RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, human

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-210	ENST00000595874	DPEP1	P16444	411 aa		13.74	□□□□□ -0.21
SHKBP1-210	ENST00000595874	BCS1L	Q9Y276	419 aa		13.74	□□□□□ -0.21
SHKBP1-210	ENST00000595874	COL15A1	P39059	1388 aa		13.73	□□□□□ -0.21
SHKBP1-210	ENST00000595874	ADRA2B	P18089	450 aa		13.73	□□□□□ -0.21
SHKBP1-210	ENST00000595874	ZNF790	Q6PG37	636 aa		13.73	□□□□□ -0.21
SHKBP1-210	ENST00000595874	CCDC24	Q8N4L8	307 aa		13.73	□□□□□ -0.21
SHKBP1-210	ENST00000595874	RTF1	Q92541	710 aa	Known RBP	13.73	□□□□□ -0.21
SHKBP1-210	ENST00000595874	THUMPD2	Q9BTF0	503 aa	Known RBP	13.73	□□□□□ -0.21
SHKBP1-210	ENST00000595874	PXDNL	A1KZ92	1463 aa		13.73	□□□□□ -0.21
SHKBP1-210	ENST00000595874	GRIN3B	O60391	1043 aa		13.72	□□□□□ -0.21
SHKBP1-210	ENST00000595874	A1BG	P04217	495 aa		13.72	□□□□□ -0.21
SHKBP1-210	ENST00000595874	CHRNA5	P30532	468 aa		13.72	□□□□□ -0.21
SHKBP1-210	ENST00000595874	TBC1D2B	Q9UPU7	963 aa		13.72	□□□□□ -0.21
SHKBP1-210	ENST00000595874	KIAA1551	Q9HCM1	1747 aa		13.72	□□□□□ -0.21
SHKBP1-210	ENST00000595874	HEG1	Q9ULI3	1381 aa		13.71	□□□□□ -0.21
SHKBP1-210	ENST00000595874	C10orf71	Q711Q0	1435 aa		13.71	□□□□□ -0.22
SHKBP1-210	ENST00000595874	DLG5	Q8TDM6	1919 aa		13.7	□□□□□ -0.22
SHKBP1-210	ENST00000595874	FCHSD2	O94868	740 aa		13.7	□□□□□ -0.22
SHKBP1-210	ENST00000595874	FMNL2	Q96PY5	1086 aa		13.7	□□□□□ -0.22
SHKBP1-210	ENST00000595874	BCL2L12	Q9HB09	334 aa		13.7	□□□□□ -0.22
SHKBP1-210	ENST00000595874	USP16	Q9Y5T5	823 aa		13.7	□□□□□ -0.22
SHKBP1-210	ENST00000595874	POLRMT	O00411	1230 aa	Known RBP	13.69	□□□□□ -0.22
SHKBP1-210	ENST00000595874	STARD3NL	O95772	234 aa		13.69	□□□□□ -0.22
SHKBP1-210	ENST00000595874	NEFM	P07197	916 aa		13.69	□□□□□ -0.22
SHKBP1-210	ENST00000595874	NFIX	Q14938	502 aa		13.69	□□□□□ -0.22
SHKBP1-210	ENST00000595874	ARHGAP27	Q6ZUM4	889 aa		13.69	□□□□□ -0.22
SHKBP1-210	ENST00000595874	CCDC146	Q8IYE0	955 aa		13.69	□□□□□ -0.22
SHKBP1-210	ENST00000595874	NGEF	Q8N5V2	710 aa		13.69	□□□□□ -0.22
SHKBP1-210	ENST00000595874	KIF13B	Q9NQT8	1826 aa		13.69	□□□□□ -0.22
SHKBP1-210	ENST00000595874	SENP3-EIF4A1	A0A087X0R7	540 aa		13.68	□□□□□ -0.22
SHKBP1-210	ENST00000595874	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.68	□□□□□ -0.22
SHKBP1-210	ENST00000595874	NARF	Q9UHQ1	456 aa		13.68	□□□□□ -0.22
SHKBP1-210	ENST00000595874	RRP7A	Q9Y3A4	280 aa	Known RBP	13.68	□□□□□ -0.22
SHKBP1-210	ENST00000595874	AFDN	P55196	1824 aa	Known RBP	13.68	□□□□□ -0.22
SHKBP1-210	ENST00000595874	CEMIP	Q8WUJ3	1361 aa		13.68	□□□□□ -0.22
SHKBP1-210	ENST00000595874	ATP10D	Q9P241	1426 aa		13.67	□□□□□ -0.22
SHKBP1-210	ENST00000595874	SERPINB2	P05120	415 aa		13.67	□□□□□ -0.22
SHKBP1-210	ENST00000595874	TM4SF1	P30408	202 aa		13.67	□□□□□ -0.22
SHKBP1-210	ENST00000595874	NEUROD2	Q15784	382 aa		13.67	□□□□□ -0.22
SHKBP1-210	ENST00000595874	TBC1D9B	Q66K14	1250 aa		13.67	□□□□□ -0.22
SHKBP1-210	ENST00000595874	VSIG10	Q8N0Z9	540 aa		13.67	□□□□□ -0.22
SHKBP1-210	ENST00000595874	MAPK8IP3	Q9UPT6	1336 aa		13.66	□□□□□ -0.22
SHKBP1-210	ENST00000595874	FAM177B	A6PVY3	158 aa		13.66	□□□□□ -0.22
SHKBP1-210	ENST00000595874	TGFB2	P61812	414 aa		13.66	□□□□□ -0.22
SHKBP1-210	ENST00000595874	PLEKHF1	Q96S99	279 aa		13.66	□□□□□ -0.22
SHKBP1-210	ENST00000595874	CARMIL3	Q8ND23	1372 aa		13.66	□□□□□ -0.22
SHKBP1-210	ENST00000595874	GIGYF1	O75420	1035 aa	Predicted RBP	13.65	□□□□□ -0.22
SHKBP1-210	ENST00000595874	KCNA3	P22001	575 aa		13.65	□□□□□ -0.22
SHKBP1-210	ENST00000595874	EIF5	P55010	431 aa	Known RBP	13.65	□□□□□ -0.22
SHKBP1-210	ENST00000595874	NFE2L2	Q16236	605 aa		13.65	□□□□□ -0.22
SHKBP1-210	ENST00000595874	NPM2	Q86SE8	214 aa	Known RBP	13.65	□□□□□ -0.22
SHKBP1-210	ENST00000595874	NPHP1	O15259	732 aa		13.64	□□□□□ -0.23
SHKBP1-210	ENST00000595874	TAF7	Q15545	349 aa	Predicted RBP	13.64	□□□□□ -0.23
SHKBP1-210	ENST00000595874	DZIP3	Q86Y13	1208 aa	Known RBP	13.64	□□□□□ -0.23
SHKBP1-210	ENST00000595874		A0A087WZG4	1122 aa		13.63	□□□□□ -0.23
SHKBP1-210	ENST00000595874	RALBP1	Q15311	655 aa		13.63	□□□□□ -0.23
SHKBP1-210	ENST00000595874	C2CD5	Q86YS7	1000 aa		13.63	□□□□□ -0.23
SHKBP1-210	ENST00000595874	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.63	□□□□□ -0.23
SHKBP1-210	ENST00000595874	PIM2	Q9P1W9	311 aa		13.63	□□□□□ -0.23
SHKBP1-210	ENST00000595874	BRCA1	P38398	1863 aa	Known RBP	13.63	□□□□□ -0.23
SHKBP1-210	ENST00000595874	SCN7A	Q01118	1682 aa		13.63	□□□□□ -0.23
SHKBP1-210	ENST00000595874	CAMTA2	O94983	1202 aa		13.62	□□□□□ -0.23
SHKBP1-210	ENST00000595874	SNRPA1	P09661	255 aa	Known RBP	13.62	□□□□□ -0.23
SHKBP1-210	ENST00000595874	MYL6B	P14649	208 aa		13.62	□□□□□ -0.23
SHKBP1-210	ENST00000595874	RIPK4	P57078	832 aa		13.62	□□□□□ -0.23
SHKBP1-210	ENST00000595874	RASSF7	Q02833	373 aa		13.62	□□□□□ -0.23
SHKBP1-210	ENST00000595874	NECTIN2	Q92692	538 aa		13.62	□□□□□ -0.23
SHKBP1-210	ENST00000595874	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
SHKBP1-210	ENST00000595874	LAS1L	Q9Y4W2	734 aa	Known RBP	13.62	□□□□□ -0.23
SHKBP1-210	ENST00000595874	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.62	□□□□□ -0.23
SHKBP1-210	ENST00000595874	NBPF26	B4DH59	902 aa		13.61	□□□□□ -0.23
SHKBP1-210	ENST00000595874	IL6ST	P40189	918 aa	Predicted RBP	13.61	□□□□□ -0.23
SHKBP1-210	ENST00000595874	C1QTNF8	P60827	252 aa		13.61	□□□□□ -0.23
SHKBP1-210	ENST00000595874	DALRD3	Q5D0E6	543 aa	Known RBP	13.61	□□□□□ -0.23
SHKBP1-210	ENST00000595874	NBPF10	Q6P3W6	841 aa	Known RBP	13.61	□□□□□ -0.23
SHKBP1-210	ENST00000595874	NBPF15	Q8N660	670 aa		13.61	□□□□□ -0.23
SHKBP1-210	ENST00000595874	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.61	□□□□□ -0.23
SHKBP1-210	ENST00000595874	UTRN	P46939	3433 aa		13.61	□□□□□ -0.23
SHKBP1-210	ENST00000595874	CACNA1S	Q13698	1873 aa		13.6	□□□□□ -0.23
SHKBP1-210	ENST00000595874	WDR43	Q15061	677 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
SHKBP1-210	ENST00000595874	BCOR	Q6W2J9	1755 aa		13.6	□□□□□ -0.23
SHKBP1-210	ENST00000595874	KDM3B	Q7LBC6	1761 aa		13.6	□□□□□ -0.23
SHKBP1-210	ENST00000595874	ANKRD31	Q8N7Z5	1873 aa		13.59	□□□□□ -0.23
SHKBP1-210	ENST00000595874	HTATSF1	O43719	755 aa	Known RBP	13.59	□□□□□ -0.23
SHKBP1-210	ENST00000595874	C9orf131	Q5VYM1	1079 aa		13.59	□□□□□ -0.23
SHKBP1-210	ENST00000595874	PRR5L	Q6MZQ0	368 aa		13.59	□□□□□ -0.23
SHKBP1-210	ENST00000595874	ZNF428	Q96B54	188 aa		13.59	□□□□□ -0.23
SHKBP1-210	ENST00000595874	TSPYL4	Q9UJ04	414 aa		13.59	□□□□□ -0.23
SHKBP1-210	ENST00000595874	NRXN2	Q9P2S2	1712 aa		13.59	□□□□□ -0.23
SHKBP1-210	ENST00000595874	ANXA1	P04083	346 aa		13.58	□□□□□ -0.24
SHKBP1-210	ENST00000595874	EIF2S2	P20042	333 aa	Known RBP	13.58	□□□□□ -0.24
SHKBP1-210	ENST00000595874	TMPO	P42166	694 aa	Known RBP	13.58	□□□□□ -0.24
SHKBP1-210	ENST00000595874	HLF	Q16534	295 aa		13.58	□□□□□ -0.24
SHKBP1-210	ENST00000595874	SETDB2	Q96T68	719 aa		13.58	□□□□□ -0.24
SHKBP1-210	ENST00000595874	RNF181	Q9P0P0	153 aa		13.58	□□□□□ -0.24
SHKBP1-210	ENST00000595874	COL11A2	P13942	1736 aa	Predicted RBP	13.58	□□□□□ -0.24
SHKBP1-210	ENST00000595874	LAMB4	A4D0S4	1761 aa		13.58	□□□□□ -0.24
SHKBP1-210	ENST00000595874	ADCY9	O60503	1353 aa		13.58	□□□□□ -0.24
SHKBP1-210	ENST00000595874	ARFGEF1	Q9Y6D6	1849 aa		13.57	□□□□□ -0.24
SHKBP1-210	ENST00000595874	GOLGB1	Q14789	3259 aa	Known RBP	13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms