RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 CCDC87Q9NVE4 849 aa20.05■□□□□ 0.8
TRIM28-205ENST00000595028 PCNTO95613 3336 aa20.04■□□□□ 0.8
TRIM28-205ENST00000595028 CYP19A1P11511 503 aaPredicted RBP20.04■□□□□ 0.8
TRIM28-205ENST00000595028 INTS5Q6P9B9 1019 aaKnown RBP20.04■□□□□ 0.8
TRIM28-205ENST00000595028 MCM10Q7L590 875 aa20.04■□□□□ 0.8
TRIM28-205ENST00000595028 ZNF496Q96IT1 587 aaPredicted RBP20.04■□□□□ 0.8
TRIM28-205ENST00000595028 HEG1Q9ULI3 1381 aa20.04■□□□□ 0.8
TRIM28-205ENST00000595028 MAPK8IP3Q9UPT6 1336 aa20.03■□□□□ 0.8
TRIM28-205ENST00000595028 COL13A1Q5TAT6 717 aaPredicted RBP20.03■□□□□ 0.8
TRIM28-205ENST00000595028 SOS1Q07889 1333 aaPredicted RBP20.02■□□□□ 0.8
TRIM28-205ENST00000595028 BTBD11A6QL63 1104 aa20.02■□□□□ 0.8
TRIM28-205ENST00000595028 CAPN15O75808 1086 aa20.02■□□□□ 0.8
TRIM28-205ENST00000595028 RFC4P35249 363 aa20.02■□□□□ 0.8
TRIM28-205ENST00000595028 DCTN1Q14203 1278 aa20.02■□□□□ 0.8
TRIM28-205ENST00000595028 PNNQ9H307 717 aaKnown RBP20.02■□□□□ 0.8
TRIM28-205ENST00000595028 KDM3BQ7LBC6 1761 aa20.02■□□□□ 0.8
TRIM28-205ENST00000595028 TOMM70O94826 608 aa20.01■□□□□ 0.79
TRIM28-205ENST00000595028 NFE2L2Q16236 605 aa20.01■□□□□ 0.79
TRIM28-205ENST00000595028 ZBTB1Q9Y2K1 713 aa20.01■□□□□ 0.79
TRIM28-205ENST00000595028 KIF13BQ9NQT8 1826 aa20.01■□□□□ 0.79
TRIM28-205ENST00000595028 USP42Q9H9J4 1324 aaKnown RBP20.01■□□□□ 0.79
TRIM28-205ENST00000595028 COL15A1P39059 1388 aa20■□□□□ 0.79
TRIM28-205ENST00000595028 GYS1P13807 737 aa20■□□□□ 0.79
TRIM28-205ENST00000595028 FMNL2Q96PY5 1086 aa20■□□□□ 0.79
TRIM28-205ENST00000595028 WDR90Q96KV7 1748 aa19.99■□□□□ 0.79
TRIM28-205ENST00000595028 LAMB4A4D0S4 1761 aa19.99■□□□□ 0.79
TRIM28-205ENST00000595028 KCNQ3O43525 872 aa19.99■□□□□ 0.79
TRIM28-205ENST00000595028 MMP10P09238 476 aa19.99■□□□□ 0.79
TRIM28-205ENST00000595028 NLGN1Q8N2Q7 840 aa19.99■□□□□ 0.79
TRIM28-205ENST00000595028 SCN7AQ01118 1682 aa19.98■□□□□ 0.79
TRIM28-205ENST00000595028 STARD3NLO95772 234 aa19.98■□□□□ 0.79
TRIM28-205ENST00000595028 SRP68Q9UHB9 627 aaKnown RBP19.98■□□□□ 0.79
TRIM28-205ENST00000595028 KIAA1551Q9HCM1 1747 aa19.97■□□□□ 0.79
TRIM28-205ENST00000595028 ZNF316A6NFI3 1004 aaPredicted RBP19.97■□□□□ 0.79
TRIM28-205ENST00000595028 TEX13AQ9BXU3 409 aaPredicted RBP19.97■□□□□ 0.79
TRIM28-205ENST00000595028 C10orf71Q711Q0 1435 aa19.96■□□□□ 0.79
TRIM28-205ENST00000595028 WDR43Q15061 677 aaKnown RBP eCLIP19.95■□□□□ 0.78
TRIM28-205ENST00000595028 TAF7Q15545 349 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-205ENST00000595028 CANXP27824 592 aaKnown RBP19.94■□□□□ 0.78
TRIM28-205ENST00000595028 HTRA3P83110 453 aa19.94■□□□□ 0.78
TRIM28-205ENST00000595028 FKBP8Q14318 412 aa19.94■□□□□ 0.78
TRIM28-205ENST00000595028 BCORQ6W2J9 1755 aa19.93■□□□□ 0.78
TRIM28-205ENST00000595028 TNS4Q8IZW8 715 aa19.93■□□□□ 0.78
TRIM28-205ENST00000595028 JMYQ8N9B5 988 aa19.93■□□□□ 0.78
TRIM28-205ENST00000595028 KLRG1Q96E93 195 aa19.93■□□□□ 0.78
TRIM28-205ENST00000595028 THUMPD2Q9BTF0 503 aaKnown RBP19.93■□□□□ 0.78
TRIM28-205ENST00000595028 NMRK2Q9NPI5 230 aa19.93■□□□□ 0.78
TRIM28-205ENST00000595028 NARFQ9UHQ1 456 aa19.93■□□□□ 0.78
TRIM28-205ENST00000595028 ZPR1O75312 459 aa19.92■□□□□ 0.78
TRIM28-205ENST00000595028 PRELPP51888 382 aa19.92■□□□□ 0.78
TRIM28-205ENST00000595028 EIF5P55010 431 aaKnown RBP19.92■□□□□ 0.78
TRIM28-205ENST00000595028 USPL1Q5W0Q7 1092 aa19.92■□□□□ 0.78
TRIM28-205ENST00000595028 PXDNLA1KZ92 1463 aa19.92■□□□□ 0.78
TRIM28-205ENST00000595028 AFDNP55196 1824 aaKnown RBP19.91■□□□□ 0.78
TRIM28-205ENST00000595028 SNRPA1P09661 255 aaKnown RBP19.91■□□□□ 0.78
TRIM28-205ENST00000595028 TMPOP42166 694 aaKnown RBP19.91■□□□□ 0.78
TRIM28-205ENST00000595028 DDR1Q08345 913 aa19.91■□□□□ 0.78
TRIM28-205ENST00000595028 CCDC146Q8IYE0 955 aa19.91■□□□□ 0.78
TRIM28-205ENST00000595028 PNISRQ8TF01 805 aaKnown RBP19.91■□□□□ 0.78
TRIM28-205ENST00000595028 PARP3Q9Y6F1 533 aa19.91■□□□□ 0.78
TRIM28-205ENST00000595028 NRXN2Q9P2S2 1712 aa19.9■□□□□ 0.78
TRIM28-205ENST00000595028 N4BP2Q86UW6 1770 aaPredicted RBP19.9■□□□□ 0.78
TRIM28-205ENST00000595028 A0A087WZG4 1122 aa19.9■□□□□ 0.78
TRIM28-205ENST00000595028 PRAMEF22A3QJZ6 481 aa19.9■□□□□ 0.78
TRIM28-205ENST00000595028 IL6STP40189 918 aaPredicted RBP19.9■□□□□ 0.78
TRIM28-205ENST00000595028 RIPK4P57078 832 aa19.9■□□□□ 0.78
TRIM28-205ENST00000595028 RUNDC1Q96C34 613 aa19.9■□□□□ 0.78
TRIM28-205ENST00000595028 MIS18AQ9NYP9 233 aa19.9■□□□□ 0.78
TRIM28-205ENST00000595028 ADAMTS8Q9UP79 889 aa19.9■□□□□ 0.78
TRIM28-205ENST00000595028 BRCA1P38398 1863 aaKnown RBP19.89■□□□□ 0.77
TRIM28-205ENST00000595028 LMOD3Q0VAK6 560 aa19.89■□□□□ 0.77
TRIM28-205ENST00000595028 RBM46Q8TBY0 533 aaKnown RBP19.89■□□□□ 0.77
TRIM28-205ENST00000595028 A1BGP04217 495 aa19.88■□□□□ 0.77
TRIM28-205ENST00000595028 BCL2L12Q9HB09 334 aa19.88■□□□□ 0.77
TRIM28-205ENST00000595028 RRP7AQ9Y3A4 280 aaKnown RBP19.88■□□□□ 0.77
TRIM28-205ENST00000595028 USP16Q9Y5T5 823 aa19.88■□□□□ 0.77
TRIM28-205ENST00000595028 POLRMTO00411 1230 aaKnown RBP19.87■□□□□ 0.77
TRIM28-205ENST00000595028 ZNF330Q9Y3S2 320 aaPredicted RBP19.87■□□□□ 0.77
TRIM28-205ENST00000595028 TM4SF1P30408 202 aa19.86■□□□□ 0.77
TRIM28-205ENST00000595028 EIF4A1P60842 406 aaKnown RBP19.85■□□□□ 0.77
TRIM28-205ENST00000595028 NFIXQ14938 502 aa19.85■□□□□ 0.77
TRIM28-205ENST00000595028 PIP4K2AP48426 406 aaPredicted RBP19.84■□□□□ 0.77
TRIM28-205ENST00000595028 TGFB2P61812 414 aa19.84■□□□□ 0.77
TRIM28-205ENST00000595028 NPM2Q86SE8 214 aaKnown RBP19.84■□□□□ 0.77
TRIM28-205ENST00000595028 BCS1LQ9Y276 419 aa19.84■□□□□ 0.77
TRIM28-205ENST00000595028 NEUROD2Q15784 382 aa19.83■□□□□ 0.77
TRIM28-205ENST00000595028 ARHGAP27Q6ZUM4 889 aa19.83■□□□□ 0.77
TRIM28-205ENST00000595028 C16orf71Q8IYS4 520 aaPredicted RBP19.83■□□□□ 0.77
TRIM28-205ENST00000595028 TSPYL4Q9UJ04 414 aa19.83■□□□□ 0.77
TRIM28-205ENST00000595028 TBC1D2BQ9UPU7 963 aa19.83■□□□□ 0.77
TRIM28-205ENST00000595028 NBPF26B4DH59 902 aa19.82■□□□□ 0.76
TRIM28-205ENST00000595028 CAMTA2O94983 1202 aa19.82■□□□□ 0.76
TRIM28-205ENST00000595028 FSTL1Q12841 308 aa19.82■□□□□ 0.76
TRIM28-205ENST00000595028 NBPF10Q6P3W6 841 aaKnown RBP19.82■□□□□ 0.76
TRIM28-205ENST00000595028 NBPF15Q8N660 670 aa19.82■□□□□ 0.76
TRIM28-205ENST00000595028 BABAM1Q9NWV8 329 aa19.82■□□□□ 0.76
TRIM28-205ENST00000595028 TRIM35Q9UPQ4 493 aa19.82■□□□□ 0.76
TRIM28-205ENST00000595028 DLEC1Q9Y238 1755 aa19.82■□□□□ 0.76
TRIM28-205ENST00000595028 A0A0G2JLW4 131 aa19.81■□□□□ 0.76
TRIM28-205ENST00000595028 CCDC184Q52MB2 194 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms