RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 H0YIN7 160 aa12.9□□□□□ -0.34
VRK3-224ENST00000601849 CHRNA5P30532 468 aa12.9□□□□□ -0.34
VRK3-224ENST00000601849 MTHFSDQ2M296 383 aaKnown RBP12.9□□□□□ -0.34
VRK3-224ENST00000601849 CC2D1BQ5T0F9 858 aaKnown RBP12.9□□□□□ -0.34
VRK3-224ENST00000601849 NMRK2Q9NPI5 230 aa12.9□□□□□ -0.34
VRK3-224ENST00000601849 PDZRN3Q9UPQ7 1066 aa12.9□□□□□ -0.34
VRK3-224ENST00000601849 U2SURPO15042 1029 aaKnown RBP12.89□□□□□ -0.35
VRK3-224ENST00000601849 SERPINB2P05120 415 aa12.89□□□□□ -0.35
VRK3-224ENST00000601849 CANXP27824 592 aaKnown RBP12.89□□□□□ -0.35
VRK3-224ENST00000601849 TTLL6Q8N841 843 aa12.89□□□□□ -0.35
VRK3-224ENST00000601849 GAS2L2Q8NHY3 880 aa12.89□□□□□ -0.35
VRK3-224ENST00000601849 ZC3H4Q9UPT8 1303 aaKnown RBP12.88□□□□□ -0.35
VRK3-224ENST00000601849 GNAT3A8MTJ3 354 aa12.88□□□□□ -0.35
VRK3-224ENST00000601849 NPHP1O15259 732 aa12.88□□□□□ -0.35
VRK3-224ENST00000601849 NFIXQ14938 502 aa12.88□□□□□ -0.35
VRK3-224ENST00000601849 RRAGCQ9HB90 399 aa12.88□□□□□ -0.35
VRK3-224ENST00000601849 COL15A1P39059 1388 aa12.88□□□□□ -0.35
VRK3-224ENST00000601849 KIF7Q2M1P5 1343 aa12.88□□□□□ -0.35
VRK3-224ENST00000601849 MYH14Q7Z406 1995 aaKnown RBP12.87□□□□□ -0.35
VRK3-224ENST00000601849 LMNB1P20700 586 aa12.87□□□□□ -0.35
VRK3-224ENST00000601849 C2CD5Q86YS7 1000 aa12.87□□□□□ -0.35
VRK3-224ENST00000601849 CFAP53Q96M91 514 aa12.87□□□□□ -0.35
VRK3-224ENST00000601849 ZBTB1Q9Y2K1 713 aa12.87□□□□□ -0.35
VRK3-224ENST00000601849 SCN11AQ9UI33 1791 aa12.86□□□□□ -0.35
VRK3-224ENST00000601849 PDE6BP35913 854 aa12.86□□□□□ -0.35
VRK3-224ENST00000601849 CNGB1Q14028 1251 aaPredicted RBP12.86□□□□□ -0.35
VRK3-224ENST00000601849 DPY19L2Q6NUT2 758 aa12.86□□□□□ -0.35
VRK3-224ENST00000601849 SMC1BQ8NDV3 1235 aa12.86□□□□□ -0.35
VRK3-224ENST00000601849 KIAA1551Q9HCM1 1747 aa12.85□□□□□ -0.35
VRK3-224ENST00000601849 PER1O15534 1290 aaPredicted RBP12.85□□□□□ -0.35
VRK3-224ENST00000601849 VEGFAP15692 232 aaPredicted RBP12.85□□□□□ -0.35
VRK3-224ENST00000601849 ZNF790Q6PG37 636 aa12.85□□□□□ -0.35
VRK3-224ENST00000601849 BICDL1Q6ZP65 573 aa12.85□□□□□ -0.35
VRK3-224ENST00000601849 DNAJC5GQ8N7S2 189 aa12.85□□□□□ -0.35
VRK3-224ENST00000601849 ZNF622Q969S3 477 aaKnown RBP eCLIP12.85□□□□□ -0.35
VRK3-224ENST00000601849 FMNL2Q96PY5 1086 aa12.85□□□□□ -0.35
VRK3-224ENST00000601849 NUDCQ9Y266 331 aa12.85□□□□□ -0.35
VRK3-224ENST00000601849 ZNF330Q9Y3S2 320 aaPredicted RBP12.85□□□□□ -0.35
VRK3-224ENST00000601849 ARFGEF1Q9Y6D6 1849 aa12.85□□□□□ -0.35
VRK3-224ENST00000601849 GLTPD2A6NH11 291 aa12.84□□□□□ -0.35
VRK3-224ENST00000601849 EIF5P55010 431 aaKnown RBP12.84□□□□□ -0.35
VRK3-224ENST00000601849 SETDB2Q96T68 719 aa12.84□□□□□ -0.35
VRK3-224ENST00000601849 BRIP1Q9BX63 1249 aa12.84□□□□□ -0.35
VRK3-224ENST00000601849 TJP1Q07157 1748 aa12.84□□□□□ -0.35
VRK3-224ENST00000601849 KCPQ6ZWJ8 1503 aa12.83□□□□□ -0.35
VRK3-224ENST00000601849 IL6STP40189 918 aaPredicted RBP12.83□□□□□ -0.36
VRK3-224ENST00000601849 RTF1Q92541 710 aaKnown RBP12.83□□□□□ -0.36
VRK3-224ENST00000601849 BRCA1P38398 1863 aaKnown RBP12.82□□□□□ -0.36
VRK3-224ENST00000601849 BTBD11A6QL63 1104 aa12.82□□□□□ -0.36
VRK3-224ENST00000601849 ST5P78524 1137 aa12.82□□□□□ -0.36
VRK3-224ENST00000601849 IL17REQ8NFR9 667 aa12.82□□□□□ -0.36
VRK3-224ENST00000601849 KLRG1Q96E93 195 aa12.82□□□□□ -0.36
VRK3-224ENST00000601849 BCL2L12Q9HB09 334 aa12.82□□□□□ -0.36
VRK3-224ENST00000601849 MRC1P22897 1456 aa12.82□□□□□ -0.36
VRK3-224ENST00000601849 NPC1L1Q9UHC9 1359 aa12.81□□□□□ -0.36
VRK3-224ENST00000601849 HEG1Q9ULI3 1381 aa12.81□□□□□ -0.36
VRK3-224ENST00000601849 RASSF7Q02833 373 aa12.81□□□□□ -0.36
VRK3-224ENST00000601849 SOGA3Q5TF21 947 aa12.81□□□□□ -0.36
VRK3-224ENST00000601849 ZNF496Q96IT1 587 aaPredicted RBP12.81□□□□□ -0.36
VRK3-224ENST00000601849 TBC1D2BQ9UPU7 963 aa12.81□□□□□ -0.36
VRK3-224ENST00000601849 CARMIL3Q8ND23 1372 aa12.81□□□□□ -0.36
VRK3-224ENST00000601849 NEFMP07197 916 aa12.8□□□□□ -0.36
VRK3-224ENST00000601849 TBC1D9BQ66K14 1250 aa12.8□□□□□ -0.36
VRK3-224ENST00000601849 CNKSR1Q969H4 720 aa12.8□□□□□ -0.36
VRK3-224ENST00000601849 ZNF652Q9Y2D9 606 aa12.8□□□□□ -0.36
VRK3-224ENST00000601849 C21orf2O43822 256 aa12.79□□□□□ -0.36
VRK3-224ENST00000601849 ERFEQ4G0M1 354 aa12.79□□□□□ -0.36
VRK3-224ENST00000601849 CNBD1Q8NA66 436 aa12.79□□□□□ -0.36
VRK3-224ENST00000601849 A1BGP04217 495 aa12.78□□□□□ -0.36
VRK3-224ENST00000601849 PRKAR2BP31323 418 aa12.78□□□□□ -0.36
VRK3-224ENST00000601849 PRR5LQ6MZQ0 368 aa12.78□□□□□ -0.36
VRK3-224ENST00000601849 CLEC4GQ6UXB4 293 aa12.78□□□□□ -0.36
VRK3-224ENST00000601849 DZIP3Q86Y13 1208 aaKnown RBP12.78□□□□□ -0.36
VRK3-224ENST00000601849 JMYQ8N9B5 988 aa12.78□□□□□ -0.36
VRK3-224ENST00000601849 ZNF219Q9P2Y4 722 aaPredicted RBP12.78□□□□□ -0.36
VRK3-224ENST00000601849 TNRC6CQ9HCJ0 1690 aaKnown RBP12.77□□□□□ -0.36
VRK3-224ENST00000601849 SNRPA1P09661 255 aaKnown RBP12.77□□□□□ -0.37
VRK3-224ENST00000601849 U2AF1L5P0DN76 240 aaPredicted RBP12.77□□□□□ -0.37
VRK3-224ENST00000601849 U2AF1Q01081 240 aaKnown RBP eCLIP12.77□□□□□ -0.37
VRK3-224ENST00000601849 STYK1Q6J9G0 422 aa12.77□□□□□ -0.37
VRK3-224ENST00000601849 TPTE2Q6XPS3 522 aa12.77□□□□□ -0.37
VRK3-224ENST00000601849 MASTLQ96GX5 879 aa12.77□□□□□ -0.37
VRK3-224ENST00000601849 ADAMTS7Q9UKP4 1686 aa12.77□□□□□ -0.37
VRK3-224ENST00000601849 NFKBIEO00221 500 aa12.76□□□□□ -0.37
VRK3-224ENST00000601849 HTRA3P83110 453 aa12.76□□□□□ -0.37
VRK3-224ENST00000601849 NBPF5PQ86XG9 351 aaPredicted RBP12.76□□□□□ -0.37
VRK3-224ENST00000601849 TAOK3Q9H2K8 898 aa12.76□□□□□ -0.37
VRK3-224ENST00000601849 AFDNP55196 1824 aaKnown RBP12.76□□□□□ -0.37
VRK3-224ENST00000601849 HTATSF1O43719 755 aaKnown RBP12.75□□□□□ -0.37
VRK3-224ENST00000601849 SBF1O95248 1867 aa12.75□□□□□ -0.37
VRK3-224ENST00000601849 GTF2E1P29083 439 aaPredicted RBP12.75□□□□□ -0.37
VRK3-224ENST00000601849 WDR90Q96KV7 1748 aa12.75□□□□□ -0.37
VRK3-224ENST00000601849 NRXN2Q9P2S2 1712 aa12.75□□□□□ -0.37
VRK3-224ENST00000601849 PCNTO95613 3336 aa12.75□□□□□ -0.37
VRK3-224ENST00000601849 CEMIPQ8WUJ3 1361 aa12.74□□□□□ -0.37
VRK3-224ENST00000601849 LTBP3Q9NS15 1303 aa12.74□□□□□ -0.37
VRK3-224ENST00000601849 IQCA1LA6NCM1 817 aa12.74□□□□□ -0.37
VRK3-224ENST00000601849 CAMTA2O94983 1202 aa12.74□□□□□ -0.37
VRK3-224ENST00000601849 SRGNP10124 158 aa12.74□□□□□ -0.37
VRK3-224ENST00000601849 CCDC24Q8N4L8 307 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms