RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 RSPH6AQ9H0K4 717 aa12.51□□□□□ -0.41
TRIM28-208ENST00000597172 CUL9Q8IWT3 2517 aa12.51□□□□□ -0.41
TRIM28-208ENST00000597172 VIRMAQ69YN4 1812 aaKnown RBP12.51□□□□□ -0.41
TRIM28-208ENST00000597172 GNPATO15228 680 aa12.5□□□□□ -0.41
TRIM28-208ENST00000597172 RASSF7Q02833 373 aa12.5□□□□□ -0.41
TRIM28-208ENST00000597172 SULT6B1Q6IMI4 303 aa12.5□□□□□ -0.41
TRIM28-208ENST00000597172 MPRIPQ6WCQ1 1025 aa12.5□□□□□ -0.41
TRIM28-208ENST00000597172 TMEM88BA6NKF7 163 aa12.49□□□□□ -0.41
TRIM28-208ENST00000597172 DPY19L2Q6NUT2 758 aa12.49□□□□□ -0.41
TRIM28-208ENST00000597172 USHBP1Q8N6Y0 703 aa12.49□□□□□ -0.41
TRIM28-208ENST00000597172 LINC00116Q8NCU8 138 aa12.49□□□□□ -0.41
TRIM28-208ENST00000597172 PARP3Q9Y6F1 533 aa12.49□□□□□ -0.41
TRIM28-208ENST00000597172 KDM6AO15550 1401 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-208ENST00000597172 KDRP35968 1356 aa12.48□□□□□ -0.41
TRIM28-208ENST00000597172 PASKQ96RG2 1323 aa12.48□□□□□ -0.41
TRIM28-208ENST00000597172 RUNDC1Q96C34 613 aa12.48□□□□□ -0.41
TRIM28-208ENST00000597172 PHACTR3Q96KR7 559 aa12.48□□□□□ -0.41
TRIM28-208ENST00000597172 YTHDC1Q96MU7 727 aaKnown RBP12.48□□□□□ -0.41
TRIM28-208ENST00000597172 MCOLN1Q9GZU1 580 aa12.48□□□□□ -0.41
TRIM28-208ENST00000597172 APAF1O14727 1248 aa12.47□□□□□ -0.41
TRIM28-208ENST00000597172 POTEIP0CG38 1075 aa12.47□□□□□ -0.41
TRIM28-208ENST00000597172 POTEJP0CG39 1038 aa12.47□□□□□ -0.41
TRIM28-208ENST00000597172 PRKAR2BP31323 418 aa12.47□□□□□ -0.41
TRIM28-208ENST00000597172 DEFB115Q30KQ5 88 aa12.47□□□□□ -0.41
TRIM28-208ENST00000597172 NCAPD2Q15021 1401 aa12.46□□□□□ -0.41
TRIM28-208ENST00000597172 TRAPPC3LQ5T215 181 aa12.46□□□□□ -0.41
TRIM28-208ENST00000597172 BEGAINQ9BUH8 593 aa12.46□□□□□ -0.41
TRIM28-208ENST00000597172 PNNQ9H307 717 aaKnown RBP12.46□□□□□ -0.41
TRIM28-208ENST00000597172 WDR33Q9C0J8 1336 aaKnown RBP12.45□□□□□ -0.42
TRIM28-208ENST00000597172 LOC102724428A0A0B4J2F2 783 aa12.45□□□□□ -0.42
TRIM28-208ENST00000597172 CHRNA5P30532 468 aa12.45□□□□□ -0.42
TRIM28-208ENST00000597172 SIK1P57059 783 aa12.45□□□□□ -0.42
TRIM28-208ENST00000597172 HNRNPUQ00839 825 aaKnown RBP eCLIP12.45□□□□□ -0.42
TRIM28-208ENST00000597172 RGPD2P0DJD1 1756 aa12.44□□□□□ -0.42
TRIM28-208ENST00000597172 RASSF10A6NK89 507 aa12.44□□□□□ -0.42
TRIM28-208ENST00000597172 C4AP0C0L4 1744 aa12.43□□□□□ -0.42
TRIM28-208ENST00000597172 TMPOP42166 694 aaKnown RBP12.43□□□□□ -0.42
TRIM28-208ENST00000597172 CASP8AP2Q9UKL3 1982 aa12.43□□□□□ -0.42
TRIM28-208ENST00000597172 MEGF6O75095 1541 aa12.42□□□□□ -0.42
TRIM28-208ENST00000597172 CCDC88AQ3V6T2 1871 aa12.42□□□□□ -0.42
TRIM28-208ENST00000597172 GYS1P13807 737 aa12.42□□□□□ -0.42
TRIM28-208ENST00000597172 ITPK1Q13572 414 aa12.42□□□□□ -0.42
TRIM28-208ENST00000597172 MTHFSDQ2M296 383 aaKnown RBP12.42□□□□□ -0.42
TRIM28-208ENST00000597172 PIGBQ92521 554 aa12.42□□□□□ -0.42
TRIM28-208ENST00000597172 RRP7AQ9Y3A4 280 aaKnown RBP12.42□□□□□ -0.42
TRIM28-208ENST00000597172 RTCBQ9Y3I0 505 aaKnown RBP12.42□□□□□ -0.42
TRIM28-208ENST00000597172 SALL2Q9Y467 1007 aaPredicted RBP12.42□□□□□ -0.42
TRIM28-208ENST00000597172 FAM208AQ9UK61 1670 aaKnown RBP12.42□□□□□ -0.42
TRIM28-208ENST00000597172 ITGBL1O95965 494 aaPredicted RBP12.41□□□□□ -0.42
TRIM28-208ENST00000597172 NFE2L2Q16236 605 aa12.41□□□□□ -0.42
TRIM28-208ENST00000597172 NCBP3Q53F19 620 aaKnown RBP12.41□□□□□ -0.42
TRIM28-208ENST00000597172 LDHDQ86WU2 507 aa12.41□□□□□ -0.42
TRIM28-208ENST00000597172 ARHGEF1Q92888 912 aaKnown RBP12.41□□□□□ -0.42
TRIM28-208ENST00000597172 TSKSQ9UJT2 592 aa12.41□□□□□ -0.42
TRIM28-208ENST00000597172 MAPK8IP3Q9UPT6 1336 aa12.4□□□□□ -0.42
TRIM28-208ENST00000597172 RFC4P35249 363 aa12.4□□□□□ -0.42
TRIM28-208ENST00000597172 ATP6V1AP38606 617 aa12.4□□□□□ -0.42
TRIM28-208ENST00000597172 RIPK4P57078 832 aa12.4□□□□□ -0.42
TRIM28-208ENST00000597172 DGKZQ13574 1117 aa12.4□□□□□ -0.42
TRIM28-208ENST00000597172 NEUROD2Q15784 382 aa12.4□□□□□ -0.42
TRIM28-208ENST00000597172 TRIM35Q9UPQ4 493 aa12.4□□□□□ -0.42
TRIM28-208ENST00000597172 NEFMP07197 916 aa12.39□□□□□ -0.43
TRIM28-208ENST00000597172 TATP17735 454 aaPredicted RBP12.39□□□□□ -0.43
TRIM28-208ENST00000597172 SOX10P56693 466 aa12.39□□□□□ -0.43
TRIM28-208ENST00000597172 RAPGEF4Q8WZA2 1011 aa12.39□□□□□ -0.43
TRIM28-208ENST00000597172 GCC1Q96CN9 775 aa12.39□□□□□ -0.43
TRIM28-208ENST00000597172 ABT1Q9ULW3 272 aaKnown RBP12.39□□□□□ -0.43
TRIM28-208ENST00000597172 ZNF521Q96K83 1311 aa12.38□□□□□ -0.43
TRIM28-208ENST00000597172 ADRA2BP18089 450 aa12.38□□□□□ -0.43
TRIM28-208ENST00000597172 CCDC27Q2M243 656 aa12.38□□□□□ -0.43
TRIM28-208ENST00000597172 PLEKHO1Q53GL0 409 aaPredicted RBP12.38□□□□□ -0.43
TRIM28-208ENST00000597172 WWC1Q8IX03 1113 aa12.38□□□□□ -0.43
TRIM28-208ENST00000597172 NGEFQ8N5V2 710 aa12.38□□□□□ -0.43
TRIM28-208ENST00000597172 ZNF219Q9P2Y4 722 aaPredicted RBP12.38□□□□□ -0.43
TRIM28-208ENST00000597172 ZBED9Q6R2W3 1325 aa12.37□□□□□ -0.43
TRIM28-208ENST00000597172 PCDH11XQ9BZA7 1347 aa12.37□□□□□ -0.43
TRIM28-208ENST00000597172 PCDH11YQ9BZA8 1340 aa12.37□□□□□ -0.43
TRIM28-208ENST00000597172 TIAM2Q8IVF5 1701 aa12.37□□□□□ -0.43
TRIM28-208ENST00000597172 NFKBIEO00221 500 aa12.37□□□□□ -0.43
TRIM28-208ENST00000597172 DDNO94850 711 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-208ENST00000597172 ERFEQ4G0M1 354 aa12.37□□□□□ -0.43
TRIM28-208ENST00000597172 AMOTQ4VCS5 1084 aa12.37□□□□□ -0.43
TRIM28-208ENST00000597172 GPR101Q96P66 508 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-208ENST00000597172 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.37□□□□□ -0.43
TRIM28-208ENST00000597172 IQCA1LA6NCM1 817 aa12.36□□□□□ -0.43
TRIM28-208ENST00000597172 CYP27B1O15528 508 aa12.36□□□□□ -0.43
TRIM28-208ENST00000597172 GAS2L2Q8NHY3 880 aa12.36□□□□□ -0.43
TRIM28-208ENST00000597172 CAPNS2Q96L46 248 aa12.36□□□□□ -0.43
TRIM28-208ENST00000597172 ITGB4P16144 1822 aa12.36□□□□□ -0.43
TRIM28-208ENST00000597172 ECE1P42892 770 aa12.35□□□□□ -0.43
TRIM28-208ENST00000597172 DDR1Q08345 913 aa12.35□□□□□ -0.43
TRIM28-208ENST00000597172 ZNF530Q6P9A1 599 aaPredicted RBP12.35□□□□□ -0.43
TRIM28-208ENST00000597172 PAXIP1Q6ZW49 1069 aaPredicted RBP12.35□□□□□ -0.43
TRIM28-208ENST00000597172 TTLL6Q8N841 843 aa12.35□□□□□ -0.43
TRIM28-208ENST00000597172 TAF1DQ9H5J8 278 aaPredicted RBP12.35□□□□□ -0.43
TRIM28-208ENST00000597172 ASAP1Q9ULH1 1129 aa12.35□□□□□ -0.43
TRIM28-208ENST00000597172 SPG7Q9UQ90 795 aa12.35□□□□□ -0.43
TRIM28-208ENST00000597172 CLEC11AQ9Y240 323 aa12.35□□□□□ -0.43
TRIM28-208ENST00000597172 GRM1Q13255 1194 aa12.34□□□□□ -0.43
TRIM28-208ENST00000597172 DCTN1Q14203 1278 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms