RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TGFB2P61812 414 aa11.86□□□□□ -0.51
SHKBP1-220ENST00000599716 CCDC87Q9NVE4 849 aa11.86□□□□□ -0.51
SHKBP1-220ENST00000599716 ZNF831Q5JPB2 1677 aa11.86□□□□□ -0.51
SHKBP1-220ENST00000599716 TNRC6CQ9HCJ0 1690 aaKnown RBP11.86□□□□□ -0.51
SHKBP1-220ENST00000599716 HSP90AB1P08238 724 aaKnown RBP11.85□□□□□ -0.51
SHKBP1-220ENST00000599716 LBX1P52954 281 aa11.85□□□□□ -0.51
SHKBP1-220ENST00000599716 CNGB1Q14028 1251 aaPredicted RBP11.85□□□□□ -0.51
SHKBP1-220ENST00000599716 C1orf141Q5JVX7 400 aa11.85□□□□□ -0.51
SHKBP1-220ENST00000599716 RC3H1Q5TC82 1133 aaKnown RBP11.85□□□□□ -0.51
SHKBP1-220ENST00000599716 LGR6Q9HBX8 967 aa11.85□□□□□ -0.51
SHKBP1-220ENST00000599716 CREBZFQ9NS37 354 aa11.85□□□□□ -0.51
SHKBP1-220ENST00000599716 MKRN1Q9UHC7 482 aaKnown RBP11.85□□□□□ -0.51
SHKBP1-220ENST00000599716 HMOX1P09601 288 aa11.84□□□□□ -0.51
SHKBP1-220ENST00000599716 EIF4G2P78344 907 aaKnown RBP eCLIP11.84□□□□□ -0.51
SHKBP1-220ENST00000599716 SLC39A6Q13433 755 aa11.84□□□□□ -0.51
SHKBP1-220ENST00000599716 INTS5Q6P9B9 1019 aaKnown RBP11.84□□□□□ -0.51
SHKBP1-220ENST00000599716 DNAJC10Q8IXB1 793 aa11.84□□□□□ -0.51
SHKBP1-220ENST00000599716 SCN11AQ9UI33 1791 aa11.84□□□□□ -0.51
SHKBP1-220ENST00000599716 ADAMTS7Q9UKP4 1686 aa11.84□□□□□ -0.51
SHKBP1-220ENST00000599716 HOXD11P31277 338 aaPredicted RBP11.83□□□□□ -0.52
SHKBP1-220ENST00000599716 IL13P35225 146 aa11.83□□□□□ -0.52
SHKBP1-220ENST00000599716 AMOTQ4VCS5 1084 aa11.83□□□□□ -0.52
SHKBP1-220ENST00000599716 USP42Q9H9J4 1324 aaKnown RBP11.83□□□□□ -0.52
SHKBP1-220ENST00000599716 CNTNAP1P78357 1384 aa11.82□□□□□ -0.52
SHKBP1-220ENST00000599716 VIRMAQ69YN4 1812 aaKnown RBP11.82□□□□□ -0.52
SHKBP1-220ENST00000599716 ARFGEF1Q9Y6D6 1849 aa11.82□□□□□ -0.52
SHKBP1-220ENST00000599716 USPL1Q5W0Q7 1092 aa11.82□□□□□ -0.52
SHKBP1-220ENST00000599716 WBP1LQ9NX94 342 aa11.82□□□□□ -0.52
SHKBP1-220ENST00000599716 ZC3H4Q9UPT8 1303 aaKnown RBP11.82□□□□□ -0.52
SHKBP1-220ENST00000599716 POLRMTO00411 1230 aaKnown RBP11.81□□□□□ -0.52
SHKBP1-220ENST00000599716 VEGFAP15692 232 aaPredicted RBP11.81□□□□□ -0.52
SHKBP1-220ENST00000599716 RASSF7Q02833 373 aa11.81□□□□□ -0.52
SHKBP1-220ENST00000599716 RNF181Q9P0P0 153 aa11.81□□□□□ -0.52
SHKBP1-220ENST00000599716 PIM2Q9P1W9 311 aa11.81□□□□□ -0.52
SHKBP1-220ENST00000599716 DALRD3Q5D0E6 543 aaKnown RBP11.8□□□□□ -0.52
SHKBP1-220ENST00000599716 TIMELESSQ9UNS1 1208 aa11.8□□□□□ -0.52
SHKBP1-220ENST00000599716 ZBTB1Q9Y2K1 713 aa11.8□□□□□ -0.52
SHKBP1-220ENST00000599716 AFDNP55196 1824 aaKnown RBP11.8□□□□□ -0.52
SHKBP1-220ENST00000599716 SBF1O95248 1867 aa11.79□□□□□ -0.52
SHKBP1-220ENST00000599716 HSPA8P11142 646 aaKnown RBP11.79□□□□□ -0.52
SHKBP1-220ENST00000599716 TM4SF1P30408 202 aa11.79□□□□□ -0.52
SHKBP1-220ENST00000599716 SLC52A2Q9HAB3 445 aa11.79□□□□□ -0.52
SHKBP1-220ENST00000599716 KNSTRNQ9Y448 316 aa11.79□□□□□ -0.52
SHKBP1-220ENST00000599716 SOS1Q07889 1333 aaPredicted RBP11.79□□□□□ -0.52
SHKBP1-220ENST00000599716 CARMIL3Q8ND23 1372 aa11.79□□□□□ -0.52
SHKBP1-220ENST00000599716 RNMTO43148 476 aaKnown RBP11.78□□□□□ -0.52
SHKBP1-220ENST00000599716 CYP19A1P11511 503 aaPredicted RBP11.78□□□□□ -0.52
SHKBP1-220ENST00000599716 NFIXQ14938 502 aa11.78□□□□□ -0.52
SHKBP1-220ENST00000599716 MTHFSDQ2M296 383 aaKnown RBP11.78□□□□□ -0.52
SHKBP1-220ENST00000599716 AKAP4Q5JQC9 854 aa11.78□□□□□ -0.52
SHKBP1-220ENST00000599716 AMER1Q5JTC6 1135 aaPredicted RBP11.78□□□□□ -0.52
SHKBP1-220ENST00000599716 PRPF38BQ5VTL8 546 aaKnown RBP11.78□□□□□ -0.52
SHKBP1-220ENST00000599716 BICDL1Q6ZP65 573 aa11.78□□□□□ -0.52
SHKBP1-220ENST00000599716 CCDC24Q8N4L8 307 aa11.78□□□□□ -0.52
SHKBP1-220ENST00000599716 BCL2L12Q9HB09 334 aa11.78□□□□□ -0.52
SHKBP1-220ENST00000599716 ZPR1O75312 459 aa11.77□□□□□ -0.53
SHKBP1-220ENST00000599716 CANXP27824 592 aaKnown RBP11.77□□□□□ -0.53
SHKBP1-220ENST00000599716 CC2D1BQ5T0F9 858 aaKnown RBP11.77□□□□□ -0.53
SHKBP1-220ENST00000599716 COL15A1P39059 1388 aa11.77□□□□□ -0.53
SHKBP1-220ENST00000599716 MRC1P22897 1456 aa11.76□□□□□ -0.53
SHKBP1-220ENST00000599716 CCER1Q8TC90 406 aaPredicted RBP11.76□□□□□ -0.53
SHKBP1-220ENST00000599716 ZNF219Q9P2Y4 722 aaPredicted RBP11.76□□□□□ -0.53
SHKBP1-220ENST00000599716 KIF7Q2M1P5 1343 aa11.76□□□□□ -0.53
SHKBP1-220ENST00000599716 CCDC88AQ3V6T2 1871 aa11.75□□□□□ -0.53
SHKBP1-220ENST00000599716 CFAP44Q96MT7 982 aa11.75□□□□□ -0.53
SHKBP1-220ENST00000599716 ZNF330Q9Y3S2 320 aaPredicted RBP11.75□□□□□ -0.53
SHKBP1-220ENST00000599716 GLTPD2A6NH11 291 aa11.74□□□□□ -0.53
SHKBP1-220ENST00000599716 SERPINB2P05120 415 aa11.74□□□□□ -0.53
SHKBP1-220ENST00000599716 VEGFBP49765 207 aa11.74□□□□□ -0.53
SHKBP1-220ENST00000599716 NARFQ9UHQ1 456 aa11.74□□□□□ -0.53
SHKBP1-220ENST00000599716 CLSPNQ9HAW4 1339 aa11.74□□□□□ -0.53
SHKBP1-220ENST00000599716 NRXN2Q9P2S2 1712 aa11.74□□□□□ -0.53
SHKBP1-220ENST00000599716 PPP4R3CPQ6ZMV5 832 aa11.73□□□□□ -0.53
SHKBP1-220ENST00000599716 C2CD5Q86YS7 1000 aa11.73□□□□□ -0.53
SHKBP1-220ENST00000599716 UBR2Q8IWV8 1755 aa11.73□□□□□ -0.53
SHKBP1-220ENST00000599716 ANKRD31Q8N7Z5 1873 aa11.73□□□□□ -0.53
SHKBP1-220ENST00000599716 DLEC1Q9Y238 1755 aa11.73□□□□□ -0.53
SHKBP1-220ENST00000599716 COL11A2P13942 1736 aaPredicted RBP11.72□□□□□ -0.53
SHKBP1-220ENST00000599716 TIAM2Q8IVF5 1701 aa11.72□□□□□ -0.53
SHKBP1-220ENST00000599716 NFKBIEO00221 500 aa11.72□□□□□ -0.53
SHKBP1-220ENST00000599716 U2SURPO15042 1029 aaKnown RBP11.72□□□□□ -0.53
SHKBP1-220ENST00000599716 DIAPH1O60610 1272 aaKnown RBP11.72□□□□□ -0.53
SHKBP1-220ENST00000599716 PIP4K2AP48426 406 aaPredicted RBP11.72□□□□□ -0.53
SHKBP1-220ENST00000599716 MAP2K1Q02750 393 aaPredicted RBP11.72□□□□□ -0.53
SHKBP1-220ENST00000599716 TBC1D9BQ66K14 1250 aa11.72□□□□□ -0.53
SHKBP1-220ENST00000599716 ZNF496Q96IT1 587 aaPredicted RBP11.72□□□□□ -0.53
SHKBP1-220ENST00000599716 TBC1D2BQ9UPU7 963 aa11.72□□□□□ -0.53
SHKBP1-220ENST00000599716 KCNQ3O43525 872 aa11.71□□□□□ -0.53
SHKBP1-220ENST00000599716 CHADLQ6NUI6 762 aa11.71□□□□□ -0.53
SHKBP1-220ENST00000599716 IL17REQ8NFR9 667 aa11.71□□□□□ -0.53
SHKBP1-220ENST00000599716 CACNA1SQ13698 1873 aa11.71□□□□□ -0.53
SHKBP1-220ENST00000599716 COL3A1P02461 1466 aaPredicted RBP11.7□□□□□ -0.54
SHKBP1-220ENST00000599716 PER1O15534 1290 aaPredicted RBP11.7□□□□□ -0.54
SHKBP1-220ENST00000599716 A1BGP04217 495 aa11.7□□□□□ -0.54
SHKBP1-220ENST00000599716 C1QBPQ07021 282 aaKnown RBP11.7□□□□□ -0.54
SHKBP1-220ENST00000599716 TTC5Q8N0Z6 440 aa11.7□□□□□ -0.54
SHKBP1-220ENST00000599716 TTLL6Q8N841 843 aa11.7□□□□□ -0.54
SHKBP1-220ENST00000599716 ZNF622Q969S3 477 aaKnown RBP eCLIP11.7□□□□□ -0.54
SHKBP1-220ENST00000599716 PRAMEF22A3QJZ6 481 aa11.69□□□□□ -0.54
SHKBP1-220ENST00000599716 C21orf2O43822 256 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms