RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 ALDH1L2Q3SY69 923 aa17.32■□□□□ 0.36
VMP1-217ENST00000593168 DCAF5Q96JK2 942 aa17.32■□□□□ 0.36
VMP1-217ENST00000593168 BCAR3O75815 825 aa17.31■□□□□ 0.36
VMP1-217ENST00000593168 NKX1-1Q15270 411 aaPredicted RBP17.31■□□□□ 0.36
VMP1-217ENST00000593168 TWISTNBQ3B726 338 aaPredicted RBP17.31■□□□□ 0.36
VMP1-217ENST00000593168 MSL1Q68DK7 614 aa17.31■□□□□ 0.36
VMP1-217ENST00000593168 C8orf58Q8NAV2 365 aa17.31■□□□□ 0.36
VMP1-217ENST00000593168 MIS18AQ9NYP9 233 aa17.31■□□□□ 0.36
VMP1-217ENST00000593168 GRIN3BO60391 1043 aa17.3■□□□□ 0.36
VMP1-217ENST00000593168 TSPYL6Q8N831 410 aa17.3■□□□□ 0.36
VMP1-217ENST00000593168 CEP350Q5VT06 3117 aa17.3■□□□□ 0.36
VMP1-217ENST00000593168 SOS1Q07889 1333 aaPredicted RBP17.29■□□□□ 0.36
VMP1-217ENST00000593168 VIRMAQ69YN4 1812 aaKnown RBP17.29■□□□□ 0.36
VMP1-217ENST00000593168 IRX6P78412 446 aaPredicted RBP17.29■□□□□ 0.36
VMP1-217ENST00000593168 KDM6AO15550 1401 aaPredicted RBP17.29■□□□□ 0.36
VMP1-217ENST00000593168 SCN11AQ9UI33 1791 aa17.28■□□□□ 0.36
VMP1-217ENST00000593168 BRPF1P55201 1214 aaPredicted RBP17.28■□□□□ 0.36
VMP1-217ENST00000593168 SSH1Q8WYL5 1049 aa17.28■□□□□ 0.36
VMP1-217ENST00000593168 ATP10DQ9P241 1426 aa17.28■□□□□ 0.36
VMP1-217ENST00000593168 ITGB4P16144 1822 aa17.28■□□□□ 0.36
VMP1-217ENST00000593168 TOGARAM1Q9Y4F4 1720 aa17.27■□□□□ 0.36
VMP1-217ENST00000593168 BTBD11A6QL63 1104 aa17.27■□□□□ 0.36
VMP1-217ENST00000593168 PLIN1O60240 522 aa17.27■□□□□ 0.36
VMP1-217ENST00000593168 IFFO2Q5TF58 517 aa17.27■□□□□ 0.36
VMP1-217ENST00000593168 SLC52A2Q9HAB3 445 aa17.27■□□□□ 0.36
VMP1-217ENST00000593168 ELL2O00472 640 aaPredicted RBP17.26■□□□□ 0.35
VMP1-217ENST00000593168 SMC4Q9NTJ3 1288 aa17.26■□□□□ 0.35
VMP1-217ENST00000593168 SIPA1L3O60292 1781 aaPredicted RBP17.25■□□□□ 0.35
VMP1-217ENST00000593168 C4BP0C0L5 1744 aa17.25■□□□□ 0.35
VMP1-217ENST00000593168 ERVV-2B6SEH9 535 aa17.25■□□□□ 0.35
VMP1-217ENST00000593168 PDE3AQ14432 1141 aa17.25■□□□□ 0.35
VMP1-217ENST00000593168 MRC1P22897 1456 aa17.24■□□□□ 0.35
VMP1-217ENST00000593168 UBR3Q6ZT12 1888 aa17.24■□□□□ 0.35
VMP1-217ENST00000593168 EIF4A1P60842 406 aaKnown RBP17.24■□□□□ 0.35
VMP1-217ENST00000593168 KRT24Q2M2I5 525 aa17.24■□□□□ 0.35
VMP1-217ENST00000593168 BCL2L13Q9BXK5 485 aa17.24■□□□□ 0.35
VMP1-217ENST00000593168 KDM3BQ7LBC6 1761 aa17.24■□□□□ 0.35
VMP1-217ENST00000593168 HOXB7P09629 217 aa17.23■□□□□ 0.35
VMP1-217ENST00000593168 CANXP27824 592 aaKnown RBP17.23■□□□□ 0.35
VMP1-217ENST00000593168 MRPL50Q8N5N7 158 aaKnown RBP17.23■□□□□ 0.35
VMP1-217ENST00000593168 NFATC2IPQ8NCF5 419 aa17.23■□□□□ 0.35
VMP1-217ENST00000593168 CHMP4AQ9BY43 222 aa17.23■□□□□ 0.35
VMP1-217ENST00000593168 CD2APQ9Y5K6 639 aa17.23■□□□□ 0.35
VMP1-217ENST00000593168 PALLDQ8WX93 1383 aa17.23■□□□□ 0.35
VMP1-217ENST00000593168 KIF16BQ96L93 1317 aa17.22■□□□□ 0.35
VMP1-217ENST00000593168 IPO8O15397 1037 aaKnown RBP17.22■□□□□ 0.35
VMP1-217ENST00000593168 MS4A1P11836 297 aa17.22■□□□□ 0.35
VMP1-217ENST00000593168 CABP4P57796 275 aa17.22■□□□□ 0.35
VMP1-217ENST00000593168 ZKSCAN2Q63HK3 967 aa17.22■□□□□ 0.35
VMP1-217ENST00000593168 AMIGO3Q86WK7 504 aa17.22■□□□□ 0.35
VMP1-217ENST00000593168 FRAT1Q92837 279 aaPredicted RBP17.22■□□□□ 0.35
VMP1-217ENST00000593168 ADCY9O60503 1353 aa17.22■□□□□ 0.35
VMP1-217ENST00000593168 KCNQ3O43525 872 aa17.21■□□□□ 0.35
VMP1-217ENST00000593168 ARHGAP45Q92619 1136 aa17.21■□□□□ 0.35
VMP1-217ENST00000593168 HEG1Q9ULI3 1381 aa17.2■□□□□ 0.34
VMP1-217ENST00000593168 C20orf194Q5TEA3 1177 aa17.2■□□□□ 0.34
VMP1-217ENST00000593168 ZNF790Q6PG37 636 aa17.2■□□□□ 0.34
VMP1-217ENST00000593168 SMIM5Q71RC9 77 aa17.2■□□□□ 0.34
VMP1-217ENST00000593168 FLAD1Q8NFF5 587 aa17.2■□□□□ 0.34
VMP1-217ENST00000593168 GPBP1L1Q9HC44 474 aaPredicted RBP17.2■□□□□ 0.34
VMP1-217ENST00000593168 PPP4R2Q9NY27 417 aa17.2■□□□□ 0.34
VMP1-217ENST00000593168 NOB1Q9ULX3 412 aaKnown RBP17.2■□□□□ 0.34
VMP1-217ENST00000593168 CCDC30Q5VVM6 783 aa17.18■□□□□ 0.34
VMP1-217ENST00000593168 ATF7IPQ6VMQ6 1270 aa17.18■□□□□ 0.34
VMP1-217ENST00000593168 EXOC6Q8TAG9 804 aa17.18■□□□□ 0.34
VMP1-217ENST00000593168 ZNF526Q8TF50 670 aaPredicted RBP17.18■□□□□ 0.34
VMP1-217ENST00000593168 CRBNQ96SW2 442 aa17.18■□□□□ 0.34
VMP1-217ENST00000593168 AK7Q96M32 723 aa17.17■□□□□ 0.34
VMP1-217ENST00000593168 WWC3Q9ULE0 1092 aa17.17■□□□□ 0.34
VMP1-217ENST00000593168 PHF14O94880 888 aa17.16■□□□□ 0.34
VMP1-217ENST00000593168 DZIP1LQ8IYY4 767 aaKnown RBP17.16■□□□□ 0.34
VMP1-217ENST00000593168 TTC5Q8N0Z6 440 aa17.16■□□□□ 0.34
VMP1-217ENST00000593168 STK31Q9BXU1 1019 aa17.16■□□□□ 0.34
VMP1-217ENST00000593168 TCERG1O14776 1098 aaKnown RBP17.15■□□□□ 0.34
VMP1-217ENST00000593168 SLC4A2P04920 1241 aa17.15■□□□□ 0.34
VMP1-217ENST00000593168 TRIM27P14373 513 aa17.15■□□□□ 0.34
VMP1-217ENST00000593168 HSPA6P17066 643 aa17.15■□□□□ 0.34
VMP1-217ENST00000593168 SLC39A6Q13433 755 aa17.15■□□□□ 0.34
VMP1-217ENST00000593168 PANK1Q8TE04 598 aa17.15■□□□□ 0.34
VMP1-217ENST00000593168 SMARCC1Q92922 1105 aaPredicted RBP17.15■□□□□ 0.34
VMP1-217ENST00000593168 API5Q9BZZ5 524 aaKnown RBP17.15■□□□□ 0.34
VMP1-217ENST00000593168 CACNA1FO60840 1977 aa17.15■□□□□ 0.34
VMP1-217ENST00000593168 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.14■□□□□ 0.33
VMP1-217ENST00000593168 HMGB2P26583 209 aaKnown RBP17.14■□□□□ 0.33
VMP1-217ENST00000593168 HDGFL1Q5TGJ6 251 aa17.14■□□□□ 0.33
VMP1-217ENST00000593168 PIGBQ92521 554 aa17.14■□□□□ 0.33
VMP1-217ENST00000593168 FMNL2Q96PY5 1086 aa17.14■□□□□ 0.33
VMP1-217ENST00000593168 TMOD3Q9NYL9 352 aa17.14■□□□□ 0.33
VMP1-217ENST00000593168 PTPRCP08575 1304 aa17.14■□□□□ 0.33
VMP1-217ENST00000593168 KIAA1551Q9HCM1 1747 aa17.13■□□□□ 0.33
VMP1-217ENST00000593168 RLBP1P12271 317 aa17.13■□□□□ 0.33
VMP1-217ENST00000593168 AAMPQ13685 434 aa17.13■□□□□ 0.33
VMP1-217ENST00000593168 FTSJ3Q8IY81 847 aaKnown RBP17.13■□□□□ 0.33
VMP1-217ENST00000593168 LINC00116Q8NCU8 138 aa17.13■□□□□ 0.33
VMP1-217ENST00000593168 ZNF496Q96IT1 587 aaPredicted RBP17.13■□□□□ 0.33
VMP1-217ENST00000593168 CICQ96RK0 1608 aaPredicted RBP17.13■□□□□ 0.33
VMP1-217ENST00000593168 SNRPA1P09661 255 aaKnown RBP17.12■□□□□ 0.33
VMP1-217ENST00000593168 CLUAP1Q96AJ1 413 aa17.12■□□□□ 0.33
VMP1-217ENST00000593168 TNNQ9UQP3 1299 aa17.12■□□□□ 0.33
VMP1-217ENST00000593168 COG6Q9Y2V7 657 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms