RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 OVOS2Q6IE36 1432 aa16.97■□□□□ 0.31
COL6A1-207ENST00000612273 CWF19L2Q2TBE0 894 aaKnown RBP16.97■□□□□ 0.31
COL6A1-207ENST00000612273 NECAB1Q8N987 351 aa16.97■□□□□ 0.31
COL6A1-207ENST00000612273 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.97■□□□□ 0.31
COL6A1-207ENST00000612273 LARGE1O95461 756 aa16.97■□□□□ 0.31
COL6A1-207ENST00000612273 TEFQ10587 303 aa16.97■□□□□ 0.31
COL6A1-207ENST00000612273 PRPF40BQ6NWY9 871 aaKnown RBP16.97■□□□□ 0.31
COL6A1-207ENST00000612273 DIAPH3Q9NSV4 1193 aa16.97■□□□□ 0.31
COL6A1-207ENST00000612273 C9orf78Q9NZ63 289 aaPredicted RBP16.97■□□□□ 0.31
COL6A1-207ENST00000612273 PPP6R1Q9UPN7 881 aa16.97■□□□□ 0.31
COL6A1-207ENST00000612273 IGSF1Q8N6C5 1336 aa16.96■□□□□ 0.31
COL6A1-207ENST00000612273 SALL3Q9BXA9 1300 aa16.96■□□□□ 0.31
COL6A1-207ENST00000612273 MBD3O95983 291 aa16.96■□□□□ 0.31
COL6A1-207ENST00000612273 HCLS1P14317 486 aaPredicted RBP16.96■□□□□ 0.31
COL6A1-207ENST00000612273 KCNA6P17658 529 aa16.96■□□□□ 0.31
COL6A1-207ENST00000612273 FAM173BQ6P4H8 233 aa16.96■□□□□ 0.31
COL6A1-207ENST00000612273 CEP170BQ9Y4F5 1589 aaPredicted RBP16.96■□□□□ 0.31
COL6A1-207ENST00000612273 OFD1O75665 1012 aa16.96■□□□□ 0.31
COL6A1-207ENST00000612273 TSC1Q92574 1164 aa16.96■□□□□ 0.31
COL6A1-207ENST00000612273 SNX14Q9Y5W7 946 aa16.96■□□□□ 0.31
COL6A1-207ENST00000612273 SETD1BQ9UPS6 1966 aaKnown RBP16.95■□□□□ 0.3
COL6A1-207ENST00000612273 MCM2P49736 904 aa16.95■□□□□ 0.3
COL6A1-207ENST00000612273 GLIPR1L2Q4G1C9 344 aa16.95■□□□□ 0.3
COL6A1-207ENST00000612273 JAKMIP1Q96N16 626 aaKnown RBP16.95■□□□□ 0.3
COL6A1-207ENST00000612273 SMC3Q9UQE7 1217 aa16.95■□□□□ 0.3
COL6A1-207ENST00000612273 SBNO1A3KN83 1393 aa16.95■□□□□ 0.3
COL6A1-207ENST00000612273 FAM177BA6PVY3 158 aa16.95■□□□□ 0.3
COL6A1-207ENST00000612273 COL9A3Q14050 684 aaPredicted RBP16.95■□□□□ 0.3
COL6A1-207ENST00000612273 ADCK5Q3MIX3 580 aa16.95■□□□□ 0.3
COL6A1-207ENST00000612273 NBPF6Q5VWK0 638 aa16.95■□□□□ 0.3
COL6A1-207ENST00000612273 NBPF4Q96M43 638 aa16.95■□□□□ 0.3
COL6A1-207ENST00000612273 GIMAP6Q6P9H5 292 aa16.94■□□□□ 0.3
COL6A1-207ENST00000612273 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.94■□□□□ 0.3
COL6A1-207ENST00000612273 CCDC8Q9H0W5 538 aaPredicted RBP16.94■□□□□ 0.3
COL6A1-207ENST00000612273 NOL7Q9UMY1 257 aaKnown RBP16.94■□□□□ 0.3
COL6A1-207ENST00000612273 UQCRHLA0A096LP55 91 aa16.94■□□□□ 0.3
COL6A1-207ENST00000612273 UQCRHP07919 91 aa16.94■□□□□ 0.3
COL6A1-207ENST00000612273 PIP4K2AP48426 406 aaPredicted RBP16.94■□□□□ 0.3
COL6A1-207ENST00000612273 PTH1RQ03431 593 aa16.94■□□□□ 0.3
COL6A1-207ENST00000612273 CUL4AQ13619 759 aa16.94■□□□□ 0.3
COL6A1-207ENST00000612273 KLHDC4Q8TBB5 520 aa16.94■□□□□ 0.3
COL6A1-207ENST00000612273 TTC12Q9H892 705 aaPredicted RBP16.94■□□□□ 0.3
COL6A1-207ENST00000612273 RRP9O43818 475 aaKnown RBP16.94■□□□□ 0.3
COL6A1-207ENST00000612273 PROSER3Q2NL68 480 aa16.94■□□□□ 0.3
COL6A1-207ENST00000612273 DNAAF4Q8WXU2 420 aa16.94■□□□□ 0.3
COL6A1-207ENST00000612273 RIMBP3CA6NJZ7 1639 aa16.93■□□□□ 0.3
COL6A1-207ENST00000612273 RIMBP3BA6NNM3 1639 aa16.93■□□□□ 0.3
COL6A1-207ENST00000612273 RIMBP3Q9UFD9 1639 aa16.93■□□□□ 0.3
COL6A1-207ENST00000612273 SYT1P21579 422 aa16.93■□□□□ 0.3
COL6A1-207ENST00000612273 CNTROBQ8N137 903 aa16.93■□□□□ 0.3
COL6A1-207ENST00000612273 ZKSCAN5Q9Y2L8 839 aa16.93■□□□□ 0.3
COL6A1-207ENST00000612273 HSPA4P34932 840 aa16.93■□□□□ 0.3
COL6A1-207ENST00000612273 ZNF530Q6P9A1 599 aaPredicted RBP16.93■□□□□ 0.3
COL6A1-207ENST00000612273 RUFY3Q7L099 469 aa16.93■□□□□ 0.3
COL6A1-207ENST00000612273 PI4K2BQ8TCG2 481 aa16.93■□□□□ 0.3
COL6A1-207ENST00000612273 SSH3Q8TE77 659 aa16.93■□□□□ 0.3
COL6A1-207ENST00000612273 BCL11BQ9C0K0 894 aaPredicted RBP16.93■□□□□ 0.3
COL6A1-207ENST00000612273 ARHGEF10O15013 1369 aa16.93■□□□□ 0.3
COL6A1-207ENST00000612273 ADAMTS13Q76LX8 1427 aa16.93■□□□□ 0.3
COL6A1-207ENST00000612273 WDR33Q9C0J8 1336 aaKnown RBP16.93■□□□□ 0.3
COL6A1-207ENST00000612273 SGSM2O43147 1006 aa16.92■□□□□ 0.3
COL6A1-207ENST00000612273 PPFIA3O75145 1194 aa16.92■□□□□ 0.3
COL6A1-207ENST00000612273 KIF1BPQ96EK5 621 aa16.92■□□□□ 0.3
COL6A1-207ENST00000612273 BTBD11A6QL63 1104 aa16.92■□□□□ 0.3
COL6A1-207ENST00000612273 DNM1Q05193 864 aaKnown RBP16.92■□□□□ 0.3
COL6A1-207ENST00000612273 STK3Q13188 491 aa16.92■□□□□ 0.3
COL6A1-207ENST00000612273 PTPRUQ92729 1446 aa16.92■□□□□ 0.3
COL6A1-207ENST00000612273 IFIT2P09913 472 aaKnown RBP16.92■□□□□ 0.3
COL6A1-207ENST00000612273 SYAP1Q96A49 352 aaPredicted RBP16.92■□□□□ 0.3
COL6A1-207ENST00000612273 SIRT1Q96EB6 747 aa16.92■□□□□ 0.3
COL6A1-207ENST00000612273 NDUFB9Q9Y6M9 179 aa16.92■□□□□ 0.3
COL6A1-207ENST00000612273 MAP3K5Q99683 1374 aa16.91■□□□□ 0.3
COL6A1-207ENST00000612273 AACSQ86V21 672 aa16.91■□□□□ 0.3
COL6A1-207ENST00000612273 PDLIM2Q96JY6 352 aa16.91■□□□□ 0.3
COL6A1-207ENST00000612273 STAP2Q9UGK3 403 aa16.91■□□□□ 0.3
COL6A1-207ENST00000612273 STX6O43752 255 aa16.91■□□□□ 0.3
COL6A1-207ENST00000612273 CLASRPQ8N2M8 674 aaKnown RBP16.91■□□□□ 0.3
COL6A1-207ENST00000612273 SPC24Q8NBT2 197 aa16.91■□□□□ 0.3
COL6A1-207ENST00000612273 MAP3K2Q9Y2U5 619 aa16.91■□□□□ 0.3
COL6A1-207ENST00000612273 TPM2P07951 284 aa16.9■□□□□ 0.3
COL6A1-207ENST00000612273 CAMK4Q16566 473 aa16.9■□□□□ 0.3
COL6A1-207ENST00000612273 ESCO1Q5FWF5 840 aa16.9■□□□□ 0.3
COL6A1-207ENST00000612273 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.9■□□□□ 0.3
COL6A1-207ENST00000612273 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.9■□□□□ 0.3
COL6A1-207ENST00000612273 FOSBP53539 338 aa16.9■□□□□ 0.3
COL6A1-207ENST00000612273 ANAPC15P60006 121 aa16.9■□□□□ 0.3
COL6A1-207ENST00000612273 FAM227BQ96M60 508 aa16.9■□□□□ 0.3
COL6A1-207ENST00000612273 BOLA2Q9H3K6 86 aa16.9■□□□□ 0.3
COL6A1-207ENST00000612273 TAOK2Q9UL54 1235 aa16.9■□□□□ 0.3
COL6A1-207ENST00000612273 TTC21AQ8NDW8 1320 aa16.9■□□□□ 0.3
COL6A1-207ENST00000612273 GJB2P29033 226 aa16.9■□□□□ 0.3
COL6A1-207ENST00000612273 EDC3Q96F86 508 aaKnown RBP16.9■□□□□ 0.3
COL6A1-207ENST00000612273 CCDC39Q9UFE4 941 aa16.9■□□□□ 0.3
COL6A1-207ENST00000612273 PEAK1Q9H792 1746 aa16.89■□□□□ 0.3
COL6A1-207ENST00000612273 NRXN3Q9Y4C0 1643 aa16.89■□□□□ 0.29
COL6A1-207ENST00000612273 USP31Q70CQ4 1352 aa16.89■□□□□ 0.29
COL6A1-207ENST00000612273 MYL6BP14649 208 aa16.89■□□□□ 0.29
COL6A1-207ENST00000612273 EIF4A1P60842 406 aaKnown RBP16.89■□□□□ 0.29
COL6A1-207ENST00000612273 PSME1Q06323 249 aa16.89■□□□□ 0.29
COL6A1-207ENST00000612273 INTS4Q96HW7 963 aaKnown RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms