RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 RTF1Q92541 710 aaKnown RBP21.07■□□□□ 0.96
VRK3-221ENST00000600284 HEG1Q9ULI3 1381 aa21.07■□□□□ 0.96
VRK3-221ENST00000600284 BTBD11A6QL63 1104 aa21.06■□□□□ 0.96
VRK3-221ENST00000600284 FMNL2Q96PY5 1086 aa21.06■□□□□ 0.96
VRK3-221ENST00000600284 COL15A1P39059 1388 aa21.06■□□□□ 0.96
VRK3-221ENST00000600284 A0A0G2JLW4 131 aa21.05■□□□□ 0.96
VRK3-221ENST00000600284 A0A087WZG4 1122 aa21.04■□□□□ 0.96
VRK3-221ENST00000600284 POLRMTO00411 1230 aaKnown RBP21.04■□□□□ 0.96
VRK3-221ENST00000600284 CANXP27824 592 aaKnown RBP21.04■□□□□ 0.96
VRK3-221ENST00000600284 EIF5P55010 431 aaKnown RBP21.04■□□□□ 0.96
VRK3-221ENST00000600284 DDR1Q08345 913 aa21.04■□□□□ 0.96
VRK3-221ENST00000600284 SIPA1L3O60292 1781 aaPredicted RBP21.04■□□□□ 0.96
VRK3-221ENST00000600284 NEFMP07197 916 aa21.03■□□□□ 0.96
VRK3-221ENST00000600284 DPEP1P16444 411 aa21.03■□□□□ 0.96
VRK3-221ENST00000600284 WWC3Q9ULE0 1092 aa21.03■□□□□ 0.96
VRK3-221ENST00000600284 KIAA1551Q9HCM1 1747 aa21.01■□□□□ 0.95
VRK3-221ENST00000600284 IL6STP40189 918 aaPredicted RBP21.01■□□□□ 0.95
VRK3-221ENST00000600284 MCM10Q7L590 875 aa21.01■□□□□ 0.95
VRK3-221ENST00000600284 PNNQ9H307 717 aaKnown RBP21.01■□□□□ 0.95
VRK3-221ENST00000600284 BCL2L12Q9HB09 334 aa21.01■□□□□ 0.95
VRK3-221ENST00000600284 BCS1LQ9Y276 419 aa21.01■□□□□ 0.95
VRK3-221ENST00000600284 KCNA3P22001 575 aa21■□□□□ 0.95
VRK3-221ENST00000600284 NFIXQ14938 502 aa21■□□□□ 0.95
VRK3-221ENST00000600284 RALBP1Q15311 655 aa21■□□□□ 0.95
VRK3-221ENST00000600284 PIM2Q9P1W9 311 aa21■□□□□ 0.95
VRK3-221ENST00000600284 ADCY9O60503 1353 aa20.99■□□□□ 0.95
VRK3-221ENST00000600284 N4BP2Q86UW6 1770 aaPredicted RBP20.99■□□□□ 0.95
VRK3-221ENST00000600284 KCNQ3O43525 872 aa20.98■□□□□ 0.95
VRK3-221ENST00000600284 GIGYF1O75420 1035 aaPredicted RBP20.98■□□□□ 0.95
VRK3-221ENST00000600284 C1QTNF8P60827 252 aa20.98■□□□□ 0.95
VRK3-221ENST00000600284 PLEKHF1Q96S99 279 aa20.98■□□□□ 0.95
VRK3-221ENST00000600284 ATP10DQ9P241 1426 aa20.97■□□□□ 0.95
VRK3-221ENST00000600284 TAF7Q15545 349 aaPredicted RBP20.97■□□□□ 0.95
VRK3-221ENST00000600284 NPM2Q86SE8 214 aaKnown RBP20.97■□□□□ 0.95
VRK3-221ENST00000600284 SERPINB2P05120 415 aa20.96■□□□□ 0.95
VRK3-221ENST00000600284 SNRPA1P09661 255 aaKnown RBP20.96■□□□□ 0.95
VRK3-221ENST00000600284 DCTN1Q14203 1278 aa20.96■□□□□ 0.95
VRK3-221ENST00000600284 A1BGP04217 495 aa20.95■□□□□ 0.94
VRK3-221ENST00000600284 DALRD3Q5D0E6 543 aaKnown RBP20.95■□□□□ 0.94
VRK3-221ENST00000600284 USP16Q9Y5T5 823 aa20.95■□□□□ 0.94
VRK3-221ENST00000600284 ARHGAP27Q6ZUM4 889 aa20.94■□□□□ 0.94
VRK3-221ENST00000600284 PNISRQ8TF01 805 aaKnown RBP20.94■□□□□ 0.94
VRK3-221ENST00000600284 GPBP1L1Q9HC44 474 aaPredicted RBP20.94■□□□□ 0.94
VRK3-221ENST00000600284 DDX10Q13206 875 aaKnown RBP20.93■□□□□ 0.94
VRK3-221ENST00000600284 NFE2L2Q16236 605 aa20.93■□□□□ 0.94
VRK3-221ENST00000600284 TBC1D2BQ9UPU7 963 aa20.93■□□□□ 0.94
VRK3-221ENST00000600284 ZNF330Q9Y3S2 320 aaPredicted RBP20.93■□□□□ 0.94
VRK3-221ENST00000600284 BRCA1P38398 1863 aaKnown RBP20.92■□□□□ 0.94
VRK3-221ENST00000600284 CHRNA5P30532 468 aa20.92■□□□□ 0.94
VRK3-221ENST00000600284 NRXN2Q9P2S2 1712 aa20.92■□□□□ 0.94
VRK3-221ENST00000600284 TBC1D9BQ66K14 1250 aa20.91■□□□□ 0.94
VRK3-221ENST00000600284 MAPK8IP3Q9UPT6 1336 aa20.91■□□□□ 0.94
VRK3-221ENST00000600284 CAMTA2O94983 1202 aa20.9■□□□□ 0.94
VRK3-221ENST00000600284 BICDL1Q6ZP65 573 aa20.9■□□□□ 0.94
VRK3-221ENST00000600284 DZIP3Q86Y13 1208 aaKnown RBP20.9■□□□□ 0.94
VRK3-221ENST00000600284 PDZRN3Q9UPQ7 1066 aa20.9■□□□□ 0.94
VRK3-221ENST00000600284 PRAMEF22A3QJZ6 481 aa20.89■□□□□ 0.93
VRK3-221ENST00000600284 RGL2O15211 777 aa20.89■□□□□ 0.93
VRK3-221ENST00000600284 CLEC4GQ6UXB4 293 aa20.89■□□□□ 0.93
VRK3-221ENST00000600284 AFDNP55196 1824 aaKnown RBP20.89■□□□□ 0.93
VRK3-221ENST00000600284 ARFGEF1Q9Y6D6 1849 aa20.89■□□□□ 0.93
VRK3-221ENST00000600284 CARMIL3Q8ND23 1372 aa20.88■□□□□ 0.93
VRK3-221ENST00000600284 MYBBP1AQ9BQG0 1328 aaKnown RBP20.88■□□□□ 0.93
VRK3-221ENST00000600284 SETDB2Q96T68 719 aa20.88■□□□□ 0.93
VRK3-221ENST00000600284 H0YIN7 160 aa20.87■□□□□ 0.93
VRK3-221ENST00000600284 BRIP1Q9BX63 1249 aa20.87■□□□□ 0.93
VRK3-221ENST00000600284 MIS18AQ9NYP9 233 aa20.87■□□□□ 0.93
VRK3-221ENST00000600284 SCN7AQ01118 1682 aa20.86■□□□□ 0.93
VRK3-221ENST00000600284 PDE6BP35913 854 aa20.85■□□□□ 0.93
VRK3-221ENST00000600284 PRR5LQ6MZQ0 368 aa20.85■□□□□ 0.93
VRK3-221ENST00000600284 C2CD5Q86YS7 1000 aa20.85■□□□□ 0.93
VRK3-221ENST00000600284 TTLL6Q8N841 843 aa20.85■□□□□ 0.93
VRK3-221ENST00000600284 ZNF526Q8TF50 670 aaPredicted RBP20.85■□□□□ 0.93
VRK3-221ENST00000600284 ZNF652Q9Y2D9 606 aa20.85■□□□□ 0.93
VRK3-221ENST00000600284 DLG5Q8TDM6 1919 aa20.84■□□□□ 0.93
VRK3-221ENST00000600284 NBPF26B4DH59 902 aa20.84■□□□□ 0.93
VRK3-221ENST00000600284 PIP4K2AP48426 406 aaPredicted RBP20.84■□□□□ 0.93
VRK3-221ENST00000600284 EIF4A1P60842 406 aaKnown RBP20.84■□□□□ 0.93
VRK3-221ENST00000600284 NBPF10Q6P3W6 841 aaKnown RBP20.84■□□□□ 0.93
VRK3-221ENST00000600284 NBPF15Q8N660 670 aa20.84■□□□□ 0.93
VRK3-221ENST00000600284 SENP3-EIF4A1A0A087X0R7 540 aa20.83■□□□□ 0.93
VRK3-221ENST00000600284 C9orf131Q5VYM1 1079 aa20.83■□□□□ 0.93
VRK3-221ENST00000600284 RIPK4P57078 832 aa20.82■□□□□ 0.92
VRK3-221ENST00000600284 LMOD3Q0VAK6 560 aa20.82■□□□□ 0.92
VRK3-221ENST00000600284 CNBD1Q8NA66 436 aa20.82■□□□□ 0.92
VRK3-221ENST00000600284 THUMPD2Q9BTF0 503 aaKnown RBP20.82■□□□□ 0.92
VRK3-221ENST00000600284 BABAM1Q9NWV8 329 aa20.82■□□□□ 0.92
VRK3-221ENST00000600284 ST5P78524 1137 aa20.81■□□□□ 0.92
VRK3-221ENST00000600284 KIF3CO14782 793 aa20.8■□□□□ 0.92
VRK3-221ENST00000600284 NPHP1O15259 732 aa20.8■□□□□ 0.92
VRK3-221ENST00000600284 TMPOP42166 694 aaKnown RBP20.8■□□□□ 0.92
VRK3-221ENST00000600284 BCORQ6W2J9 1755 aa20.8■□□□□ 0.92
VRK3-221ENST00000600284 KDM3BQ7LBC6 1761 aa20.8■□□□□ 0.92
VRK3-221ENST00000600284 DLEC1Q9Y238 1755 aa20.8■□□□□ 0.92
VRK3-221ENST00000600284 RNF181Q9P0P0 153 aa20.79■□□□□ 0.92
VRK3-221ENST00000600284 TPTE2Q6XPS3 522 aa20.78■□□□□ 0.92
VRK3-221ENST00000600284 NBPF5PQ86XG9 351 aaPredicted RBP20.78■□□□□ 0.92
VRK3-221ENST00000600284 ZNF622Q969S3 477 aaKnown RBP eCLIP20.78■□□□□ 0.92
VRK3-221ENST00000600284 ERVV-1B6SEH8 477 aa20.77■□□□□ 0.92
VRK3-221ENST00000600284 WDR43Q15061 677 aaKnown RBP eCLIP20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms