□ 1.36
PDLIM3-212ENST00000620787 DIP2BQ9P265 1576 aa23.54■■□□□ 1.36
PDLIM3-212ENST00000620787 DNTTIP2Q5QJE6 756 aaKnown RBP23.54■■□□□ 1.36
PDLIM3-212ENST00000620787 LARP6Q9BRS8 491 aaKnown RBP23.54■■□□□ 1.36
PDLIM3-212ENST00000620787 TTC12Q9H892 705 aaPredicted RBP23.54■■□□□ 1.36
PDLIM3-212ENST00000620787 PRIMPOLQ96LW4 560 aa23.53■■□□□ 1.36
PDLIM3-212ENST00000620787 FUCA2Q9BTY2 467 aa23.53■■□□□ 1.36
PDLIM3-212ENST00000620787 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.53■■□□□ 1.36
PDLIM3-212ENST00000620787 AMPHP49418 695 aa23.52■■□□□ 1.36
PDLIM3-212ENST00000620787 NWD1Q149M9 1564 aa23.52■■□□□ 1.36
PDLIM3-212ENST00000620787 ZBTB7CA1YPR0 619 aa23.52■■□□□ 1.36
PDLIM3-212ENST00000620787 RGPD8O14715 1765 aaPredicted RBP23.52■■□□□ 1.36
PDLIM3-212ENST00000620787 PTPRUQ92729 1446 aa23.52■■□□□ 1.36
PDLIM3-212ENST00000620787 KDM4AO75164 1064 aa23.51■■□□□ 1.35
PDLIM3-212ENST00000620787 CNTROBQ8N137 903 aa23.51■■□□□ 1.35
PDLIM3-212ENST00000620787 IL17REQ8NFR9 667 aa23.51■■□□□ 1.35
PDLIM3-212ENST00000620787 SPTLC3Q9NUV7 552 aa23.51■■□□□ 1.35
PDLIM3-212ENST00000620787 SMC3Q9UQE7 1217 aa23.51■■□□□ 1.35
PDLIM3-212ENST00000620787 FIBPO43427 364 aa23.51■■□□□ 1.35
PDLIM3-212ENST00000620787 TPRNQ4KMQ1 711 aa23.51■■□□□ 1.35
PDLIM3-212ENST00000620787 C17orf53Q8N3J3 647 aaPredicted RBP23.51■■□□□ 1.35
PDLIM3-212ENST00000620787 PHAXQ9H814 394 aaKnown RBP23.51■■□□□ 1.35
PDLIM3-212ENST00000620787 MAP3K5Q99683 1374 aa23.51■■□□□ 1.35
PDLIM3-212ENST00000620787 LARGE1O95461 756 aa23.5■■□□□ 1.35
PDLIM3-212ENST00000620787 FAM69CQ0P6D2 419 aa23.5■■□□□ 1.35
PDLIM3-212ENST00000620787 KIF1BPQ96EK5 621 aa23.5■■□□□ 1.35
PDLIM3-212ENST00000620787 GTF2F1P35269 517 aaKnown RBP eCLIP23.5■■□□□ 1.35
PDLIM3-212ENST00000620787 JARID2Q92833 1246 aaPredicted RBP23.5■■□□□ 1.35
PDLIM3-212ENST00000620787 ATP6V1DQ9Y5K8 247 aa23.5■■□□□ 1.35
PDLIM3-212ENST00000620787 HMGN5P82970 282 aaKnown RBP23.49■■□□□ 1.35
PDLIM3-212ENST00000620787 ARID3AQ99856 593 aa23.49■■□□□ 1.35
PDLIM3-212ENST00000620787 BABAM1Q9NWV8 329 aa23.49■■□□□ 1.35
PDLIM3-212ENST00000620787 CPA1P15085 419 aa23.49■■□□□ 1.35
PDLIM3-212ENST00000620787 TAF7Q15545 349 aaPredicted RBP23.49■■□□□ 1.35
PDLIM3-212ENST00000620787 KLHL34Q8N239 644 aa23.49■■□□□ 1.35
PDLIM3-212ENST00000620787 PRDM4Q9UKN5 801 aa23.49■■□□□ 1.35
PDLIM3-212ENST00000620787 CWC27Q6UX04 472 aaKnown RBP23.48■■□□□ 1.35
PDLIM3-212ENST00000620787 HYPKQ9NX55 129 aa23.48■■□□□ 1.35
PDLIM3-212ENST00000620787 SPG7Q9UQ90 795 aa23.48■■□□□ 1.35
PDLIM3-212ENST00000620787 TNRQ92752 1358 aa23.48■■□□□ 1.35
PDLIM3-212ENST00000620787 SRGAP3O43295 1099 aa23.48■■□□□ 1.35
PDLIM3-212ENST00000620787 CASTP20810 708 aaKnown RBP23.48■■□□□ 1.35
PDLIM3-212ENST00000620787 HDGFL1Q5TGJ6 251 aa23.48■■□□□ 1.35
PDLIM3-212ENST00000620787 GIMAP6Q6P9H5 292 aa23.48■■□□□ 1.35
PDLIM3-212ENST00000620787 MARF1Q9Y4F3 1742 aaKnown RBP23.47■■□□□ 1.35
PDLIM3-212ENST00000620787 USP42Q9H9J4 1324 aaKnown RBP23.47■■□□□ 1.35
PDLIM3-212ENST00000620787 AP5Z1O43299 807 aa23.47■■□□□ 1.35
PDLIM3-212ENST00000620787 SMAP1Q8IYB5 467 aaPredicted RBP23.47■■□□□ 1.35
PDLIM3-212ENST00000620787 ZNF710Q8N1W2 664 aa23.47■■□□□ 1.35
PDLIM3-212ENST00000620787 CCDC94Q9BW85 323 aaPredicted RBP23.47■■□□□ 1.35
PDLIM3-212ENST00000620787 MTMR6Q9Y217 621 aa23.47■■□□□ 1.35
PDLIM3-212ENST00000620787 GJB2P29033 226 aa23.46■■□□□ 1.35
PDLIM3-212ENST00000620787 CHD2O14647 1828 aaKnown RBP23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms