RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 ARHGAP27Q6ZUM4 889 aa25.51■■□□□ 1.67
CDX1-202ENST00000616154 PIM2Q9P1W9 311 aa25.51■■□□□ 1.67
CDX1-202ENST00000616154 NRXN2Q9P2S2 1712 aa25.51■■□□□ 1.67
CDX1-202ENST00000616154 NARFQ9UHQ1 456 aa25.5■■□□□ 1.67
CDX1-202ENST00000616154 ZBTB1Q9Y2K1 713 aa25.5■■□□□ 1.67
CDX1-202ENST00000616154 KIF3CO14782 793 aa25.49■■□□□ 1.67
CDX1-202ENST00000616154 U2SURPO15042 1029 aaKnown RBP25.49■■□□□ 1.67
CDX1-202ENST00000616154 CNGB1Q14028 1251 aaPredicted RBP25.48■■□□□ 1.67
CDX1-202ENST00000616154 GAS2L2Q8NHY3 880 aa25.48■■□□□ 1.67
CDX1-202ENST00000616154 DALRD3Q5D0E6 543 aaKnown RBP25.47■■□□□ 1.67
CDX1-202ENST00000616154 TTC5Q8N0Z6 440 aa25.47■■□□□ 1.67
CDX1-202ENST00000616154 GNAT3A8MTJ3 354 aa25.46■■□□□ 1.67
CDX1-202ENST00000616154 HSPA6P17066 643 aa25.46■■□□□ 1.67
CDX1-202ENST00000616154 DLEC1Q9Y238 1755 aa25.46■■□□□ 1.67
CDX1-202ENST00000616154 NFIXQ14938 502 aa25.45■■□□□ 1.66
CDX1-202ENST00000616154 IL17REQ8NFR9 667 aa25.45■■□□□ 1.66
CDX1-202ENST00000616154 CHRNA5P30532 468 aa25.44■■□□□ 1.66
CDX1-202ENST00000616154 TEFQ10587 303 aa25.44■■□□□ 1.66
CDX1-202ENST00000616154 BCL2L12Q9HB09 334 aa25.44■■□□□ 1.66
CDX1-202ENST00000616154 SBF1O95248 1867 aa25.43■■□□□ 1.66
CDX1-202ENST00000616154 STARD3NLO95772 234 aa25.43■■□□□ 1.66
CDX1-202ENST00000616154 CANXP27824 592 aaKnown RBP25.42■■□□□ 1.66
CDX1-202ENST00000616154 ZNF790Q6PG37 636 aa25.42■■□□□ 1.66
CDX1-202ENST00000616154 ZNF496Q96IT1 587 aaPredicted RBP25.42■■□□□ 1.66
CDX1-202ENST00000616154 HEG1Q9ULI3 1381 aa25.42■■□□□ 1.66
CDX1-202ENST00000616154 SCN7AQ01118 1682 aa25.42■■□□□ 1.66
CDX1-202ENST00000616154 EIF5P55010 431 aaKnown RBP25.41■■□□□ 1.66
CDX1-202ENST00000616154 C9orf131Q5VYM1 1079 aa25.41■■□□□ 1.66
CDX1-202ENST00000616154 CFAP53Q96M91 514 aa25.41■■□□□ 1.66
CDX1-202ENST00000616154 CEMIPQ8WUJ3 1361 aa25.41■■□□□ 1.66
CDX1-202ENST00000616154 A0A087WZG4 1122 aa25.39■■□□□ 1.66
CDX1-202ENST00000616154 TEX13AQ9BXU3 409 aaPredicted RBP25.39■■□□□ 1.66
CDX1-202ENST00000616154 RSPH6AQ9H0K4 717 aa25.39■■□□□ 1.66
CDX1-202ENST00000616154 SERPINB2P05120 415 aa25.38■■□□□ 1.65
CDX1-202ENST00000616154 PRKAR2BP31323 418 aa25.38■■□□□ 1.65
CDX1-202ENST00000616154 PHACTR3Q96KR7 559 aa25.38■■□□□ 1.65
CDX1-202ENST00000616154 TOMM70O94826 608 aa25.37■■□□□ 1.65
CDX1-202ENST00000616154 FMNL2Q96PY5 1086 aa25.37■■□□□ 1.65
CDX1-202ENST00000616154 NMRK2Q9NPI5 230 aa25.37■■□□□ 1.65
CDX1-202ENST00000616154 NUDCQ9Y266 331 aa25.36■■□□□ 1.65
CDX1-202ENST00000616154 ANKRD31Q8N7Z5 1873 aa25.35■■□□□ 1.65
CDX1-202ENST00000616154 RNF181Q9P0P0 153 aa25.35■■□□□ 1.65
CDX1-202ENST00000616154 CARMIL3Q8ND23 1372 aa25.34■■□□□ 1.65
CDX1-202ENST00000616154 PPP2R1AP30153 589 aa25.34■■□□□ 1.65
CDX1-202ENST00000616154 IL6STP40189 918 aaPredicted RBP25.34■■□□□ 1.65
CDX1-202ENST00000616154 BCORQ6W2J9 1755 aa25.33■■□□□ 1.64
CDX1-202ENST00000616154 TNRC6CQ9HCJ0 1690 aaKnown RBP25.32■■□□□ 1.64
CDX1-202ENST00000616154 BTBD11A6QL63 1104 aa25.32■■□□□ 1.64
CDX1-202ENST00000616154 TBC1D9BQ66K14 1250 aa25.31■■□□□ 1.64
CDX1-202ENST00000616154 BICDL1Q6ZP65 573 aa25.31■■□□□ 1.64
CDX1-202ENST00000616154 C2CD5Q86YS7 1000 aa25.31■■□□□ 1.64
CDX1-202ENST00000616154 KDM2BQ8NHM5 1336 aa25.31■■□□□ 1.64
CDX1-202ENST00000616154 KCNQ3O43525 872 aa25.3■■□□□ 1.64
CDX1-202ENST00000616154 U2AF1L5P0DN76 240 aaPredicted RBP25.3■■□□□ 1.64
CDX1-202ENST00000616154 U2AF1Q01081 240 aaKnown RBP eCLIP25.3■■□□□ 1.64
CDX1-202ENST00000616154 TTLL6Q8N841 843 aa25.3■■□□□ 1.64
CDX1-202ENST00000616154 TBC1D2BQ9UPU7 963 aa25.3■■□□□ 1.64
CDX1-202ENST00000616154 ZNF330Q9Y3S2 320 aaPredicted RBP25.3■■□□□ 1.64
CDX1-202ENST00000616154 CCDC88AQ3V6T2 1871 aa25.3■■□□□ 1.64
CDX1-202ENST00000616154 COL11A2P13942 1736 aaPredicted RBP25.29■■□□□ 1.64
CDX1-202ENST00000616154 H0YIN7 160 aa25.29■■□□□ 1.64
CDX1-202ENST00000616154 A1BGP04217 495 aa25.29■■□□□ 1.64
CDX1-202ENST00000616154 ZC3H4Q9UPT8 1303 aaKnown RBP25.29■■□□□ 1.64
CDX1-202ENST00000616154 APLP1P51693 650 aa25.28■■□□□ 1.64
CDX1-202ENST00000616154 RASSF7Q02833 373 aa25.28■■□□□ 1.64
CDX1-202ENST00000616154 RBM46Q8TBY0 533 aaKnown RBP25.28■■□□□ 1.64
CDX1-202ENST00000616154 PDZRN3Q9UPQ7 1066 aa25.27■■□□□ 1.64
CDX1-202ENST00000616154 TIAM2Q8IVF5 1701 aa25.26■■□□□ 1.63
CDX1-202ENST00000616154 PRR5LQ6MZQ0 368 aa25.26■■□□□ 1.63
CDX1-202ENST00000616154 NPM2Q86SE8 214 aaKnown RBP25.26■■□□□ 1.63
CDX1-202ENST00000616154 RTF1Q92541 710 aaKnown RBP25.26■■□□□ 1.63
CDX1-202ENST00000616154 BRIP1Q9BX63 1249 aa25.26■■□□□ 1.63
CDX1-202ENST00000616154 CAMTA2O94983 1202 aa25.25■■□□□ 1.63
CDX1-202ENST00000616154 LMNB1P20700 586 aa25.25■■□□□ 1.63
CDX1-202ENST00000616154 C16orf71Q8IYS4 520 aaPredicted RBP25.25■■□□□ 1.63
CDX1-202ENST00000616154 WDR90Q96KV7 1748 aa25.24■■□□□ 1.63
CDX1-202ENST00000616154 PDE6BP35913 854 aa25.24■■□□□ 1.63
CDX1-202ENST00000616154 MCM10Q7L590 875 aa25.24■■□□□ 1.63
CDX1-202ENST00000616154 USP16Q9Y5T5 823 aa25.24■■□□□ 1.63
CDX1-202ENST00000616154 FER1L6Q2WGJ9 1857 aa25.23■■□□□ 1.63
CDX1-202ENST00000616154 HTATSF1O43719 755 aaKnown RBP25.23■■□□□ 1.63
CDX1-202ENST00000616154 PRELPP51888 382 aa25.23■■□□□ 1.63
CDX1-202ENST00000616154 DZIP3Q86Y13 1208 aaKnown RBP25.22■■□□□ 1.63
CDX1-202ENST00000616154 SETDB2Q96T68 719 aa25.22■■□□□ 1.63
CDX1-202ENST00000616154 DLG5Q8TDM6 1919 aa25.22■■□□□ 1.63
CDX1-202ENST00000616154 ARFGEF2Q9Y6D5 1785 aa25.22■■□□□ 1.63
CDX1-202ENST00000616154 DICER1Q9UPY3 1922 aaKnown RBP25.21■■□□□ 1.63
CDX1-202ENST00000616154 SNRPA1P09661 255 aaKnown RBP25.21■■□□□ 1.63
CDX1-202ENST00000616154 RRAGCQ9HB90 399 aa25.21■■□□□ 1.63
CDX1-202ENST00000616154 PRAMEF22A3QJZ6 481 aa25.2■■□□□ 1.62
CDX1-202ENST00000616154 NFKBIEO00221 500 aa25.2■■□□□ 1.62
CDX1-202ENST00000616154 FSTL1Q12841 308 aa25.2■■□□□ 1.62
CDX1-202ENST00000616154 CNBD1Q8NA66 436 aa25.2■■□□□ 1.62
CDX1-202ENST00000616154 ZNF622Q969S3 477 aaKnown RBP eCLIP25.2■■□□□ 1.62
CDX1-202ENST00000616154 LAMB4A4D0S4 1761 aa25.2■■□□□ 1.62
CDX1-202ENST00000616154 CACNA1SQ13698 1873 aa25.2■■□□□ 1.62
CDX1-202ENST00000616154 DCTN1Q14203 1278 aa25.19■■□□□ 1.62
CDX1-202ENST00000616154 CCDC24Q8N4L8 307 aa25.19■■□□□ 1.62
CDX1-202ENST00000616154 PIP4K2AP48426 406 aaPredicted RBP25.18■■□□□ 1.62
CDX1-202ENST00000616154 ST5P78524 1137 aa25.17■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms