RNA–Protein interactions for RNA: ENST00000613073.4

CNOT3-208, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-208ENST00000613073 TNS3Q68CZ2 1445 aa20.21■□□□□ 0.83
CNOT3-208ENST00000613073 HOXB7P09629 217 aa20.2■□□□□ 0.82
CNOT3-208ENST00000613073 SLC39A6Q13433 755 aa20.2■□□□□ 0.82
CNOT3-208ENST00000613073 BRINP3Q76B58 766 aa20.2■□□□□ 0.82
CNOT3-208ENST00000613073 NCOA3Q9Y6Q9 1424 aa20.2■□□□□ 0.82
CNOT3-208ENST00000613073 SPATA31A3Q5VYP0 1347 aa20.2■□□□□ 0.82
CNOT3-208ENST00000613073 CDC45O75419 566 aa20.2■□□□□ 0.82
CNOT3-208ENST00000613073 GIGYF1O75420 1035 aaPredicted RBP20.2■□□□□ 0.82
CNOT3-208ENST00000613073 TATP17735 454 aaPredicted RBP20.2■□□□□ 0.82
CNOT3-208ENST00000613073 SRCIN1Q9C0H9 1055 aa20.2■□□□□ 0.82
CNOT3-208ENST00000613073 PROSER3Q2NL68 480 aa20.19■□□□□ 0.82
CNOT3-208ENST00000613073 R3HCC1Q9Y3T6 440 aaKnown RBP20.19■□□□□ 0.82
CNOT3-208ENST00000613073 ATP8B2P98198 1209 aa20.19■□□□□ 0.82
CNOT3-208ENST00000613073 PRDM4Q9UKN5 801 aa20.19■□□□□ 0.82
CNOT3-208ENST00000613073 ZNF335Q9H4Z2 1342 aaPredicted RBP20.19■□□□□ 0.82
CNOT3-208ENST00000613073 KDM4FA0A1W2PPD8 638 aa20.18■□□□□ 0.82
CNOT3-208ENST00000613073 RBM25P49756 843 aaKnown RBP20.18■□□□□ 0.82
CNOT3-208ENST00000613073 TSHZ3Q63HK5 1081 aa20.18■□□□□ 0.82
CNOT3-208ENST00000613073 DNAAF4Q8WXU2 420 aa20.18■□□□□ 0.82
CNOT3-208ENST00000613073 CAMTA1Q9Y6Y1 1673 aa20.18■□□□□ 0.82
CNOT3-208ENST00000613073 DBF4Q9UBU7 674 aaPredicted RBP20.17■□□□□ 0.82
CNOT3-208ENST00000613073 NBPF7P0C2Y1 421 aaPredicted RBP20.17■□□□□ 0.82
CNOT3-208ENST00000613073 MSNP26038 577 aaKnown RBP20.17■□□□□ 0.82
CNOT3-208ENST00000613073 NFATC2IPQ8NCF5 419 aa20.17■□□□□ 0.82
CNOT3-208ENST00000613073 SDSP20132 328 aa20.17■□□□□ 0.82
CNOT3-208ENST00000613073 NASPP49321 788 aaPredicted RBP20.17■□□□□ 0.82
CNOT3-208ENST00000613073 MEGF6O75095 1541 aa20.16■□□□□ 0.82
CNOT3-208ENST00000613073 HSP90AB1P08238 724 aaKnown RBP20.16■□□□□ 0.82
CNOT3-208ENST00000613073 PHKG2P15735 406 aa20.16■□□□□ 0.82
CNOT3-208ENST00000613073 BEND3Q5T5X7 828 aa20.16■□□□□ 0.82
CNOT3-208ENST00000613073 ISY1Q9ULR0 285 aaKnown RBP20.16■□□□□ 0.82
CNOT3-208ENST00000613073 SPG7Q9UQ90 795 aa20.16■□□□□ 0.82
CNOT3-208ENST00000613073 ZSCAN30Q86W11 494 aa20.15■□□□□ 0.82
CNOT3-208ENST00000613073 LRRCC1Q9C099 1032 aa20.15■□□□□ 0.82
CNOT3-208ENST00000613073 XIRP1Q702N8 1843 aaKnown RBP20.15■□□□□ 0.82
CNOT3-208ENST00000613073 PXDNLA1KZ92 1463 aa20.14■□□□□ 0.82
CNOT3-208ENST00000613073 ADCY9O60503 1353 aa20.14■□□□□ 0.82
CNOT3-208ENST00000613073 CHMP4AQ9BY43 222 aa20.14■□□□□ 0.82
CNOT3-208ENST00000613073 AIMP1Q12904 312 aaKnown RBP20.14■□□□□ 0.81
CNOT3-208ENST00000613073 SLAIN2Q9P270 581 aa20.14■□□□□ 0.81
CNOT3-208ENST00000613073 PDE1AP54750 535 aa20.13■□□□□ 0.81
CNOT3-208ENST00000613073 ZNF790Q6PG37 636 aa20.13■□□□□ 0.81
CNOT3-208ENST00000613073 PPP1R42Q7Z4L9 355 aa20.13■□□□□ 0.81
CNOT3-208ENST00000613073 GBP4Q96PP9 640 aa20.13■□□□□ 0.81
CNOT3-208ENST00000613073 SLC52A2Q9HAB3 445 aa20.13■□□□□ 0.81
CNOT3-208ENST00000613073 MAP3K2Q9Y2U5 619 aa20.13■□□□□ 0.81
CNOT3-208ENST00000613073 LMTK3Q96Q04 1460 aa20.13■□□□□ 0.81
CNOT3-208ENST00000613073 KDM6AO15550 1401 aaPredicted RBP20.13■□□□□ 0.81
CNOT3-208ENST00000613073 OFD1O75665 1012 aa20.13■□□□□ 0.81
CNOT3-208ENST00000613073 PRDM10Q9NQV6 1147 aa20.13■□□□□ 0.81
CNOT3-208ENST00000613073 COL18A1P39060 1754 aa20.13■□□□□ 0.81
CNOT3-208ENST00000613073 OVOS2A0A0G2JMS6 1433 aa20.13■□□□□ 0.81
CNOT3-208ENST00000613073 CCDC173Q0VFZ6 552 aa20.12■□□□□ 0.81
CNOT3-208ENST00000613073 IFNL2Q8IZJ0 200 aa20.12■□□□□ 0.81
CNOT3-208ENST00000613073 CYP27B1O15528 508 aa20.12■□□□□ 0.81
CNOT3-208ENST00000613073 ANP32BQ92688 251 aaKnown RBP20.12■□□□□ 0.81
CNOT3-208ENST00000613073 KIF2CQ99661 725 aa20.12■□□□□ 0.81
CNOT3-208ENST00000613073 HEG1Q9ULI3 1381 aa20.12■□□□□ 0.81
CNOT3-208ENST00000613073 RBM42Q9BTD8 480 aaKnown RBP20.12■□□□□ 0.81
CNOT3-208ENST00000613073 IL1RAPL2Q9NP60 686 aa20.12■□□□□ 0.81
CNOT3-208ENST00000613073 PRDM11Q9NQV5 511 aa20.12■□□□□ 0.81
CNOT3-208ENST00000613073 SRGAP3O43295 1099 aa20.11■□□□□ 0.81
CNOT3-208ENST00000613073 STRCQ7RTU9 1775 aa20.11■□□□□ 0.81
CNOT3-208ENST00000613073 IBTKQ9P2D0 1353 aaPredicted RBP20.11■□□□□ 0.81
CNOT3-208ENST00000613073 SURF6O75683 361 aaKnown RBP20.1■□□□□ 0.81
CNOT3-208ENST00000613073 MYL6BP14649 208 aa20.1■□□□□ 0.81
CNOT3-208ENST00000613073 CWF19L2Q2TBE0 894 aaKnown RBP20.1■□□□□ 0.81
CNOT3-208ENST00000613073 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.1■□□□□ 0.81
CNOT3-208ENST00000613073 SSH3Q8TE77 659 aa20.09■□□□□ 0.81
CNOT3-208ENST00000613073 SIPA1L3O60292 1781 aaPredicted RBP20.09■□□□□ 0.81
CNOT3-208ENST00000613073 PIP4K2AP48426 406 aaPredicted RBP20.08■□□□□ 0.81
CNOT3-208ENST00000613073 KSR2Q6VAB6 950 aa20.08■□□□□ 0.81
CNOT3-208ENST00000613073 ZNF496Q96IT1 587 aaPredicted RBP20.08■□□□□ 0.81
CNOT3-208ENST00000613073 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.08■□□□□ 0.81
CNOT3-208ENST00000613073 C9orf78Q9NZ63 289 aaPredicted RBP20.08■□□□□ 0.81
CNOT3-208ENST00000613073 N4BP2Q86UW6 1770 aaPredicted RBP20.08■□□□□ 0.8
CNOT3-208ENST00000613073 NCLP19338 710 aaKnown RBP20.08■□□□□ 0.8
CNOT3-208ENST00000613073 MX1P20591 662 aa20.08■□□□□ 0.8
CNOT3-208ENST00000613073 TOM1L2Q6ZVM7 507 aa20.08■□□□□ 0.8
CNOT3-208ENST00000613073 HYPKQ9NX55 129 aa20.08■□□□□ 0.8
CNOT3-208ENST00000613073 ZHX1Q9UKY1 873 aaPredicted RBP20.08■□□□□ 0.8
CNOT3-208ENST00000613073 CRYBG1Q9Y4K1 1723 aa20.08■□□□□ 0.8
CNOT3-208ENST00000613073 DDIT3P35638 169 aa20.07■□□□□ 0.8
CNOT3-208ENST00000613073 OSBPL3Q9H4L5 887 aa20.07■□□□□ 0.8
CNOT3-208ENST00000613073 UQCRHLA0A096LP55 91 aa20.07■□□□□ 0.8
CNOT3-208ENST00000613073 CD2BP2O95400 341 aaKnown RBP20.07■□□□□ 0.8
CNOT3-208ENST00000613073 UQCRHP07919 91 aa20.07■□□□□ 0.8
CNOT3-208ENST00000613073 SSFA2P28290 1259 aa20.07■□□□□ 0.8
CNOT3-208ENST00000613073 PDIA6Q15084 440 aa20.07■□□□□ 0.8
CNOT3-208ENST00000613073 CASC1Q6TDU7 716 aa20.07■□□□□ 0.8
CNOT3-208ENST00000613073 DDX21Q9NR30 783 aaKnown RBP eCLIP20.07■□□□□ 0.8
CNOT3-208ENST00000613073 DDX49Q9Y6V7 483 aaKnown RBP20.07■□□□□ 0.8
CNOT3-208ENST00000613073 CPDO75976 1380 aa20.07■□□□□ 0.8
CNOT3-208ENST00000613073 RAB3GAP1Q15042 981 aa20.06■□□□□ 0.8
CNOT3-208ENST00000613073 NUTM1Q86Y26 1132 aa20.06■□□□□ 0.8
CNOT3-208ENST00000613073 DCAF5Q96JK2 942 aa20.06■□□□□ 0.8
CNOT3-208ENST00000613073 PPP1R9BQ96SB3 815 aa20.06■□□□□ 0.8
CNOT3-208ENST00000613073 SALL3Q9BXA9 1300 aa20.06■□□□□ 0.8
CNOT3-208ENST00000613073 TTC5Q8N0Z6 440 aa20.06■□□□□ 0.8
CNOT3-208ENST00000613073 SCN11AQ9UI33 1791 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms