RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 COG6Q9Y2V7 657 aa14.77□□□□□ -0.05
VRK3-223ENST00000601341 TOGARAM1Q9Y4F4 1720 aa14.77□□□□□ -0.05
VRK3-223ENST00000601341 THSD7AQ9UPZ6 1657 aa14.76□□□□□ -0.05
VRK3-223ENST00000601341 SEPT12Q8IYM1 358 aa14.76□□□□□ -0.05
VRK3-223ENST00000601341 PRAMEF22A3QJZ6 481 aa14.75□□□□□ -0.05
VRK3-223ENST00000601341 PTCD1O75127 700 aaKnown RBP14.75□□□□□ -0.05
VRK3-223ENST00000601341 ATG3Q9NT62 314 aa14.75□□□□□ -0.05
VRK3-223ENST00000601341 CHPF2Q9P2E5 772 aa14.75□□□□□ -0.05
VRK3-223ENST00000601341 ASAP1Q9ULH1 1129 aa14.75□□□□□ -0.05
VRK3-223ENST00000601341 FLIIQ13045 1269 aa14.75□□□□□ -0.05
VRK3-223ENST00000601341 MVPQ14764 893 aaKnown RBP14.75□□□□□ -0.05
VRK3-223ENST00000601341 G2E3Q7L622 706 aa14.74□□□□□ -0.05
VRK3-223ENST00000601341 VSIG10Q8N0Z9 540 aa14.74□□□□□ -0.05
VRK3-223ENST00000601341 ACSBG1Q96GR2 724 aa14.74□□□□□ -0.05
VRK3-223ENST00000601341 RBM6P78332 1123 aaKnown RBP14.73□□□□□ -0.05
VRK3-223ENST00000601341 DDX21Q9NR30 783 aaKnown RBP eCLIP14.73□□□□□ -0.05
VRK3-223ENST00000601341 DDX19BQ9UMR2 479 aa14.73□□□□□ -0.05
VRK3-223ENST00000601341 USP16Q9Y5T5 823 aa14.73□□□□□ -0.05
VRK3-223ENST00000601341 ABCC4O15439 1325 aa14.73□□□□□ -0.05
VRK3-223ENST00000601341 KCPQ6ZWJ8 1503 aa14.73□□□□□ -0.05
VRK3-223ENST00000601341 FKBP5Q13451 457 aaPredicted RBP14.73□□□□□ -0.05
VRK3-223ENST00000601341 ITPRIPQ8IWB1 547 aa14.73□□□□□ -0.05
VRK3-223ENST00000601341 TMEM57Q8N5G2 664 aa14.73□□□□□ -0.05
VRK3-223ENST00000601341 TEX13AQ9BXU3 409 aaPredicted RBP14.73□□□□□ -0.05
VRK3-223ENST00000601341 HYPKQ9NX55 129 aa14.73□□□□□ -0.05
VRK3-223ENST00000601341 PAPPAQ13219 1627 aa14.72□□□□□ -0.05
VRK3-223ENST00000601341 C8orf34Q49A92 452 aa14.71□□□□□ -0.05
VRK3-223ENST00000601341 RBM42Q9BTD8 480 aaKnown RBP14.71□□□□□ -0.05
VRK3-223ENST00000601341 CHMP4BQ9H444 224 aaKnown RBP14.71□□□□□ -0.05
VRK3-223ENST00000601341 PHAXQ9H814 394 aaKnown RBP14.71□□□□□ -0.05
VRK3-223ENST00000601341 ERBB4Q15303 1308 aa14.71□□□□□ -0.05
VRK3-223ENST00000601341 ITGB4P16144 1822 aa14.71□□□□□ -0.05
VRK3-223ENST00000601341 DOT1LQ8TEK3 1739 aa14.71□□□□□ -0.06
VRK3-223ENST00000601341 UBR2Q8IWV8 1755 aa14.71□□□□□ -0.06
VRK3-223ENST00000601341 PDIA6Q15084 440 aa14.7□□□□□ -0.06
VRK3-223ENST00000601341 SMARCC1Q92922 1105 aaPredicted RBP14.7□□□□□ -0.06
VRK3-223ENST00000601341 RGS12O14924 1447 aa14.7□□□□□ -0.06
VRK3-223ENST00000601341 KCNQ2O43526 872 aa14.7□□□□□ -0.06
VRK3-223ENST00000601341 ANXA1P04083 346 aa14.7□□□□□ -0.06
VRK3-223ENST00000601341 INTS3Q68E01 1043 aaKnown RBP14.7□□□□□ -0.06
VRK3-223ENST00000601341 CACNA1FO60840 1977 aa14.69□□□□□ -0.06
VRK3-223ENST00000601341 STARD3NLO95772 234 aa14.69□□□□□ -0.06
VRK3-223ENST00000601341 PROSER3Q2NL68 480 aa14.69□□□□□ -0.06
VRK3-223ENST00000601341 KAT6BQ8WYB5 2073 aa14.69□□□□□ -0.06
VRK3-223ENST00000601341 RXRBP28702 533 aa14.68□□□□□ -0.06
VRK3-223ENST00000601341 CCT4P50991 539 aaKnown RBP14.68□□□□□ -0.06
VRK3-223ENST00000601341 C5P01031 1676 aa14.68□□□□□ -0.06
VRK3-223ENST00000601341 F6X3S4 739 aa14.68□□□□□ -0.06
VRK3-223ENST00000601341 DDX58O95786 925 aaKnown RBP14.68□□□□□ -0.06
VRK3-223ENST00000601341 MYL6BP14649 208 aa14.68□□□□□ -0.06
VRK3-223ENST00000601341 FAM182BQ5T319 152 aa14.68□□□□□ -0.06
VRK3-223ENST00000601341 SLC4A10Q6U841 1118 aa14.68□□□□□ -0.06
VRK3-223ENST00000601341 KRT27Q7Z3Y8 459 aa14.68□□□□□ -0.06
VRK3-223ENST00000601341 DNAJC10Q8IXB1 793 aa14.67□□□□□ -0.06
VRK3-223ENST00000601341 PI4KAP2A4QPH2 592 aa14.66□□□□□ -0.06
VRK3-223ENST00000601341 ZBTB7BO15156 539 aaPredicted RBP14.66□□□□□ -0.06
VRK3-223ENST00000601341 IGHDP01880 384 aa14.66□□□□□ -0.06
VRK3-223ENST00000601341 A1BGP04217 495 aa14.66□□□□□ -0.06
VRK3-223ENST00000601341 FAM196AQ6ZSG2 479 aa14.66□□□□□ -0.06
VRK3-223ENST00000601341 NPM2Q86SE8 214 aaKnown RBP14.66□□□□□ -0.06
VRK3-223ENST00000601341 PI4KAP1Q8N8J0 262 aa14.66□□□□□ -0.06
VRK3-223ENST00000601341 SLC4A9Q96Q91 983 aa14.66□□□□□ -0.06
VRK3-223ENST00000601341 ZBTB40Q9NUA8 1239 aa14.66□□□□□ -0.06
VRK3-223ENST00000601341 PALLDQ8WX93 1383 aa14.66□□□□□ -0.06
VRK3-223ENST00000601341 LOC102724428A0A0B4J2F2 783 aa14.65□□□□□ -0.06
VRK3-223ENST00000601341 SIK1P57059 783 aa14.65□□□□□ -0.06
VRK3-223ENST00000601341 RTL5Q5HYW3 569 aaPredicted RBP14.65□□□□□ -0.06
VRK3-223ENST00000601341 KSR2Q6VAB6 950 aa14.65□□□□□ -0.06
VRK3-223ENST00000601341 LRP10Q7Z4F1 713 aa14.65□□□□□ -0.06
VRK3-223ENST00000601341 DNAAF4Q8WXU2 420 aa14.65□□□□□ -0.06
VRK3-223ENST00000601341 RWDD1Q9H446 243 aaPredicted RBP14.65□□□□□ -0.06
VRK3-223ENST00000601341 NBPF26B4DH59 902 aa14.65□□□□□ -0.06
VRK3-223ENST00000601341 AIMP1Q12904 312 aaKnown RBP14.65□□□□□ -0.06
VRK3-223ENST00000601341 NBPF14Q5TI25 921 aa14.65□□□□□ -0.06
VRK3-223ENST00000601341 NBPF10Q6P3W6 841 aaKnown RBP14.65□□□□□ -0.06
VRK3-223ENST00000601341 COPS6Q7L5N1 327 aa14.65□□□□□ -0.06
VRK3-223ENST00000601341 NBPF15Q8N660 670 aa14.65□□□□□ -0.06
VRK3-223ENST00000601341 XAGE3Q8WTP9 111 aa14.65□□□□□ -0.06
VRK3-223ENST00000601341 LAMB4A4D0S4 1761 aa14.64□□□□□ -0.07
VRK3-223ENST00000601341 CYP19A1P11511 503 aaPredicted RBP14.64□□□□□ -0.07
VRK3-223ENST00000601341 ATP6V1AP38606 617 aa14.64□□□□□ -0.07
VRK3-223ENST00000601341 PIP4K2AP48426 406 aaPredicted RBP14.64□□□□□ -0.07
VRK3-223ENST00000601341 RGS17Q9UGC6 210 aaPredicted RBP14.64□□□□□ -0.07
VRK3-223ENST00000601341 PXDNLA1KZ92 1463 aa14.63□□□□□ -0.07
VRK3-223ENST00000601341 BCL11BQ9C0K0 894 aaPredicted RBP14.63□□□□□ -0.07
VRK3-223ENST00000601341 MAP3K2Q9Y2U5 619 aa14.63□□□□□ -0.07
VRK3-223ENST00000601341 ADCY9O60503 1353 aa14.63□□□□□ -0.07
VRK3-223ENST00000601341 ANKRD13DQ6ZTN6 518 aa14.62□□□□□ -0.07
VRK3-223ENST00000601341 PTF1AQ7RTS3 328 aa14.62□□□□□ -0.07
VRK3-223ENST00000601341 SRCIN1Q9C0H9 1055 aa14.62□□□□□ -0.07
VRK3-223ENST00000601341 RIC3Q7Z5B4 369 aa14.62□□□□□ -0.07
VRK3-223ENST00000601341 RGS3P49796 1198 aa14.61□□□□□ -0.07
VRK3-223ENST00000601341 BEND3Q5T5X7 828 aa14.61□□□□□ -0.07
VRK3-223ENST00000601341 POTEAQ6S8J7 498 aa14.61□□□□□ -0.07
VRK3-223ENST00000601341 PCDHB15Q9Y5E8 787 aa14.61□□□□□ -0.07
VRK3-223ENST00000601341 NHSQ6T4R5 1651 aa14.61□□□□□ -0.07
VRK3-223ENST00000601341 HDAC1Q13547 482 aaPredicted RBP14.6□□□□□ -0.07
VRK3-223ENST00000601341 SKAP1Q86WV1 359 aa14.6□□□□□ -0.07
VRK3-223ENST00000601341 PLBD2Q8NHP8 589 aa14.6□□□□□ -0.07
VRK3-223ENST00000601341 ATP10DQ9P241 1426 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms