RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 TJP1Q07157 1748 aa19.18■□□□□ 0.66
SHKBP1-218ENST00000598907 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.18■□□□□ 0.66
SHKBP1-218ENST00000598907 CCDC85CA6NKD9 419 aa19.17■□□□□ 0.66
SHKBP1-218ENST00000598907 EYA1Q99502 592 aa19.17■□□□□ 0.66
SHKBP1-218ENST00000598907 ZNF219Q9P2Y4 722 aaPredicted RBP19.17■□□□□ 0.66
SHKBP1-218ENST00000598907 ANKRD26Q9UPS8 1709 aa19.17■□□□□ 0.66
SHKBP1-218ENST00000598907 VIRMAQ69YN4 1812 aaKnown RBP19.16■□□□□ 0.66
SHKBP1-218ENST00000598907 TTLL6Q8N841 843 aa19.16■□□□□ 0.66
SHKBP1-218ENST00000598907 TESK2Q96S53 571 aa19.16■□□□□ 0.66
SHKBP1-218ENST00000598907 ADAMTS7Q9UKP4 1686 aa19.15■□□□□ 0.66
SHKBP1-218ENST00000598907 HSPA8P11142 646 aaKnown RBP19.15■□□□□ 0.66
SHKBP1-218ENST00000598907 USPL1Q5W0Q7 1092 aa19.15■□□□□ 0.66
SHKBP1-218ENST00000598907 C2CD5Q86YS7 1000 aa19.15■□□□□ 0.66
SHKBP1-218ENST00000598907 TM4SF1P30408 202 aa19.14■□□□□ 0.65
SHKBP1-218ENST00000598907 ERFEQ4G0M1 354 aa19.14■□□□□ 0.65
SHKBP1-218ENST00000598907 WBP1LQ9NX94 342 aa19.14■□□□□ 0.65
SHKBP1-218ENST00000598907 CARMIL3Q8ND23 1372 aa19.14■□□□□ 0.65
SHKBP1-218ENST00000598907 ERVV-2B6SEH9 535 aa19.13■□□□□ 0.65
SHKBP1-218ENST00000598907 ZPR1O75312 459 aa19.13■□□□□ 0.65
SHKBP1-218ENST00000598907 CABP4P57796 275 aa19.13■□□□□ 0.65
SHKBP1-218ENST00000598907 NRXN2Q9P2S2 1712 aa19.12■□□□□ 0.65
SHKBP1-218ENST00000598907 PASKQ96RG2 1323 aa19.12■□□□□ 0.65
SHKBP1-218ENST00000598907 ST20-MTHFSA0A0A6YYL1 179 aa19.12■□□□□ 0.65
SHKBP1-218ENST00000598907 DDNO94850 711 aaPredicted RBP19.12■□□□□ 0.65
SHKBP1-218ENST00000598907 CFAP44Q96MT7 982 aa19.12■□□□□ 0.65
SHKBP1-218ENST00000598907 DICER1Q9UPY3 1922 aaKnown RBP19.12■□□□□ 0.65
SHKBP1-218ENST00000598907 TMEM88BA6NKF7 163 aa19.11■□□□□ 0.65
SHKBP1-218ENST00000598907 EIF4G2P78344 907 aaKnown RBP eCLIP19.11■□□□□ 0.65
SHKBP1-218ENST00000598907 NFIXQ14938 502 aa19.11■□□□□ 0.65
SHKBP1-218ENST00000598907 HSPA5P11021 654 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-218ENST00000598907 INTS5Q6P9B9 1019 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-218ENST00000598907 WASHC2AQ641Q2 1341 aa19.08■□□□□ 0.65
SHKBP1-218ENST00000598907 H0YIN7 160 aa19.08■□□□□ 0.64
SHKBP1-218ENST00000598907 C21orf2O43822 256 aa19.08■□□□□ 0.64
SHKBP1-218ENST00000598907 SERPINB2P05120 415 aa19.08■□□□□ 0.64
SHKBP1-218ENST00000598907 HSP90AB1P08238 724 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-218ENST00000598907 LDHDQ86WU2 507 aa19.08■□□□□ 0.64
SHKBP1-218ENST00000598907 COL11A2P13942 1736 aaPredicted RBP19.08■□□□□ 0.64
SHKBP1-218ENST00000598907 FER1L6Q2WGJ9 1857 aa19.07■□□□□ 0.64
SHKBP1-218ENST00000598907 EAPPQ56P03 285 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-218ENST00000598907 ZNF530Q6P9A1 599 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-218ENST00000598907 ZNF622Q969S3 477 aaKnown RBP eCLIP19.07■□□□□ 0.642e-8■□□□□ 10.5
SHKBP1-218ENST00000598907 CACNA1SQ13698 1873 aa19.05■□□□□ 0.64
SHKBP1-218ENST00000598907 SOS1Q07889 1333 aaPredicted RBP19.05■□□□□ 0.64
SHKBP1-218ENST00000598907 ANKRD31Q8N7Z5 1873 aa19.05■□□□□ 0.64
SHKBP1-218ENST00000598907 COL15A1P39059 1388 aa19.05■□□□□ 0.64
SHKBP1-218ENST00000598907 IQCA1LA6NCM1 817 aa19.04■□□□□ 0.64
SHKBP1-218ENST00000598907 RGS19P49795 217 aa19.04■□□□□ 0.64
SHKBP1-218ENST00000598907 MAP2K1Q02750 393 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-218ENST00000598907 EIF4A2Q14240 407 aaKnown RBP19.04■□□□□ 0.64
SHKBP1-218ENST00000598907 BICDL1Q6ZP65 573 aa19.04■□□□□ 0.64
SHKBP1-218ENST00000598907 DNAJC10Q8IXB1 793 aa19.04■□□□□ 0.64
SHKBP1-218ENST00000598907 TAOK3Q9H2K8 898 aa19.04■□□□□ 0.64
SHKBP1-218ENST00000598907 TAF1DQ9H5J8 278 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-218ENST00000598907 CLEC11AQ9Y240 323 aa19.04■□□□□ 0.64
SHKBP1-218ENST00000598907 DEFB115Q30KQ5 88 aa19.03■□□□□ 0.64
SHKBP1-218ENST00000598907 NFATC2IPQ8NCF5 419 aa19.03■□□□□ 0.64
SHKBP1-218ENST00000598907 ABT1Q9ULW3 272 aaKnown RBP19.03■□□□□ 0.64
SHKBP1-218ENST00000598907 WDR33Q9C0J8 1336 aaKnown RBP19.02■□□□□ 0.64
SHKBP1-218ENST00000598907 SCN4AP35499 1836 aa19.02■□□□□ 0.64
SHKBP1-218ENST00000598907 RASSF10A6NK89 507 aa19.02■□□□□ 0.64
SHKBP1-218ENST00000598907 ITGBL1O95965 494 aaPredicted RBP19.02■□□□□ 0.64
SHKBP1-218ENST00000598907 MTHFSP49914 203 aa19.02■□□□□ 0.64
SHKBP1-218ENST00000598907 GRM1Q13255 1194 aa19.02■□□□□ 0.64
SHKBP1-218ENST00000598907 CCDC24Q8N4L8 307 aa19.02■□□□□ 0.64
SHKBP1-218ENST00000598907 BCL2L12Q9HB09 334 aa19.02■□□□□ 0.64
SHKBP1-218ENST00000598907 NARFQ9UHQ1 456 aa19.02■□□□□ 0.64
SHKBP1-218ENST00000598907 PLEKHO1Q53GL0 409 aaPredicted RBP19.01■□□□□ 0.63
SHKBP1-218ENST00000598907 PAXIP1Q6ZW49 1069 aaPredicted RBP19.01■□□□□ 0.63
SHKBP1-218ENST00000598907 CARD14Q9BXL6 1004 aa19.01■□□□□ 0.63
SHKBP1-218ENST00000598907 TSKSQ9UJT2 592 aa19.01■□□□□ 0.63
SHKBP1-218ENST00000598907 THSD7BQ9C0I4 1608 aa19■□□□□ 0.63
SHKBP1-218ENST00000598907 TNNT2P45379 298 aaPredicted RBP18.99■□□□□ 0.63
SHKBP1-218ENST00000598907 C1orf141Q5JVX7 400 aa18.99■□□□□ 0.63
SHKBP1-218ENST00000598907 MAP1SQ66K74 1059 aaPredicted RBP18.99■□□□□ 0.63
SHKBP1-218ENST00000598907 POLKQ9UBT6 870 aa18.99■□□□□ 0.63
SHKBP1-218ENST00000598907 ZBTB1Q9Y2K1 713 aa18.99■□□□□ 0.63
SHKBP1-218ENST00000598907 LTBP3Q9NS15 1303 aa18.99■□□□□ 0.63
SHKBP1-218ENST00000598907 ADAMTSL1Q8N6G6 1762 aa18.98■□□□□ 0.63
SHKBP1-218ENST00000598907 BEGAINQ9BUH8 593 aa18.98■□□□□ 0.63
SHKBP1-218ENST00000598907 SLC24A1O60721 1099 aa18.97■□□□□ 0.63
SHKBP1-218ENST00000598907 L3MBTL3Q96JM7 780 aaPredicted RBP18.97■□□□□ 0.63
SHKBP1-218ENST00000598907 ZNF541Q9H0D2 1346 aa18.97■□□□□ 0.63
SHKBP1-218ENST00000598907 SLX4Q8IY92 1834 aa18.96■□□□□ 0.63
SHKBP1-218ENST00000598907 CYP19A1P11511 503 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-218ENST00000598907 HACL1Q9UJ83 578 aa18.96■□□□□ 0.63
SHKBP1-218ENST00000598907 LTBP1Q14766 1721 aa18.95■□□□□ 0.62
SHKBP1-218ENST00000598907 ZNF316A6NFI3 1004 aaPredicted RBP18.95■□□□□ 0.62
SHKBP1-218ENST00000598907 EPHX2P34913 555 aa18.95■□□□□ 0.62
SHKBP1-218ENST00000598907 PDE6BP35913 854 aa18.95■□□□□ 0.62
SHKBP1-218ENST00000598907 CNTROBQ8N137 903 aa18.95■□□□□ 0.62
SHKBP1-218ENST00000598907 SCN11AQ9UI33 1791 aa18.95■□□□□ 0.62
SHKBP1-218ENST00000598907 RNF123Q5XPI4 1314 aa18.95■□□□□ 0.62
SHKBP1-218ENST00000598907 TNRC18O15417 2968 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-218ENST00000598907 CANXP27824 592 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-218ENST00000598907 AMOTQ4VCS5 1084 aa18.94■□□□□ 0.62
SHKBP1-218ENST00000598907 PRPF40BQ6NWY9 871 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-218ENST00000598907 AEBP1Q8IUX7 1158 aa18.94■□□□□ 0.62
SHKBP1-218ENST00000598907 CAPNS2Q96L46 248 aa18.94■□□□□ 0.62
SHKBP1-218ENST00000598907 MCOLN1Q9GZU1 580 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms