RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 THRAP3Q9Y2W1 955 aaKnown RBP21.33■■□□□ 1.01
SHKBP1-216ENST00000598201 ANXA1P04083 346 aa21.33■■□□□ 1
SHKBP1-216ENST00000598201 RBM6P78332 1123 aaKnown RBP21.33■■□□□ 1
SHKBP1-216ENST00000598201 SLC52A2Q9HAB3 445 aa21.33■■□□□ 1
SHKBP1-216ENST00000598201 ZBTB47Q9UFB7 747 aaPredicted RBP21.33■■□□□ 1
SHKBP1-216ENST00000598201 SCN11AQ9UI33 1791 aa21.32■■□□□ 1
SHKBP1-216ENST00000598201 RXRBP28702 533 aa21.32■■□□□ 1
SHKBP1-216ENST00000598201 PLEKHG2Q9H7P9 1386 aa21.32■■□□□ 1
SHKBP1-216ENST00000598201 SLC39A6Q13433 755 aa21.31■■□□□ 1
SHKBP1-216ENST00000598201 FAM98CQ17RN3 349 aaKnown RBP21.31■■□□□ 1
SHKBP1-216ENST00000598201 ERICH6Q7L0X2 663 aa21.31■■□□□ 1
SHKBP1-216ENST00000598201 PKD1L3Q7Z443 1732 aa21.31■■□□□ 1
SHKBP1-216ENST00000598201 NFATC2IPQ8NCF5 419 aa21.31■■□□□ 1
SHKBP1-216ENST00000598201 BARGINQ6ZT62 677 aa21.3■■□□□ 1
SHKBP1-216ENST00000598201 GLI3P10071 1580 aa21.3■■□□□ 1
SHKBP1-216ENST00000598201 PXDNLA1KZ92 1463 aa21.3■■□□□ 1
SHKBP1-216ENST00000598201 ANP32EQ9BTT0 268 aa21.3■■□□□ 1
SHKBP1-216ENST00000598201 ZNF790Q6PG37 636 aa21.29■■□□□ 1
SHKBP1-216ENST00000598201 CHMP4AQ9BY43 222 aa21.29■■□□□ 1
SHKBP1-216ENST00000598201 GNAI2P04899 355 aa21.28■■□□□ 1
SHKBP1-216ENST00000598201 PROSER3Q2NL68 480 aa21.28■■□□□ 1
SHKBP1-216ENST00000598201 DCAF5Q96JK2 942 aa21.28■■□□□ 1
SHKBP1-216ENST00000598201 DBF4Q9UBU7 674 aaPredicted RBP21.28■■□□□ 1
SHKBP1-216ENST00000598201 N4BP2Q86UW6 1770 aaPredicted RBP21.28■■□□□ 1
SHKBP1-216ENST00000598201 IL2RBP14784 551 aa21.27■■□□□ 1
SHKBP1-216ENST00000598201 USP44Q9H0E7 712 aa21.27■■□□□ 1
SHKBP1-216ENST00000598201 ONECUT3O60422 494 aaPredicted RBP21.27■□□□□ 0.99
SHKBP1-216ENST00000598201 GNAI3P08754 354 aa21.27■□□□□ 0.99
SHKBP1-216ENST00000598201 PI4KAP2A4QPH2 592 aa21.26■□□□□ 0.99
SHKBP1-216ENST00000598201 PI4KAP1Q8N8J0 262 aa21.26■□□□□ 0.99
SHKBP1-216ENST00000598201 MRC1P22897 1456 aa21.26■□□□□ 0.99
SHKBP1-216ENST00000598201 A0A0G2JS52 829 aa21.25■□□□□ 0.99
SHKBP1-216ENST00000598201 DDRGK1Q96HY6 314 aa21.25■□□□□ 0.99
SHKBP1-216ENST00000598201 CDCA7Q9BWT1 371 aaPredicted RBP21.25■□□□□ 0.99
SHKBP1-216ENST00000598201 ADCY9O60503 1353 aa21.25■□□□□ 0.99
SHKBP1-216ENST00000598201 DNAAF4Q8WXU2 420 aa21.24■□□□□ 0.99
SHKBP1-216ENST00000598201 BEND3Q5T5X7 828 aa21.24■□□□□ 0.99
SHKBP1-216ENST00000598201 ZCRB1Q8TBF4 217 aaKnown RBP21.24■□□□□ 0.99
SHKBP1-216ENST00000598201 SRCIN1Q9C0H9 1055 aa21.24■□□□□ 0.99
SHKBP1-216ENST00000598201 LRRFIP2Q9Y608 721 aaKnown RBP21.24■□□□□ 0.99
SHKBP1-216ENST00000598201 DISP2A7MBM2 1401 aa21.23■□□□□ 0.99
SHKBP1-216ENST00000598201 HMMRO75330 724 aa21.23■□□□□ 0.99
SHKBP1-216ENST00000598201 HSP90AB1P08238 724 aaKnown RBP21.23■□□□□ 0.99
SHKBP1-216ENST00000598201 BMP2KLQ5H9B9 411 aa21.23■□□□□ 0.99
SHKBP1-216ENST00000598201 SEPT12Q8IYM1 358 aa21.23■□□□□ 0.99
SHKBP1-216ENST00000598201 C16orf71Q8IYS4 520 aaPredicted RBP21.23■□□□□ 0.99
SHKBP1-216ENST00000598201 ZNF496Q96IT1 587 aaPredicted RBP21.23■□□□□ 0.99
SHKBP1-216ENST00000598201 PARP4Q9UKK3 1724 aaKnown RBP21.23■□□□□ 0.99
SHKBP1-216ENST00000598201 APBB1O00213 710 aa21.22■□□□□ 0.99
SHKBP1-216ENST00000598201 PDIA6Q15084 440 aa21.22■□□□□ 0.99
SHKBP1-216ENST00000598201 PLEKHM2Q8IWE5 1019 aa21.22■□□□□ 0.99
SHKBP1-216ENST00000598201 PNMA6EA0A0J9YXQ4 647 aa21.22■□□□□ 0.99
SHKBP1-216ENST00000598201 SMARCA5O60264 1052 aaPredicted RBP21.22■□□□□ 0.99
SHKBP1-216ENST00000598201 C5P01031 1676 aa21.21■□□□□ 0.99
SHKBP1-216ENST00000598201 EXOC5O00471 708 aa21.2■□□□□ 0.99
SHKBP1-216ENST00000598201 UBTFL1P0CB47 393 aaPredicted RBP21.2■□□□□ 0.99
SHKBP1-216ENST00000598201 CABP4P57796 275 aa21.2■□□□□ 0.99
SHKBP1-216ENST00000598201 ATP8B2P98198 1209 aa21.2■□□□□ 0.99
SHKBP1-216ENST00000598201 DDB1Q16531 1140 aa21.2■□□□□ 0.99
SHKBP1-216ENST00000598201 OTUD7AQ8TE49 926 aaPredicted RBP21.2■□□□□ 0.99
SHKBP1-216ENST00000598201 PCDH11XQ9BZA7 1347 aa21.2■□□□□ 0.98
SHKBP1-216ENST00000598201 PCDH11YQ9BZA8 1340 aa21.2■□□□□ 0.98
SHKBP1-216ENST00000598201 DDX21Q9NR30 783 aaKnown RBP eCLIP21.2■□□□□ 0.98
SHKBP1-216ENST00000598201 SLC4A3P48751 1232 aa21.19■□□□□ 0.98
SHKBP1-216ENST00000598201 TBC1D32Q96NH3 1257 aa21.19■□□□□ 0.98
SHKBP1-216ENST00000598201 HYPKQ9NX55 129 aa21.19■□□□□ 0.98
SHKBP1-216ENST00000598201 MAP3K2Q9Y2U5 619 aa21.19■□□□□ 0.98
SHKBP1-216ENST00000598201 WNK3Q9BYP7 1800 aa21.19■□□□□ 0.98
SHKBP1-216ENST00000598201 THSD7AQ9UPZ6 1657 aa21.18■□□□□ 0.98
SHKBP1-216ENST00000598201 NBPF7P0C2Y1 421 aaPredicted RBP21.18■□□□□ 0.98
SHKBP1-216ENST00000598201 KSR2Q6VAB6 950 aa21.18■□□□□ 0.98
SHKBP1-216ENST00000598201 TTC5Q8N0Z6 440 aa21.18■□□□□ 0.98
SHKBP1-216ENST00000598201 UPF2Q9HAU5 1272 aaKnown RBP21.18■□□□□ 0.98
SHKBP1-216ENST00000598201 EXOC6BQ9Y2D4 811 aa21.18■□□□□ 0.98
SHKBP1-216ENST00000598201 MFAP1P55081 439 aaKnown RBP21.17■□□□□ 0.98
SHKBP1-216ENST00000598201 GSPT1P15170 499 aaKnown RBP21.17■□□□□ 0.98
SHKBP1-216ENST00000598201 USP16Q9Y5T5 823 aa21.17■□□□□ 0.98
SHKBP1-216ENST00000598201 SNRPA1P09661 255 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-216ENST00000598201 AIMP1Q12904 312 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-216ENST00000598201 DDX54Q8TDD1 881 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-216ENST00000598201 FMNL2Q96PY5 1086 aa21.16■□□□□ 0.98
SHKBP1-216ENST00000598201 SHANK3Q9BYB0 1731 aa21.15■□□□□ 0.98
SHKBP1-216ENST00000598201 NKX1-1Q15270 411 aaPredicted RBP21.15■□□□□ 0.98
SHKBP1-216ENST00000598201 MYL6BP14649 208 aa21.14■□□□□ 0.98
SHKBP1-216ENST00000598201 TNS2Q63HR2 1409 aa21.13■□□□□ 0.97
SHKBP1-216ENST00000598201 CWF19L2Q2TBE0 894 aaKnown RBP21.13■□□□□ 0.97
SHKBP1-216ENST00000598201 TTC22Q5TAA0 569 aa21.13■□□□□ 0.97
SHKBP1-216ENST00000598201 SSH3Q8TE77 659 aa21.13■□□□□ 0.97
SHKBP1-216ENST00000598201 ERVV-2B6SEH9 535 aa21.13■□□□□ 0.97
SHKBP1-216ENST00000598201 PIP4K2AP48426 406 aaPredicted RBP21.13■□□□□ 0.97
SHKBP1-216ENST00000598201 KRT27Q7Z3Y8 459 aa21.13■□□□□ 0.97
SHKBP1-216ENST00000598201 LRP10Q7Z4F1 713 aa21.13■□□□□ 0.97
SHKBP1-216ENST00000598201 PPP1R42Q7Z4L9 355 aa21.13■□□□□ 0.97
SHKBP1-216ENST00000598201 IBTKQ9P2D0 1353 aaPredicted RBP21.12■□□□□ 0.97
SHKBP1-216ENST00000598201 ALDH1L1O75891 902 aa21.12■□□□□ 0.97
SHKBP1-216ENST00000598201 TBC1D9Q6ZT07 1266 aa21.11■□□□□ 0.97
SHKBP1-216ENST00000598201 MARCH10Q8NA82 808 aaPredicted RBP21.11■□□□□ 0.97
SHKBP1-216ENST00000598201 XAGE3Q8WTP9 111 aa21.11■□□□□ 0.97
SHKBP1-216ENST00000598201 C22orf23Q9BZE7 217 aa21.11■□□□□ 0.97
SHKBP1-216ENST00000598201 DDX58O95786 925 aaKnown RBP21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms