RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 ABHD8Q96I13 439 aa7.04□□□□□ -1.28
VRK3-226ENST00000602029 ZNF219Q9P2Y4 722 aaPredicted RBP7.04□□□□□ -1.28
VRK3-226ENST00000602029 HMOX1P09601 288 aa7.03□□□□□ -1.28
VRK3-226ENST00000602029 RASSF7Q02833 373 aa7.03□□□□□ -1.28
VRK3-226ENST00000602029 USPL1Q5W0Q7 1092 aa7.03□□□□□ -1.28
VRK3-226ENST00000602029 DNAJC10Q8IXB1 793 aa7.03□□□□□ -1.28
VRK3-226ENST00000602029 TTC5Q8N0Z6 440 aa7.03□□□□□ -1.28
VRK3-226ENST00000602029 SMC1BQ8NDV3 1235 aa7.03□□□□□ -1.28
VRK3-226ENST00000602029 SLC4A9Q96Q91 983 aa7.03□□□□□ -1.28
VRK3-226ENST00000602029 KDRP35968 1356 aa7.03□□□□□ -1.28
VRK3-226ENST00000602029 MAP2P11137 1827 aaKnown RBP7.03□□□□□ -1.28
VRK3-226ENST00000602029 USP42Q9H9J4 1324 aaKnown RBP7.02□□□□□ -1.28
VRK3-226ENST00000602029 TIAM2Q8IVF5 1701 aa7.02□□□□□ -1.29
VRK3-226ENST00000602029 HSPA5P11021 654 aaKnown RBP7.02□□□□□ -1.29
VRK3-226ENST00000602029 CANXP27824 592 aaKnown RBP7.02□□□□□ -1.29
VRK3-226ENST00000602029 RGS19P49795 217 aa7.02□□□□□ -1.29
VRK3-226ENST00000602029 MLLT1Q03111 559 aaPredicted RBP7.02□□□□□ -1.29
VRK3-226ENST00000602029 DDR1Q08345 913 aa7.02□□□□□ -1.29
VRK3-226ENST00000602029 SLC39A6Q13433 755 aa7.02□□□□□ -1.29
VRK3-226ENST00000602029 C2CD5Q86YS7 1000 aa7.02□□□□□ -1.29
VRK3-226ENST00000602029 ZNF622Q969S3 477 aaKnown RBP eCLIP7.02□□□□□ -1.29
VRK3-226ENST00000602029 PRDM10Q9NQV6 1147 aa7.02□□□□□ -1.29
VRK3-226ENST00000602029 MKRN1Q9UHC7 482 aaKnown RBP7.02□□□□□ -1.29
VRK3-226ENST00000602029 KDM6AO15550 1401 aaPredicted RBP7.01□□□□□ -1.29
VRK3-226ENST00000602029 C4AP0C0L4 1744 aa7.01□□□□□ -1.29
VRK3-226ENST00000602029 CASP8AP2Q9UKL3 1982 aa7.01□□□□□ -1.29
VRK3-226ENST00000602029 H0YIN7 160 aa7.01□□□□□ -1.29
VRK3-226ENST00000602029 DPY19L2Q6NUT2 758 aa7.01□□□□□ -1.29
VRK3-226ENST00000602029 NCAPD2Q15021 1401 aa7.01□□□□□ -1.29
VRK3-226ENST00000602029 COL15A1P39059 1388 aa7□□□□□ -1.29
VRK3-226ENST00000602029 POLRMTO00411 1230 aaKnown RBP7□□□□□ -1.29
VRK3-226ENST00000602029 U2SURPO15042 1029 aaKnown RBP7□□□□□ -1.29
VRK3-226ENST00000602029 SERPINB2P05120 415 aa7□□□□□ -1.29
VRK3-226ENST00000602029 LMNB1P20700 586 aa7□□□□□ -1.29
VRK3-226ENST00000602029 LBX1P52954 281 aa7□□□□□ -1.29
VRK3-226ENST00000602029 TEFQ10587 303 aa7□□□□□ -1.29
VRK3-226ENST00000602029 AKAP4Q5JQC9 854 aa7□□□□□ -1.29
VRK3-226ENST00000602029 TTLL6Q8N841 843 aa7□□□□□ -1.29
VRK3-226ENST00000602029 SLC52A2Q9HAB3 445 aa7□□□□□ -1.29
VRK3-226ENST00000602029 ANKRD26Q9UPS8 1709 aa6.99□□□□□ -1.29
VRK3-226ENST00000602029 A0A087WZG4 1122 aa6.99□□□□□ -1.29
VRK3-226ENST00000602029 RNMTO43148 476 aaKnown RBP6.99□□□□□ -1.29
VRK3-226ENST00000602029 STARD3NLO95772 234 aa6.99□□□□□ -1.29
VRK3-226ENST00000602029 VEGFAP15692 232 aaPredicted RBP6.99□□□□□ -1.29
VRK3-226ENST00000602029 KCNA3P22001 575 aa6.99□□□□□ -1.29
VRK3-226ENST00000602029 MAPK8IP2Q13387 824 aaPredicted RBP6.99□□□□□ -1.29
VRK3-226ENST00000602029 NFIXQ14938 502 aa6.99□□□□□ -1.29
VRK3-226ENST00000602029 CC2D1BQ5T0F9 858 aaKnown RBP6.99□□□□□ -1.29
VRK3-226ENST00000602029 CCDC24Q8N4L8 307 aa6.99□□□□□ -1.29
VRK3-226ENST00000602029 LGR6Q9HBX8 967 aa6.99□□□□□ -1.29
VRK3-226ENST00000602029 ZBTB1Q9Y2K1 713 aa6.99□□□□□ -1.29
VRK3-226ENST00000602029 DICER1Q9UPY3 1922 aaKnown RBP6.99□□□□□ -1.29
VRK3-226ENST00000602029 SOS1Q07889 1333 aaPredicted RBP6.99□□□□□ -1.29
VRK3-226ENST00000602029 CCDC85CA6NKD9 419 aa6.98□□□□□ -1.29
VRK3-226ENST00000602029 C21orf2O43822 256 aa6.98□□□□□ -1.29
VRK3-226ENST00000602029 DIAPH1O60610 1272 aaKnown RBP6.98□□□□□ -1.29
VRK3-226ENST00000602029 ERFEQ4G0M1 354 aa6.98□□□□□ -1.29
VRK3-226ENST00000602029 INTS5Q6P9B9 1019 aaKnown RBP6.98□□□□□ -1.29
VRK3-226ENST00000602029 NARFQ9UHQ1 456 aa6.98□□□□□ -1.29
VRK3-226ENST00000602029 TIMELESSQ9UNS1 1208 aa6.98□□□□□ -1.29
VRK3-226ENST00000602029 GLTPD2A6NH11 291 aa6.97□□□□□ -1.29
VRK3-226ENST00000602029 HSPA8P11142 646 aaKnown RBP6.97□□□□□ -1.29
VRK3-226ENST00000602029 CYP19A1P11511 503 aaPredicted RBP6.97□□□□□ -1.29
VRK3-226ENST00000602029 IL13P35225 146 aa6.97□□□□□ -1.29
VRK3-226ENST00000602029 PDE6BP35913 854 aa6.97□□□□□ -1.29
VRK3-226ENST00000602029 CTCFP49711 727 aaPredicted RBP6.97□□□□□ -1.29
VRK3-226ENST00000602029 ST5P78524 1137 aa6.97□□□□□ -1.29
VRK3-226ENST00000602029 CNBD1Q8NA66 436 aa6.97□□□□□ -1.29
VRK3-226ENST00000602029 AIDAQ96BJ3 306 aa6.97□□□□□ -1.29
VRK3-226ENST00000602029 TBC1D2BQ9UPU7 963 aa6.97□□□□□ -1.29
VRK3-226ENST00000602029 CLEC11AQ9Y240 323 aa6.97□□□□□ -1.29
VRK3-226ENST00000602029 FAM177BA6PVY3 158 aa6.96□□□□□ -1.3
VRK3-226ENST00000602029 POTECB2RU33 542 aa6.96□□□□□ -1.3
VRK3-226ENST00000602029 GTF2E1P29083 439 aaPredicted RBP6.96□□□□□ -1.3
VRK3-226ENST00000602029 TM4SF1P30408 202 aa6.96□□□□□ -1.3
VRK3-226ENST00000602029 MTHFSDQ2M296 383 aaKnown RBP6.96□□□□□ -1.3
VRK3-226ENST00000602029 EAPPQ56P03 285 aaPredicted RBP6.96□□□□□ -1.3
VRK3-226ENST00000602029 PPP4R3CPQ6ZMV5 832 aa6.96□□□□□ -1.3
VRK3-226ENST00000602029 PAXIP1Q6ZW49 1069 aaPredicted RBP6.96□□□□□ -1.3
VRK3-226ENST00000602029 SETDB2Q96T68 719 aa6.96□□□□□ -1.3
VRK3-226ENST00000602029 TAOK3Q9H2K8 898 aa6.96□□□□□ -1.3
VRK3-226ENST00000602029 MYH14Q7Z406 1995 aaKnown RBP6.96□□□□□ -1.3
VRK3-226ENST00000602029 ZC3H4Q9UPT8 1303 aaKnown RBP6.96□□□□□ -1.3
VRK3-226ENST00000602029 CNTNAP1P78357 1384 aa6.95□□□□□ -1.3
VRK3-226ENST00000602029 TBC1D9BQ66K14 1250 aa6.95□□□□□ -1.3
VRK3-226ENST00000602029 NBPF5PQ86XG9 351 aaPredicted RBP6.95□□□□□ -1.3
VRK3-226ENST00000602029 WBP1LQ9NX94 342 aa6.95□□□□□ -1.3
VRK3-226ENST00000602029 COL5A3P25940 1745 aaPredicted RBP6.95□□□□□ -1.3
VRK3-226ENST00000602029 CARMIL3Q8ND23 1372 aa6.95□□□□□ -1.3
VRK3-226ENST00000602029 GNAT3A8MTJ3 354 aa6.94□□□□□ -1.3
VRK3-226ENST00000602029 POTEIP0CG38 1075 aa6.94□□□□□ -1.3
VRK3-226ENST00000602029 POTEJP0CG39 1038 aa6.94□□□□□ -1.3
VRK3-226ENST00000602029 PIP4K2AP48426 406 aaPredicted RBP6.94□□□□□ -1.3
VRK3-226ENST00000602029 VEGFBP49765 207 aa6.94□□□□□ -1.3
VRK3-226ENST00000602029 GRM1Q13255 1194 aa6.94□□□□□ -1.3
VRK3-226ENST00000602029 DZIP3Q86Y13 1208 aaKnown RBP6.94□□□□□ -1.3
VRK3-226ENST00000602029 GAS2L2Q8NHY3 880 aa6.94□□□□□ -1.3
VRK3-226ENST00000602029 RTF1Q92541 710 aaKnown RBP6.94□□□□□ -1.3
VRK3-226ENST00000602029 CNKSR1Q969H4 720 aa6.94□□□□□ -1.3
VRK3-226ENST00000602029 CFAP53Q96M91 514 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms