RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 ARFGEF1Q9Y6D6 1849 aa33.67■■■□□ 2.98
PTPRF-216ENST00000617451 COL3A1P02461 1466 aaPredicted RBP33.65■■■□□ 2.98
PTPRF-216ENST00000617451 COL15A1P39059 1388 aa33.65■■■□□ 2.98
PTPRF-216ENST00000617451 CHRNA5P30532 468 aa33.65■■■□□ 2.98
PTPRF-216ENST00000617451 C9orf131Q5VYM1 1079 aa33.63■■■□□ 2.97
PTPRF-216ENST00000617451 NFIXQ14938 502 aa33.62■■■□□ 2.97
PTPRF-216ENST00000617451 U2SURPO15042 1029 aaKnown RBP33.61■■■□□ 2.97
PTPRF-216ENST00000617451 UBR2Q8IWV8 1755 aa33.6■■■□□ 2.97
PTPRF-216ENST00000617451 CNGB1Q14028 1251 aaPredicted RBP33.6■■■□□ 2.97
PTPRF-216ENST00000617451 BCL2L12Q9HB09 334 aa33.6■■■□□ 2.97
PTPRF-216ENST00000617451 TOMM70O94826 608 aa33.59■■■□□ 2.97
PTPRF-216ENST00000617451 TTC5Q8N0Z6 440 aa33.59■■■□□ 2.97
PTPRF-216ENST00000617451 IL17REQ8NFR9 667 aa33.59■■■□□ 2.97
PTPRF-216ENST00000617451 NMRK2Q9NPI5 230 aa33.59■■■□□ 2.97
PTPRF-216ENST00000617451 GAS2L2Q8NHY3 880 aa33.58■■■□□ 2.97
PTPRF-216ENST00000617451 GNAT3A8MTJ3 354 aa33.57■■■□□ 2.96
PTPRF-216ENST00000617451 STARD3NLO95772 234 aa33.57■■■□□ 2.96
PTPRF-216ENST00000617451 CANXP27824 592 aaKnown RBP33.57■■■□□ 2.96
PTPRF-216ENST00000617451 SERPINB2P05120 415 aa33.55■■■□□ 2.96
PTPRF-216ENST00000617451 EIF5P55010 431 aaKnown RBP33.55■■■□□ 2.96
PTPRF-216ENST00000617451 TEFQ10587 303 aa33.55■■■□□ 2.96
PTPRF-216ENST00000617451 AFDNP55196 1824 aaKnown RBP33.55■■■□□ 2.96
PTPRF-216ENST00000617451 NRXN2Q9P2S2 1712 aa33.54■■■□□ 2.96
PTPRF-216ENST00000617451 ZNF790Q6PG37 636 aa33.54■■■□□ 2.96
PTPRF-216ENST00000617451 ZNF496Q96IT1 587 aaPredicted RBP33.54■■■□□ 2.96
PTPRF-216ENST00000617451 RNF181Q9P0P0 153 aa33.53■■■□□ 2.96
PTPRF-216ENST00000617451 HEG1Q9ULI3 1381 aa33.51■■■□□ 2.96
PTPRF-216ENST00000617451 TEX13AQ9BXU3 409 aaPredicted RBP33.51■■■□□ 2.95
PTPRF-216ENST00000617451 A0A087WZG4 1122 aa33.5■■■□□ 2.95
PTPRF-216ENST00000617451 APLP1P51693 650 aa33.5■■■□□ 2.95
PTPRF-216ENST00000617451 CEMIPQ8WUJ3 1361 aa33.47■■■□□ 2.95
PTPRF-216ENST00000617451 SIPA1L3O60292 1781 aaPredicted RBP33.47■■■□□ 2.95
PTPRF-216ENST00000617451 PHACTR3Q96KR7 559 aa33.47■■■□□ 2.95
PTPRF-216ENST00000617451 KDM2BQ8NHM5 1336 aa33.47■■■□□ 2.95
PTPRF-216ENST00000617451 SBF1O95248 1867 aa33.46■■■□□ 2.95
PTPRF-216ENST00000617451 RBM46Q8TBY0 533 aaKnown RBP33.46■■■□□ 2.95
PTPRF-216ENST00000617451 PRKAR2BP31323 418 aa33.45■■■□□ 2.95
PTPRF-216ENST00000617451 BICDL1Q6ZP65 573 aa33.45■■■□□ 2.95
PTPRF-216ENST00000617451 C2CD5Q86YS7 1000 aa33.45■■■□□ 2.95
PTPRF-216ENST00000617451 TTLL6Q8N841 843 aa33.45■■■□□ 2.95
PTPRF-216ENST00000617451 CFAP53Q96M91 514 aa33.45■■■□□ 2.95
PTPRF-216ENST00000617451 FMNL2Q96PY5 1086 aa33.45■■■□□ 2.95
PTPRF-216ENST00000617451 RSPH6AQ9H0K4 717 aa33.45■■■□□ 2.95
PTPRF-216ENST00000617451 CARMIL3Q8ND23 1372 aa33.44■■■□□ 2.94
PTPRF-216ENST00000617451 DLEC1Q9Y238 1755 aa33.43■■■□□ 2.94
PTPRF-216ENST00000617451 H0YIN7 160 aa33.43■■■□□ 2.94
PTPRF-216ENST00000617451 IL6STP40189 918 aaPredicted RBP33.43■■■□□ 2.94
PTPRF-216ENST00000617451 RASSF7Q02833 373 aa33.43■■■□□ 2.94
PTPRF-216ENST00000617451 TBC1D9BQ66K14 1250 aa33.43■■■□□ 2.94
PTPRF-216ENST00000617451 C16orf71Q8IYS4 520 aaPredicted RBP33.43■■■□□ 2.94
PTPRF-216ENST00000617451 IFFO2Q5TF58 517 aa33.42■■■□□ 2.94
PTPRF-216ENST00000617451 TBC1D2BQ9UPU7 963 aa33.42■■■□□ 2.94
PTPRF-216ENST00000617451 ZC3H4Q9UPT8 1303 aaKnown RBP33.4■■■□□ 2.94
PTPRF-216ENST00000617451 BTBD11A6QL63 1104 aa33.4■■■□□ 2.94
PTPRF-216ENST00000617451 A1BGP04217 495 aa33.4■■■□□ 2.94
PTPRF-216ENST00000617451 DNAJC5GQ8N7S2 189 aa33.4■■■□□ 2.94
PTPRF-216ENST00000617451 RRAGCQ9HB90 399 aa33.4■■■□□ 2.94
PTPRF-216ENST00000617451 ZNF330Q9Y3S2 320 aaPredicted RBP33.4■■■□□ 2.94
PTPRF-216ENST00000617451 KCNQ3O43525 872 aa33.39■■■□□ 2.94
PTPRF-216ENST00000617451 LMNB1P20700 586 aa33.39■■■□□ 2.94
PTPRF-216ENST00000617451 NUDCQ9Y266 331 aa33.39■■■□□ 2.94
PTPRF-216ENST00000617451 PRELPP51888 382 aa33.38■■■□□ 2.93
PTPRF-216ENST00000617451 SCN7AQ01118 1682 aa33.37■■■□□ 2.93
PTPRF-216ENST00000617451 FSTL1Q12841 308 aa33.37■■■□□ 2.93
PTPRF-216ENST00000617451 BRIP1Q9BX63 1249 aa33.37■■■□□ 2.93
PTPRF-216ENST00000617451 PDZRN3Q9UPQ7 1066 aa33.36■■■□□ 2.93
PTPRF-216ENST00000617451 PPP2R1AP30153 589 aa33.35■■■□□ 2.93
PTPRF-216ENST00000617451 PRR5LQ6MZQ0 368 aa33.35■■■□□ 2.93
PTPRF-216ENST00000617451 U2AF1L5P0DN76 240 aaPredicted RBP33.34■■■□□ 2.93
PTPRF-216ENST00000617451 PDE6BP35913 854 aa33.34■■■□□ 2.93
PTPRF-216ENST00000617451 U2AF1Q01081 240 aaKnown RBP eCLIP33.34■■■□□ 2.93
PTPRF-216ENST00000617451 NPM2Q86SE8 214 aaKnown RBP33.34■■■□□ 2.93
PTPRF-216ENST00000617451 TNRC6CQ9HCJ0 1690 aaKnown RBP33.33■■■□□ 2.93
PTPRF-216ENST00000617451 NFKBIEO00221 500 aa33.33■■■□□ 2.93
PTPRF-216ENST00000617451 CAMTA2O94983 1202 aa33.33■■■□□ 2.93
PTPRF-216ENST00000617451 ANKRD31Q8N7Z5 1873 aa33.33■■■□□ 2.93
PTPRF-216ENST00000617451 USP16Q9Y5T5 823 aa33.32■■■□□ 2.92
PTPRF-216ENST00000617451 CCDC24Q8N4L8 307 aa33.31■■■□□ 2.92
PTPRF-216ENST00000617451 ZNF622Q969S3 477 aaKnown RBP eCLIP33.31■■■□□ 2.92
PTPRF-216ENST00000617451 SETDB2Q96T68 719 aa33.31■■■□□ 2.92
PTPRF-216ENST00000617451 GLTPD2A6NH11 291 aa33.3■■■□□ 2.92
PTPRF-216ENST00000617451 RTF1Q92541 710 aaKnown RBP33.3■■■□□ 2.92
PTPRF-216ENST00000617451 MCM10Q7L590 875 aa33.29■■■□□ 2.92
PTPRF-216ENST00000617451 DZIP3Q86Y13 1208 aaKnown RBP33.29■■■□□ 2.92
PTPRF-216ENST00000617451 WDR90Q96KV7 1748 aa33.28■■■□□ 2.92
PTPRF-216ENST00000617451 PRAMEF22A3QJZ6 481 aa33.27■■■□□ 2.92
PTPRF-216ENST00000617451 CNBD1Q8NA66 436 aa33.27■■■□□ 2.92
PTPRF-216ENST00000617451 SNRPA1P09661 255 aaKnown RBP33.26■■■□□ 2.91
PTPRF-216ENST00000617451 PIP4K2AP48426 406 aaPredicted RBP33.26■■■□□ 2.91
PTPRF-216ENST00000617451 C21orf2O43822 256 aa33.25■■■□□ 2.91
PTPRF-216ENST00000617451 SMC1BQ8NDV3 1235 aa33.25■■■□□ 2.91
PTPRF-216ENST00000617451 COL11A2P13942 1736 aaPredicted RBP33.25■■■□□ 2.91
PTPRF-216ENST00000617451 HTATSF1O43719 755 aaKnown RBP33.24■■■□□ 2.91
PTPRF-216ENST00000617451 VEGFAP15692 232 aaPredicted RBP33.24■■■□□ 2.91
PTPRF-216ENST00000617451 HTRA3P83110 453 aa33.24■■■□□ 2.91
PTPRF-216ENST00000617451 CCDC88AQ3V6T2 1871 aa33.24■■■□□ 2.91
PTPRF-216ENST00000617451 DCTN1Q14203 1278 aa33.23■■■□□ 2.91
PTPRF-216ENST00000617451 CLEC4GQ6UXB4 293 aa33.23■■■□□ 2.91
PTPRF-216ENST00000617451 ZNF219Q9P2Y4 722 aaPredicted RBP33.23■■■□□ 2.91
PTPRF-216ENST00000617451 BCORQ6W2J9 1755 aa33.23■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms