RNA–Protein interactions for RNA: ENST00000593912.5

VRK3-204, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 551 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-204ENST00000593912 RBM27Q9P2N5 1060 aaKnown RBP4.68□□□□□ -1.66
VRK3-204ENST00000593912 CCDC61Q9Y6R9 512 aa4.68□□□□□ -1.66
VRK3-204ENST00000593912 CACNA1SQ13698 1873 aa4.68□□□□□ -1.66
VRK3-204ENST00000593912 LAMA2P24043 3122 aaKnown RBP4.68□□□□□ -1.66
VRK3-204ENST00000593912 AFDNP55196 1824 aaKnown RBP4.67□□□□□ -1.66
VRK3-204ENST00000593912 FAM208AQ9UK61 1670 aaKnown RBP4.67□□□□□ -1.66
VRK3-204ENST00000593912 MUC3AQ02505 3323 aa4.67□□□□□ -1.66
VRK3-204ENST00000593912 SOX1O00570 391 aaPredicted RBP4.67□□□□□ -1.66
VRK3-204ENST00000593912 ITGAEP38570 1179 aa4.67□□□□□ -1.66
VRK3-204ENST00000593912 MPRIPQ6WCQ1 1025 aa4.67□□□□□ -1.66
VRK3-204ENST00000593912 LRCH3Q96II8 777 aa4.67□□□□□ -1.66
VRK3-204ENST00000593912 L3MBTL3Q96JM7 780 aaPredicted RBP4.67□□□□□ -1.66
VRK3-204ENST00000593912 AKAP11Q9UKA4 1901 aa4.67□□□□□ -1.66
VRK3-204ENST00000593912 PRUNE2Q8WUY3 3088 aa4.67□□□□□ -1.66
VRK3-204ENST00000593912 RNF123Q5XPI4 1314 aa4.67□□□□□ -1.66
VRK3-204ENST00000593912 ZNF541Q9H0D2 1346 aa4.67□□□□□ -1.66
VRK3-204ENST00000593912 H0YGN5 161 aa4.66□□□□□ -1.66
VRK3-204ENST00000593912 TRPA1O75762 1119 aa4.66□□□□□ -1.66
VRK3-204ENST00000593912 SAPCD2Q86UD0 394 aa4.66□□□□□ -1.66
VRK3-204ENST00000593912 SYNE4Q8N205 404 aa4.66□□□□□ -1.66
VRK3-204ENST00000593912 ZCRB1Q8TBF4 217 aaKnown RBP4.66□□□□□ -1.66
VRK3-204ENST00000593912 ARHGEF1Q92888 912 aaKnown RBP4.66□□□□□ -1.66
VRK3-204ENST00000593912 FAM122AQ96E09 287 aa4.66□□□□□ -1.66
VRK3-204ENST00000593912 SRP68Q9UHB9 627 aaKnown RBP4.66□□□□□ -1.66
VRK3-204ENST00000593912 HACL1Q9UJ83 578 aa4.66□□□□□ -1.66
VRK3-204ENST00000593912 RBBP6Q7Z6E9 1792 aaKnown RBP4.65□□□□□ -1.66
VRK3-204ENST00000593912 LOC102724428A0A0B4J2F2 783 aa4.65□□□□□ -1.67
VRK3-204ENST00000593912 C21orf2O43822 256 aa4.65□□□□□ -1.67
VRK3-204ENST00000593912 SIK1P57059 783 aa4.65□□□□□ -1.67
VRK3-204ENST00000593912 FKBP8Q14318 412 aa4.65□□□□□ -1.67
VRK3-204ENST00000593912 TRAPPC3LQ5T215 181 aa4.65□□□□□ -1.67
VRK3-204ENST00000593912 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.65□□□□□ -1.67
VRK3-204ENST00000593912 TTLL6Q8N841 843 aa4.65□□□□□ -1.67
VRK3-204ENST00000593912 KCNH5Q8NCM2 988 aa4.65□□□□□ -1.67
VRK3-204ENST00000593912 LTV1Q96GA3 475 aaPredicted RBP4.65□□□□□ -1.67
VRK3-204ENST00000593912 RNF186Q9NXI6 227 aa4.65□□□□□ -1.67
VRK3-204ENST00000593912 KIAA0100Q14667 2235 aaKnown RBP4.65□□□□□ -1.67
VRK3-204ENST00000593912 COL11A2P13942 1736 aaPredicted RBP4.64□□□□□ -1.67
VRK3-204ENST00000593912 MYH14Q7Z406 1995 aaKnown RBP4.64□□□□□ -1.67
VRK3-204ENST00000593912 CELF2O95319 508 aaKnown RBP4.64□□□□□ -1.67
VRK3-204ENST00000593912 EN2P19622 333 aaPredicted RBP4.64□□□□□ -1.67
VRK3-204ENST00000593912 Q7L0L9 218 aa4.64□□□□□ -1.67
VRK3-204ENST00000593912 RTCBQ9Y3I0 505 aaKnown RBP4.64□□□□□ -1.67
VRK3-204ENST00000593912 ERBB4Q15303 1308 aa4.64□□□□□ -1.67
VRK3-204ENST00000593912 CARMIL3Q8ND23 1372 aa4.64□□□□□ -1.67
VRK3-204ENST00000593912 COL5A3P25940 1745 aaPredicted RBP4.63□□□□□ -1.67
VRK3-204ENST00000593912 ANKRD31Q8N7Z5 1873 aa4.63□□□□□ -1.67
VRK3-204ENST00000593912 POLRMTO00411 1230 aaKnown RBP4.63□□□□□ -1.67
VRK3-204ENST00000593912 RFC4P35249 363 aa4.63□□□□□ -1.67
VRK3-204ENST00000593912 ATP6V1AP38606 617 aa4.63□□□□□ -1.67
VRK3-204ENST00000593912 NOGQ13253 232 aa4.63□□□□□ -1.67
VRK3-204ENST00000593912 AKAP4Q5JQC9 854 aa4.63□□□□□ -1.67
VRK3-204ENST00000593912 BICDL1Q6ZP65 573 aa4.63□□□□□ -1.67
VRK3-204ENST00000593912 PNMA8AQ86V59 439 aaPredicted RBP4.63□□□□□ -1.67
VRK3-204ENST00000593912 C2CD5Q86YS7 1000 aa4.63□□□□□ -1.67
VRK3-204ENST00000593912 PIGBQ92521 554 aa4.63□□□□□ -1.67
VRK3-204ENST00000593912 SMARCC1Q92922 1105 aaPredicted RBP4.63□□□□□ -1.67
VRK3-204ENST00000593912 TAOK3Q9H2K8 898 aa4.63□□□□□ -1.67
VRK3-204ENST00000593912 ZNF408Q9H9D4 720 aa4.63□□□□□ -1.67
VRK3-204ENST00000593912 CABP2Q9NPB3 220 aa4.63□□□□□ -1.67
VRK3-204ENST00000593912 SAGE1Q9NXZ1 904 aa4.63□□□□□ -1.67
VRK3-204ENST00000593912 NRXN2Q9P2S2 1712 aa4.63□□□□□ -1.67
VRK3-204ENST00000593912 SLX4Q8IY92 1834 aa4.62□□□□□ -1.67
VRK3-204ENST00000593912 SRPK2P78362 688 aaKnown RBP4.62□□□□□ -1.67
VRK3-204ENST00000593912 KIF23Q02241 960 aaPredicted RBP4.62□□□□□ -1.67
VRK3-204ENST00000593912 PKN2Q16513 984 aaKnown RBP4.62□□□□□ -1.67
VRK3-204ENST00000593912 LHX8Q68G74 356 aa4.62□□□□□ -1.67
VRK3-204ENST00000593912 FBXO46Q6PJ61 603 aaPredicted RBP4.62□□□□□ -1.67
VRK3-204ENST00000593912 SLC4A1APQ9BWU0 796 aaKnown RBP4.62□□□□□ -1.67
VRK3-204ENST00000593912 CABP1Q9NZU7 370 aa4.62□□□□□ -1.67
VRK3-204ENST00000593912 HDAC9Q9UKV0 1011 aa4.62□□□□□ -1.67
VRK3-204ENST00000593912 ASAP1Q9ULH1 1129 aa4.62□□□□□ -1.67
VRK3-204ENST00000593912 MON2Q7Z3U7 1717 aa4.62□□□□□ -1.67
VRK3-204ENST00000593912 TTC21BQ7Z4L5 1316 aa4.62□□□□□ -1.67
VRK3-204ENST00000593912 USP31Q70CQ4 1352 aa4.62□□□□□ -1.67
VRK3-204ENST00000593912 TTC28Q96AY4 2481 aa4.61□□□□□ -1.67
VRK3-204ENST00000593912 FAM155AB1AL88 458 aaPredicted RBP4.61□□□□□ -1.67
VRK3-204ENST00000593912 HMGB2P26583 209 aaKnown RBP4.61□□□□□ -1.67
VRK3-204ENST00000593912 DLK2Q6UY11 383 aa4.61□□□□□ -1.67
VRK3-204ENST00000593912 DEFB123Q8N688 67 aa4.61□□□□□ -1.67
VRK3-204ENST00000593912 USHBP1Q8N6Y0 703 aa4.61□□□□□ -1.67
VRK3-204ENST00000593912 ZNF296Q8WUU4 475 aaPredicted RBP4.61□□□□□ -1.67
VRK3-204ENST00000593912 ZNF622Q969S3 477 aaKnown RBP eCLIP4.61□□□□□ -1.67
VRK3-204ENST00000593912 HHIPL1Q96JK4 782 aa4.61□□□□□ -1.67
VRK3-204ENST00000593912 SLC4A9Q96Q91 983 aa4.61□□□□□ -1.67
VRK3-204ENST00000593912 GLIS2Q9BZE0 524 aaPredicted RBP4.61□□□□□ -1.67
VRK3-204ENST00000593912 LTBP3Q9NS15 1303 aa4.61□□□□□ -1.67
VRK3-204ENST00000593912 INSRP06213 1382 aa4.61□□□□□ -1.67
VRK3-204ENST00000593912 BCORQ6W2J9 1755 aa4.6□□□□□ -1.67
VRK3-204ENST00000593912 TMEM265A0A087WTH1 108 aa4.6□□□□□ -1.67
VRK3-204ENST00000593912 TM4SF1P30408 202 aa4.6□□□□□ -1.67
VRK3-204ENST00000593912 EPS15P42566 896 aa4.6□□□□□ -1.67
VRK3-204ENST00000593912 HUNKP57058 714 aa4.6□□□□□ -1.67
VRK3-204ENST00000593912 PRO3102Q9H379 93 aa4.6□□□□□ -1.67
VRK3-204ENST00000593912 ZNF277Q9NRM2 450 aaPredicted RBP4.6□□□□□ -1.67
VRK3-204ENST00000593912 STXBP5LQ9Y2K9 1186 aa4.6□□□□□ -1.67
VRK3-204ENST00000593912 USP42Q9H9J4 1324 aaKnown RBP4.6□□□□□ -1.67
VRK3-204ENST00000593912 H0YIN7 160 aa4.59□□□□□ -1.67
VRK3-204ENST00000593912 CYP27B1O15528 508 aa4.59□□□□□ -1.67
VRK3-204ENST00000593912 RPS6KA4O75676 772 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms