RNA–Protein interactions for RNA: ENST00000602783.1

PPFIA3-209, Transcript of PTPRF interacting protein alpha 3, humanhuman

TSL 1 (best)

Gene PPFIA3, Length 980 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA3-209ENST00000602783 CFAP53Q96M91 514 aa28.46■■■□□ 2.15
PPFIA3-209ENST00000602783 POLRMTO00411 1230 aaKnown RBP28.45■■■□□ 2.14
PPFIA3-209ENST00000602783 PIM2Q9P1W9 311 aa28.44■■■□□ 2.14
PPFIA3-209ENST00000602783 NARFQ9UHQ1 456 aa28.44■■■□□ 2.14
PPFIA3-209ENST00000602783 COL15A1P39059 1388 aa28.43■■■□□ 2.14
PPFIA3-209ENST00000602783 CANXP27824 592 aaKnown RBP28.43■■■□□ 2.14
PPFIA3-209ENST00000602783 PHACTR3Q96KR7 559 aa28.42■■■□□ 2.14
PPFIA3-209ENST00000602783 STARD3NLO95772 234 aa28.41■■■□□ 2.14
PPFIA3-209ENST00000602783 PRKAR2BP31323 418 aa28.41■■■□□ 2.14
PPFIA3-209ENST00000602783 ZNF496Q96IT1 587 aaPredicted RBP28.41■■■□□ 2.14
PPFIA3-209ENST00000602783 CHRNA5P30532 468 aa28.4■■■□□ 2.14
PPFIA3-209ENST00000602783 NFIXQ14938 502 aa28.4■■■□□ 2.14
PPFIA3-209ENST00000602783 ZNF790Q6PG37 636 aa28.4■■■□□ 2.14
PPFIA3-209ENST00000602783 NUDCQ9Y266 331 aa28.4■■■□□ 2.14
PPFIA3-209ENST00000602783 DALRD3Q5D0E6 543 aaKnown RBP28.39■■■□□ 2.14
PPFIA3-209ENST00000602783 RSPH6AQ9H0K4 717 aa28.39■■■□□ 2.14
PPFIA3-209ENST00000602783 PPP2R1AP30153 589 aa28.38■■■□□ 2.13
PPFIA3-209ENST00000602783 BCL2L12Q9HB09 334 aa28.38■■■□□ 2.13
PPFIA3-209ENST00000602783 BRCA1P38398 1863 aaKnown RBP28.38■■■□□ 2.13
PPFIA3-209ENST00000602783 UBR2Q8IWV8 1755 aa28.37■■■□□ 2.13
PPFIA3-209ENST00000602783 SIPA1L3O60292 1781 aaPredicted RBP28.37■■■□□ 2.13
PPFIA3-209ENST00000602783 HEG1Q9ULI3 1381 aa28.37■■■□□ 2.13
PPFIA3-209ENST00000602783 TEX13AQ9BXU3 409 aaPredicted RBP28.36■■■□□ 2.13
PPFIA3-209ENST00000602783 SERPINB2P05120 415 aa28.35■■■□□ 2.13
PPFIA3-209ENST00000602783 U2AF1L5P0DN76 240 aaPredicted RBP28.35■■■□□ 2.13
PPFIA3-209ENST00000602783 EIF5P55010 431 aaKnown RBP28.35■■■□□ 2.13
PPFIA3-209ENST00000602783 U2AF1Q01081 240 aaKnown RBP eCLIP28.35■■■□□ 2.13
PPFIA3-209ENST00000602783 A0A087WZG4 1122 aa28.34■■■□□ 2.13
PPFIA3-209ENST00000602783 CEMIPQ8WUJ3 1361 aa28.34■■■□□ 2.13
PPFIA3-209ENST00000602783 KIF3CO14782 793 aa28.33■■■□□ 2.13
PPFIA3-209ENST00000602783 FMNL2Q96PY5 1086 aa28.33■■■□□ 2.13
PPFIA3-209ENST00000602783 BTBD11A6QL63 1104 aa28.32■■■□□ 2.12
PPFIA3-209ENST00000602783 C9orf131Q5VYM1 1079 aa28.32■■■□□ 2.12
PPFIA3-209ENST00000602783 BICDL1Q6ZP65 573 aa28.32■■■□□ 2.12
PPFIA3-209ENST00000602783 ZNF330Q9Y3S2 320 aaPredicted RBP28.32■■■□□ 2.12
PPFIA3-209ENST00000602783 KCNQ3O43525 872 aa28.31■■■□□ 2.12
PPFIA3-209ENST00000602783 ARFGEF1Q9Y6D6 1849 aa28.31■■■□□ 2.12
PPFIA3-209ENST00000602783 RTF1Q92541 710 aaKnown RBP28.29■■■□□ 2.12
PPFIA3-209ENST00000602783 TBC1D2BQ9UPU7 963 aa28.29■■■□□ 2.12
PPFIA3-209ENST00000602783 AFDNP55196 1824 aaKnown RBP28.29■■■□□ 2.12
PPFIA3-209ENST00000602783 A1BGP04217 495 aa28.28■■■□□ 2.12
PPFIA3-209ENST00000602783 IL6STP40189 918 aaPredicted RBP28.28■■■□□ 2.12
PPFIA3-209ENST00000602783 CEP350Q5VT06 3117 aa28.27■■■□□ 2.12
PPFIA3-209ENST00000602783 HSPA6P17066 643 aa28.27■■■□□ 2.12
PPFIA3-209ENST00000602783 MCM10Q7L590 875 aa28.27■■■□□ 2.12
PPFIA3-209ENST00000602783 TBC1D9BQ66K14 1250 aa28.26■■■□□ 2.11
PPFIA3-209ENST00000602783 NPM2Q86SE8 214 aaKnown RBP28.26■■■□□ 2.11
PPFIA3-209ENST00000602783 NRXN2Q9P2S2 1712 aa28.25■■■□□ 2.11
PPFIA3-209ENST00000602783 C2CD5Q86YS7 1000 aa28.24■■■□□ 2.11
PPFIA3-209ENST00000602783 NMRK2Q9NPI5 230 aa28.24■■■□□ 2.11
PPFIA3-209ENST00000602783 RNF181Q9P0P0 153 aa28.24■■■□□ 2.11
PPFIA3-209ENST00000602783 USP16Q9Y5T5 823 aa28.24■■■□□ 2.11
PPFIA3-209ENST00000602783 DCTN1Q14203 1278 aa28.23■■■□□ 2.11
PPFIA3-209ENST00000602783 H0YIN7 160 aa28.22■■■□□ 2.11
PPFIA3-209ENST00000602783 TTLL6Q8N841 843 aa28.22■■■□□ 2.11
PPFIA3-209ENST00000602783 CARMIL3Q8ND23 1372 aa28.22■■■□□ 2.11
PPFIA3-209ENST00000602783 PRAMEF22A3QJZ6 481 aa28.2■■■□□ 2.1
PPFIA3-209ENST00000602783 HTATSF1O43719 755 aaKnown RBP28.2■■■□□ 2.1
PPFIA3-209ENST00000602783 TOMM70O94826 608 aa28.2■■■□□ 2.1
PPFIA3-209ENST00000602783 CAMTA2O94983 1202 aa28.19■■■□□ 2.1
PPFIA3-209ENST00000602783 SNRPA1P09661 255 aaKnown RBP28.19■■■□□ 2.1
PPFIA3-209ENST00000602783 PIP4K2AP48426 406 aaPredicted RBP28.19■■■□□ 2.1
PPFIA3-209ENST00000602783 RASSF7Q02833 373 aa28.18■■■□□ 2.1
PPFIA3-209ENST00000602783 DZIP3Q86Y13 1208 aaKnown RBP28.18■■■□□ 2.1
PPFIA3-209ENST00000602783 CCDC24Q8N4L8 307 aa28.18■■■□□ 2.1
PPFIA3-209ENST00000602783 DLG5Q8TDM6 1919 aa28.18■■■□□ 2.1
PPFIA3-209ENST00000602783 PRR5LQ6MZQ0 368 aa28.17■■■□□ 2.1
PPFIA3-209ENST00000602783 SETDB2Q96T68 719 aa28.17■■■□□ 2.1
PPFIA3-209ENST00000602783 BRIP1Q9BX63 1249 aa28.17■■■□□ 2.1
PPFIA3-209ENST00000602783 KDM2BQ8NHM5 1336 aa28.16■■■□□ 2.1
PPFIA3-209ENST00000602783 SBF1O95248 1867 aa28.15■■■□□ 2.1
PPFIA3-209ENST00000602783 NEFMP07197 916 aa28.15■■■□□ 2.1
PPFIA3-209ENST00000602783 PDE6BP35913 854 aa28.15■■■□□ 2.1
PPFIA3-209ENST00000602783 TAF7Q15545 349 aaPredicted RBP28.15■■■□□ 2.1
PPFIA3-209ENST00000602783 ZNF622Q969S3 477 aaKnown RBP eCLIP28.15■■■□□ 2.1
PPFIA3-209ENST00000602783 SCN7AQ01118 1682 aa28.14■■■□□ 2.1
PPFIA3-209ENST00000602783 NPHP1O15259 732 aa28.14■■■□□ 2.1
PPFIA3-209ENST00000602783 PDZRN3Q9UPQ7 1066 aa28.14■■■□□ 2.1
PPFIA3-209ENST00000602783 C16orf71Q8IYS4 520 aaPredicted RBP28.13■■■□□ 2.09
PPFIA3-209ENST00000602783 MIS18AQ9NYP9 233 aa28.13■■■□□ 2.09
PPFIA3-209ENST00000602783 DLEC1Q9Y238 1755 aa28.12■■■□□ 2.09
PPFIA3-209ENST00000602783 LMNB1P20700 586 aa28.12■■■□□ 2.09
PPFIA3-209ENST00000602783 CNBD1Q8NA66 436 aa28.12■■■□□ 2.09
PPFIA3-209ENST00000602783 RRAGCQ9HB90 399 aa28.12■■■□□ 2.09
PPFIA3-209ENST00000602783 PRELPP51888 382 aa28.1■■■□□ 2.09
PPFIA3-209ENST00000602783 ZNF219Q9P2Y4 722 aaPredicted RBP28.1■■■□□ 2.09
PPFIA3-209ENST00000602783 ANKRD31Q8N7Z5 1873 aa28.09■■■□□ 2.09
PPFIA3-209ENST00000602783 NBPF26B4DH59 902 aa28.09■■■□□ 2.09
PPFIA3-209ENST00000602783 ST5P78524 1137 aa28.09■■■□□ 2.09
PPFIA3-209ENST00000602783 NBPF10Q6P3W6 841 aaKnown RBP28.09■■■□□ 2.09
PPFIA3-209ENST00000602783 CLEC4GQ6UXB4 293 aa28.09■■■□□ 2.09
PPFIA3-209ENST00000602783 NBPF15Q8N660 670 aa28.09■■■□□ 2.09
PPFIA3-209ENST00000602783 RBM46Q8TBY0 533 aaKnown RBP28.09■■■□□ 2.09
PPFIA3-209ENST00000602783 APLP1P51693 650 aa28.08■■■□□ 2.09
PPFIA3-209ENST00000602783 PLEKHF1Q96S99 279 aa28.08■■■□□ 2.09
PPFIA3-209ENST00000602783 NFKBIEO00221 500 aa28.07■■■□□ 2.08
PPFIA3-209ENST00000602783 C21orf2O43822 256 aa28.07■■■□□ 2.08
PPFIA3-209ENST00000602783 DDX10Q13206 875 aaKnown RBP28.07■■■□□ 2.08
PPFIA3-209ENST00000602783 ZNF652Q9Y2D9 606 aa28.07■■■□□ 2.08
PPFIA3-209ENST00000602783 ZC3H4Q9UPT8 1303 aaKnown RBP28.07■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms