RNA–Protein interactions for RNA: ENST00000618819.4

PTPN9-206, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PTPN9, Length 7,813 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-206ENST00000618819 ARL1P40616 181 aaPredicted RBP16.72■□□□□ 0.27
PTPN9-206ENST00000618819 MVPQ14764 893 aaKnown RBP16.72■□□□□ 0.27
PTPN9-206ENST00000618819 ZSCAN29Q8IWY8 852 aaPredicted RBP16.72■□□□□ 0.27
PTPN9-206ENST00000618819 ARFGAP3Q9NP61 516 aa16.72■□□□□ 0.27
PTPN9-206ENST00000618819 FSIP1Q8NA03 581 aa16.72■□□□□ 0.27
PTPN9-206ENST00000618819 ZSCAN25Q6NSZ9 544 aa16.72■□□□□ 0.27
PTPN9-206ENST00000618819 KIF3CO14782 793 aa16.71■□□□□ 0.27
PTPN9-206ENST00000618819 KRT32Q14532 448 aa16.71■□□□□ 0.27
PTPN9-206ENST00000618819 FAM114A1Q8IWE2 563 aa16.71■□□□□ 0.27
PTPN9-206ENST00000618819 ANKS4BQ8N8V4 417 aa16.71■□□□□ 0.27
PTPN9-206ENST00000618819 KIF5BP33176 963 aa16.71■□□□□ 0.27
PTPN9-206ENST00000618819 SARNPP82979 210 aaKnown RBP16.71■□□□□ 0.27
PTPN9-206ENST00000618819 BRD4O60885 1362 aaPredicted RBP16.71■□□□□ 0.27
PTPN9-206ENST00000618819 VGLL3A8MV65 326 aa16.71■□□□□ 0.27
PTPN9-206ENST00000618819 CKAP4Q07065 602 aaKnown RBP16.71■□□□□ 0.27
PTPN9-206ENST00000618819 RSRC1Q96IZ7 334 aaKnown RBP16.71■□□□□ 0.27
PTPN9-206ENST00000618819 SRGAP3O43295 1099 aa16.71■□□□□ 0.27
PTPN9-206ENST00000618819 CCT4P50991 539 aaKnown RBP16.71■□□□□ 0.27
PTPN9-206ENST00000618819 RAB3IL1Q8TBN0 382 aa16.71■□□□□ 0.27
PTPN9-206ENST00000618819 ZEB2O60315 1214 aa16.71■□□□□ 0.26
PTPN9-206ENST00000618819 SRCIN1Q9C0H9 1055 aa16.71■□□□□ 0.26
PTPN9-206ENST00000618819 CTNNA3Q9UI47 895 aa16.71■□□□□ 0.26
PTPN9-206ENST00000618819 SCAND2PQ9GZW5 306 aaPredicted RBP16.7■□□□□ 0.26
PTPN9-206ENST00000618819 ZBTB16Q05516 673 aa16.7■□□□□ 0.26
PTPN9-206ENST00000618819 HDGFL1Q5TGJ6 251 aa16.7■□□□□ 0.26
PTPN9-206ENST00000618819 CCDC114Q96M63 670 aa16.7■□□□□ 0.26
PTPN9-206ENST00000618819 SMIM23A6NLE4 172 aa16.7■□□□□ 0.26
PTPN9-206ENST00000618819 STX1AQ16623 288 aa16.7■□□□□ 0.26
PTPN9-206ENST00000618819 KIAA0753Q2KHM9 967 aa16.7■□□□□ 0.26
PTPN9-206ENST00000618819 TCERG1LQ5VWI1 586 aa16.7■□□□□ 0.26
PTPN9-206ENST00000618819 FERMT2Q96AC1 680 aa16.7■□□□□ 0.26
PTPN9-206ENST00000618819 SMC6Q96SB8 1091 aa16.7■□□□□ 0.26
PTPN9-206ENST00000618819 IQCGQ9H095 443 aaKnown RBP16.7■□□□□ 0.26
PTPN9-206ENST00000618819 PHACTR2O75167 634 aa16.69■□□□□ 0.26
PTPN9-206ENST00000618819 PANK2Q9BZ23 570 aa16.69■□□□□ 0.26
PTPN9-206ENST00000618819 CCDC171Q6TFL3 1326 aa16.69■□□□□ 0.26
PTPN9-206ENST00000618819 C8orf76Q96K31 380 aa16.69■□□□□ 0.26
PTPN9-206ENST00000618819 IDH1O75874 414 aaKnown RBP16.69■□□□□ 0.26
PTPN9-206ENST00000618819 TFIP11Q9UBB9 837 aaKnown RBP16.69■□□□□ 0.26
PTPN9-206ENST00000618819 SMARCA5O60264 1052 aaPredicted RBP16.69■□□□□ 0.26
PTPN9-206ENST00000618819 DNAI1Q9UI46 699 aa16.69■□□□□ 0.26
PTPN9-206ENST00000618819 ANAPC4Q9UJX5 808 aa16.69■□□□□ 0.26
PTPN9-206ENST00000618819 CWC25Q9NXE8 425 aaPredicted RBP16.69■□□□□ 0.26
PTPN9-206ENST00000618819 FGFR1OPO95684 399 aaKnown RBP16.69■□□□□ 0.26
PTPN9-206ENST00000618819 MMRN2Q9H8L6 949 aa16.69■□□□□ 0.26
PTPN9-206ENST00000618819 FAM114A2Q9NRY5 505 aa16.69■□□□□ 0.26
PTPN9-206ENST00000618819 FEZ2Q9UHY8 353 aaPredicted RBP16.69■□□□□ 0.26
PTPN9-206ENST00000618819 CCDC18Q5T9S5 1454 aa16.68■□□□□ 0.26
PTPN9-206ENST00000618819 CARMIL2Q6F5E8 1435 aa16.68■□□□□ 0.26
PTPN9-206ENST00000618819 CCDC63Q8NA47 563 aa16.68■□□□□ 0.26
PTPN9-206ENST00000618819 CCDC85AQ96PX6 553 aaPredicted RBP16.68■□□□□ 0.26
PTPN9-206ENST00000618819 PRC1O43663 620 aa16.68■□□□□ 0.26
PTPN9-206ENST00000618819 RFC1P35251 1148 aaPredicted RBP16.68■□□□□ 0.26
PTPN9-206ENST00000618819 CEP120Q8N960 986 aa16.68■□□□□ 0.26
PTPN9-206ENST00000618819 GOLGA6L9A6NEM1 432 aa16.68■□□□□ 0.26
PTPN9-206ENST00000618819 HSP90AA4PQ58FG1 418 aa16.68■□□□□ 0.26
PTPN9-206ENST00000618819 ATF7IPQ6VMQ6 1270 aa16.68■□□□□ 0.26
PTPN9-206ENST00000618819 TRMT1LQ7Z2T5 733 aaKnown RBP16.68■□□□□ 0.26
PTPN9-206ENST00000618819 PUF60Q9UHX1 559 aaKnown RBP16.68■□□□□ 0.26
PTPN9-206ENST00000618819 MCM5P33992 734 aa16.68■□□□□ 0.26
PTPN9-206ENST00000618819 CCDC40Q4G0X9 1142 aa16.68■□□□□ 0.26
PTPN9-206ENST00000618819 GTPBP4Q9BZE4 634 aaKnown RBP16.68■□□□□ 0.26
PTPN9-206ENST00000618819 SEC63Q9UGP8 760 aaKnown RBP16.68■□□□□ 0.26
PTPN9-206ENST00000618819 EBAG9O00559 213 aa16.67■□□□□ 0.26
PTPN9-206ENST00000618819 PPP2R1AP30153 589 aa16.67■□□□□ 0.26
PTPN9-206ENST00000618819 CTAGE5O15320 804 aa16.67■□□□□ 0.26
PTPN9-206ENST00000618819 PDE1CQ14123 709 aaPredicted RBP16.67■□□□□ 0.26
PTPN9-206ENST00000618819 RASSF4Q9H2L5 321 aa16.67■□□□□ 0.26
PTPN9-206ENST00000618819 ZFYP08048 801 aaPredicted RBP16.67■□□□□ 0.26
PTPN9-206ENST00000618819 CCDC150Q8NCX0 1101 aa16.67■□□□□ 0.26
PTPN9-206ENST00000618819 MPHOSPH8Q99549 860 aa16.67■□□□□ 0.26
PTPN9-206ENST00000618819 CTAGE15A4D2H0 777 aa16.67■□□□□ 0.26
PTPN9-206ENST00000618819 CTAGE8P0CG41 777 aa16.67■□□□□ 0.26
PTPN9-206ENST00000618819 CTAGE6Q86UF2 777 aa16.67■□□□□ 0.26
PTPN9-206ENST00000618819 CTAGE4Q8IX94 777 aa16.67■□□□□ 0.26
PTPN9-206ENST00000618819 LRP2BPQ9P2M1 347 aa16.67■□□□□ 0.26
PTPN9-206ENST00000618819 NOLC1Q14978 699 aaKnown RBP eCLIP16.66■□□□□ 0.26
PTPN9-206ENST00000618819 AIDAQ96BJ3 306 aa16.66■□□□□ 0.26
PTPN9-206ENST00000618819 ZSCAN23Q3MJ62 389 aa16.66■□□□□ 0.26
PTPN9-206ENST00000618819 PPP1R1BQ9UD71 204 aaPredicted RBP16.66■□□□□ 0.26
PTPN9-206ENST00000618819 FLIIQ13045 1269 aa16.66■□□□□ 0.26
PTPN9-206ENST00000618819 SEPT14Q6ZU15 432 aa16.66■□□□□ 0.26
PTPN9-206ENST00000618819 GAS2L2Q8NHY3 880 aa16.66■□□□□ 0.26
PTPN9-206ENST00000618819 FAM184BQ9ULE4 1060 aa16.66■□□□□ 0.26
PTPN9-206ENST00000618819 PABPN1LA6NDY0 278 aaKnown RBP16.66■□□□□ 0.26
PTPN9-206ENST00000618819 CCT2P78371 535 aaKnown RBP16.66■□□□□ 0.26
PTPN9-206ENST00000618819 KRBA2Q6ZNG9 492 aa16.66■□□□□ 0.26
PTPN9-206ENST00000618819 TTC36A6NLP5 189 aa16.65■□□□□ 0.26
PTPN9-206ENST00000618819 ERCC3P19447 782 aa16.65■□□□□ 0.26
PTPN9-206ENST00000618819 RGS22Q8NE09 1264 aa16.65■□□□□ 0.26
PTPN9-206ENST00000618819 EXOC6BQ9Y2D4 811 aa16.65■□□□□ 0.26
PTPN9-206ENST00000618819 OPA1O60313 960 aa16.65■□□□□ 0.26
PTPN9-206ENST00000618819 ZNF165P49910 485 aa16.65■□□□□ 0.26
PTPN9-206ENST00000618819 PPFIA3O75145 1194 aa16.65■□□□□ 0.26
PTPN9-206ENST00000618819 PAXIP1Q6ZW49 1069 aaPredicted RBP16.65■□□□□ 0.26
PTPN9-206ENST00000618819 CCDC94Q9BW85 323 aaPredicted RBP16.65■□□□□ 0.26
PTPN9-206ENST00000618819 MINDY4BA8MYZ0 360 aa16.65■□□□□ 0.26
PTPN9-206ENST00000618819 HCLS1P14317 486 aaPredicted RBP16.65■□□□□ 0.26
PTPN9-206ENST00000618819 MAP7D1Q3KQU3 841 aa16.65■□□□□ 0.26
PTPN9-206ENST00000618819 FHOD3Q2V2M9 1422 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms