RNA–Protein interactions for RNA: ENST00000615606.4

CLTCL1-208, Transcript of clathrin heavy chain like 1, human

TSL 1 (best)

Gene CLTCL1, Length 4,994 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLTCL1-208	ENST00000615606	LDHAL6A	Q6ZMR3	332 aa		11.25	□□□□□ -0.61
CLTCL1-208	ENST00000615606	COPS6	Q7L5N1	327 aa		11.25	□□□□□ -0.61
CLTCL1-208	ENST00000615606	SLF2	Q8IX21	1173 aa		11.25	□□□□□ -0.61
CLTCL1-208	ENST00000615606	TRIM22	Q8IYM9	498 aa		11.25	□□□□□ -0.61
CLTCL1-208	ENST00000615606	SETDB2	Q96T68	719 aa		11.25	□□□□□ -0.61
CLTCL1-208	ENST00000615606	ZNF287	Q9HBT7	754 aa		11.25	□□□□□ -0.61
CLTCL1-208	ENST00000615606	KDM6B	O15054	1643 aa		11.25	□□□□□ -0.61
CLTCL1-208	ENST00000615606	TMEM94	Q12767	1356 aa		11.25	□□□□□ -0.61
CLTCL1-208	ENST00000615606	RNMT	O43148	476 aa	Known RBP	11.25	□□□□□ -0.61
CLTCL1-208	ENST00000615606	PER1	O15534	1290 aa	Predicted RBP	11.25	□□□□□ -0.61
CLTCL1-208	ENST00000615606	ANXA1	P04083	346 aa		11.25	□□□□□ -0.61
CLTCL1-208	ENST00000615606	CLASP1	Q7Z460	1538 aa		11.24	□□□□□ -0.61
CLTCL1-208	ENST00000615606	BLOC1S2	Q6QNY1	142 aa		11.24	□□□□□ -0.61
CLTCL1-208	ENST00000615606	DZIP1	Q86YF9	867 aa	Known RBP	11.24	□□□□□ -0.61
CLTCL1-208	ENST00000615606	UBAC1	Q9BSL1	405 aa		11.24	□□□□□ -0.61
CLTCL1-208	ENST00000615606	KSR2	Q6VAB6	950 aa		11.24	□□□□□ -0.61
CLTCL1-208	ENST00000615606	PLEKHH1	Q9ULM0	1364 aa		11.24	□□□□□ -0.61
CLTCL1-208	ENST00000615606	C6orf229	H3BNL8	230 aa		11.24	□□□□□ -0.61
CLTCL1-208	ENST00000615606	IMMT	Q16891	758 aa	Known RBP	11.24	□□□□□ -0.61
CLTCL1-208	ENST00000615606	ANKRD20A12P	Q8NF67	263 aa		11.24	□□□□□ -0.61
CLTCL1-208	ENST00000615606	RSPH6A	Q9H0K4	717 aa		11.24	□□□□□ -0.61
CLTCL1-208	ENST00000615606	SBNO2	Q9Y2G9	1366 aa		11.24	□□□□□ -0.61
CLTCL1-208	ENST00000615606	TSR1	Q2NL82	804 aa	Known RBP	11.24	□□□□□ -0.61
CLTCL1-208	ENST00000615606	BOLA2	Q9H3K6	86 aa		11.23	□□□□□ -0.61
CLTCL1-208	ENST00000615606	RTCB	Q9Y3I0	505 aa	Known RBP	11.23	□□□□□ -0.61
CLTCL1-208	ENST00000615606	MYOM2	P54296	1465 aa		11.23	□□□□□ -0.61
CLTCL1-208	ENST00000615606	PTPRT	O14522	1441 aa		11.23	□□□□□ -0.61
CLTCL1-208	ENST00000615606	TPM1	P09493	284 aa		11.23	□□□□□ -0.61
CLTCL1-208	ENST00000615606	NBPF14	Q5TI25	921 aa		11.23	□□□□□ -0.61
CLTCL1-208	ENST00000615606	BABAM1	Q9NWV8	329 aa		11.23	□□□□□ -0.61
CLTCL1-208	ENST00000615606	IL13	P35225	146 aa		11.23	□□□□□ -0.61
CLTCL1-208	ENST00000615606	USP5	P45974	858 aa		11.23	□□□□□ -0.61
CLTCL1-208	ENST00000615606	NYX	Q9GZU5	481 aa		11.23	□□□□□ -0.61
CLTCL1-208	ENST00000615606	SMARCA5	O60264	1052 aa	Predicted RBP	11.22	□□□□□ -0.61
CLTCL1-208	ENST00000615606	C20orf194	Q5TEA3	1177 aa		11.22	□□□□□ -0.61
CLTCL1-208	ENST00000615606	CCDC8	Q9H0W5	538 aa	Predicted RBP	11.22	□□□□□ -0.61
CLTCL1-208	ENST00000615606	ADCY10	Q96PN6	1610 aa		11.22	□□□□□ -0.61
CLTCL1-208	ENST00000615606	MET	P08581	1390 aa		11.22	□□□□□ -0.61
CLTCL1-208	ENST00000615606	ABCC3	O15438	1527 aa		11.22	□□□□□ -0.61
CLTCL1-208	ENST00000615606	DZIP3	Q86Y13	1208 aa	Known RBP	11.22	□□□□□ -0.61
CLTCL1-208	ENST00000615606	STK11IP	Q8N1F8	1099 aa		11.22	□□□□□ -0.61
CLTCL1-208	ENST00000615606	C8orf58	Q8NAV2	365 aa		11.22	□□□□□ -0.61
CLTCL1-208	ENST00000615606	ZNF622	Q969S3	477 aa	Known RBP eCLIP	11.22	□□□□□ -0.61
CLTCL1-208	ENST00000615606	CDKL5	O76039	1030 aa		11.22	□□□□□ -0.61
CLTCL1-208	ENST00000615606	NLRP3	Q96P20	1036 aa		11.22	□□□□□ -0.61
CLTCL1-208	ENST00000615606	SHROOM2	Q13796	1616 aa		11.22	□□□□□ -0.61
CLTCL1-208	ENST00000615606	PHACTR3	Q96KR7	559 aa		11.21	□□□□□ -0.61
CLTCL1-208	ENST00000615606		U3KPZ7	1027 aa	Predicted RBP	11.21	□□□□□ -0.61
CLTCL1-208	ENST00000615606	TTF1	Q15361	905 aa	Predicted RBP	11.21	□□□□□ -0.61
CLTCL1-208	ENST00000615606	NIP7	Q9Y221	180 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
CLTCL1-208	ENST00000615606	ARHGAP31	Q2M1Z3	1444 aa		11.21	□□□□□ -0.61
CLTCL1-208	ENST00000615606	TPM3	P06753	285 aa		11.21	□□□□□ -0.61
CLTCL1-208	ENST00000615606	LDHC	P07864	332 aa		11.21	□□□□□ -0.61
CLTCL1-208	ENST00000615606	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.21	□□□□□ -0.61
CLTCL1-208	ENST00000615606	SOGA3	Q5TF21	947 aa		11.21	□□□□□ -0.62
CLTCL1-208	ENST00000615606	ANKRD18A	Q8IVF6	992 aa		11.21	□□□□□ -0.62
CLTCL1-208	ENST00000615606	NUP133	Q8WUM0	1156 aa		11.21	□□□□□ -0.62
CLTCL1-208	ENST00000615606	UTP14A	Q9BVJ6	771 aa	Known RBP	11.21	□□□□□ -0.62
CLTCL1-208	ENST00000615606	ECHDC1	Q9NTX5	307 aa		11.21	□□□□□ -0.62
CLTCL1-208	ENST00000615606	POLR3D	P05423	398 aa	Predicted RBP	11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	MRPL50	Q8N5N7	158 aa	Known RBP	11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	DDX17	Q92841	729 aa	Known RBP	11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	ZNF396	Q96N95	335 aa	Predicted RBP	11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	CEP89	Q96ST8	783 aa		11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	TFCP2L1	Q9NZI6	479 aa		11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	USP21	Q9UK80	565 aa		11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	SPATA31E1	Q6ZUB1	1445 aa		11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	GRM8	O00222	908 aa		11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	LINS1	Q8NG48	757 aa		11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	JAKMIP1	Q96N16	626 aa	Known RBP	11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	PDRG1	Q9NUG6	133 aa		11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	KDM4A	O75164	1064 aa		11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	UQCRFS1P1	P0C7P4	283 aa		11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	SPTY2D1	Q68D10	685 aa	Predicted RBP	11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	TPTE2	Q6XPS3	522 aa		11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	NAPB	Q9H115	298 aa		11.2	□□□□□ -0.62
CLTCL1-208	ENST00000615606	KDM5C	P41229	1560 aa		11.19	□□□□□ -0.62
CLTCL1-208	ENST00000615606	SASS6	Q6UVJ0	657 aa		11.19	□□□□□ -0.62
CLTCL1-208	ENST00000615606	TXLNA	P40222	546 aa		11.19	□□□□□ -0.62
CLTCL1-208	ENST00000615606	EVI5L	Q96CN4	794 aa		11.19	□□□□□ -0.62
CLTCL1-208	ENST00000615606	PRDM15	P57071	1507 aa	Predicted RBP	11.18	□□□□□ -0.62
CLTCL1-208	ENST00000615606	ATP2B1	P20020	1258 aa		11.18	□□□□□ -0.62
CLTCL1-208	ENST00000615606	BACH2	Q9BYV9	841 aa		11.18	□□□□□ -0.62
CLTCL1-208	ENST00000615606	CDC42BPA	Q5VT25	1732 aa		11.18	□□□□□ -0.62
CLTCL1-208	ENST00000615606	TET3	O43151	1660 aa		11.18	□□□□□ -0.62
CLTCL1-208	ENST00000615606	POLD1	P28340	1107 aa		11.18	□□□□□ -0.62
CLTCL1-208	ENST00000615606	JMY	Q8N9B5	988 aa		11.18	□□□□□ -0.62
CLTCL1-208	ENST00000615606	HOXB7	P09629	217 aa		11.18	□□□□□ -0.62
CLTCL1-208	ENST00000615606	MKNK2	Q9HBH9	465 aa		11.18	□□□□□ -0.62
CLTCL1-208	ENST00000615606	PARP3	Q9Y6F1	533 aa		11.18	□□□□□ -0.62
CLTCL1-208	ENST00000615606	STK3	Q13188	491 aa		11.18	□□□□□ -0.62
CLTCL1-208	ENST00000615606	FAM98C	Q17RN3	349 aa	Known RBP	11.18	□□□□□ -0.62
CLTCL1-208	ENST00000615606	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
CLTCL1-208	ENST00000615606	VAMP4	O75379	141 aa		11.17	□□□□□ -0.62
CLTCL1-208	ENST00000615606	ZNF790	Q6PG37	636 aa		11.17	□□□□□ -0.62
CLTCL1-208	ENST00000615606	WASF1	Q92558	559 aa		11.17	□□□□□ -0.62
CLTCL1-208	ENST00000615606	CDK5RAP3	Q96JB5	506 aa		11.17	□□□□□ -0.62
CLTCL1-208	ENST00000615606	RNF41	Q9H4P4	317 aa	Predicted RBP	11.17	□□□□□ -0.62

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