RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TULP1O00294 542 aaPredicted RBP11.9□□□□□ -0.5
LIG3-216ENST00000593099 TNNT3P45378 269 aaPredicted RBP11.9□□□□□ -0.5
LIG3-216ENST00000593099 CAVIN4Q5BKX8 364 aa11.9□□□□□ -0.5
LIG3-216ENST00000593099 NLRP3Q96P20 1036 aa11.9□□□□□ -0.5
LIG3-216ENST00000593099 KIF24Q5T7B8 1368 aa11.9□□□□□ -0.5
LIG3-216ENST00000593099 ERICH2A1L162 156 aa11.9□□□□□ -0.5
LIG3-216ENST00000593099 CDC45O75419 566 aa11.9□□□□□ -0.5
LIG3-216ENST00000593099 TPTE2Q6XPS3 522 aa11.9□□□□□ -0.5
LIG3-216ENST00000593099 KIF1BPQ96EK5 621 aa11.9□□□□□ -0.5
LIG3-216ENST00000593099 LRRFIP2Q9Y608 721 aaKnown RBP11.9□□□□□ -0.5
LIG3-216ENST00000593099 TRIM27P14373 513 aa11.9□□□□□ -0.5
LIG3-216ENST00000593099 PIP4K2AP48426 406 aaPredicted RBP11.9□□□□□ -0.5
LIG3-216ENST00000593099 ZSCAN25Q6NSZ9 544 aa11.9□□□□□ -0.5
LIG3-216ENST00000593099 NYXQ9GZU5 481 aa11.9□□□□□ -0.5
LIG3-216ENST00000593099 ZNF219Q9P2Y4 722 aaPredicted RBP11.9□□□□□ -0.5
LIG3-216ENST00000593099 PARP3Q9Y6F1 533 aa11.9□□□□□ -0.5
LIG3-216ENST00000593099 PHKG2P15735 406 aa11.9□□□□□ -0.51
LIG3-216ENST00000593099 DEKP35659 375 aaKnown RBP11.9□□□□□ -0.51
LIG3-216ENST00000593099 ARHGAP45Q92619 1136 aa11.9□□□□□ -0.51
LIG3-216ENST00000593099 IL1RAPL2Q9NP60 686 aa11.9□□□□□ -0.51
LIG3-216ENST00000593099 JCADQ9P266 1359 aa11.9□□□□□ -0.51
LIG3-216ENST00000593099 ALDH1L1O75891 902 aa11.89□□□□□ -0.51
LIG3-216ENST00000593099 RBM5P52756 815 aaKnown RBP eCLIP11.89□□□□□ -0.51
LIG3-216ENST00000593099 FKBP4Q02790 459 aaKnown RBP eCLIP11.89□□□□□ -0.51
LIG3-216ENST00000593099 ERBB3P21860 1342 aa11.89□□□□□ -0.51
LIG3-216ENST00000593099 RAB11FIP3O75154 756 aa11.89□□□□□ -0.51
LIG3-216ENST00000593099 CCDC152Q4G0S7 254 aa11.89□□□□□ -0.51
LIG3-216ENST00000593099 FAM196AQ6ZSG2 479 aa11.89□□□□□ -0.51
LIG3-216ENST00000593099 DDX21Q9NR30 783 aaKnown RBP eCLIP11.89□□□□□ -0.51
LIG3-216ENST00000593099 EXOC6BQ9Y2D4 811 aa11.89□□□□□ -0.51
LIG3-216ENST00000593099 ADAMTS13Q76LX8 1427 aa11.89□□□□□ -0.51
LIG3-216ENST00000593099 C6orf229H3BNL8 230 aa11.89□□□□□ -0.51
LIG3-216ENST00000593099 LDHAL6AQ6ZMR3 332 aa11.89□□□□□ -0.51
LIG3-216ENST00000593099 UTP14AQ9BVJ6 771 aaKnown RBP11.89□□□□□ -0.51
LIG3-216ENST00000593099 SLC3A2P08195 630 aaKnown RBP11.88□□□□□ -0.51
LIG3-216ENST00000593099 HOXB7P09629 217 aa11.88□□□□□ -0.51
LIG3-216ENST00000593099 CHAF1AQ13111 956 aaPredicted RBP11.88□□□□□ -0.51
LIG3-216ENST00000593099 C1orf167Q5SNV9 1468 aa11.88□□□□□ -0.51
LIG3-216ENST00000593099 RAI14Q9P0K7 980 aa11.88□□□□□ -0.51
LIG3-216ENST00000593099 PIK3C2BO00750 1634 aa11.88□□□□□ -0.51
LIG3-216ENST00000593099 DHX16O60231 1041 aaKnown RBP11.88□□□□□ -0.51
LIG3-216ENST00000593099 PDE4AP27815 886 aa11.88□□□□□ -0.51
LIG3-216ENST00000593099 LRP2BPQ9P2M1 347 aa11.88□□□□□ -0.51
LIG3-216ENST00000593099 SLC5A1P13866 664 aa11.87□□□□□ -0.51
LIG3-216ENST00000593099 KRT27Q7Z3Y8 459 aa11.87□□□□□ -0.51
LIG3-216ENST00000593099 LINS1Q8NG48 757 aa11.87□□□□□ -0.51
LIG3-216ENST00000593099 TNS3Q68CZ2 1445 aa11.87□□□□□ -0.51
LIG3-216ENST00000593099 AFF2P51816 1311 aa11.87□□□□□ -0.51
LIG3-216ENST00000593099 THRAP3Q9Y2W1 955 aaKnown RBP11.87□□□□□ -0.51
LIG3-216ENST00000593099 MADDQ8WXG6 1647 aa11.87□□□□□ -0.51
LIG3-216ENST00000593099 NFXL1Q6ZNB6 911 aa11.87□□□□□ -0.51
LIG3-216ENST00000593099 SPATA31D1Q6ZQQ2 1576 aa11.87□□□□□ -0.51
LIG3-216ENST00000593099 DNAJC10Q8IXB1 793 aa11.87□□□□□ -0.51
LIG3-216ENST00000593099 CCDC87Q9NVE4 849 aa11.87□□□□□ -0.51
LIG3-216ENST00000593099 TMOD2Q9NZR1 351 aa11.87□□□□□ -0.51
LIG3-216ENST00000593099 NACAP1Q9BZK3 213 aa11.87□□□□□ -0.51
LIG3-216ENST00000593099 VAMP4O75379 141 aa11.86□□□□□ -0.51
LIG3-216ENST00000593099 KRT24Q2M2I5 525 aa11.86□□□□□ -0.51
LIG3-216ENST00000593099 ABCF2Q9UG63 623 aa11.86□□□□□ -0.51
LIG3-216ENST00000593099 CPLX1O14810 134 aa11.86□□□□□ -0.51
LIG3-216ENST00000593099 CHL1O00533 1208 aa11.86□□□□□ -0.51
LIG3-216ENST00000593099 HSPA1LP34931 641 aa11.86□□□□□ -0.51
LIG3-216ENST00000593099 CHD1LQ86WJ1 897 aa11.86□□□□□ -0.51
LIG3-216ENST00000593099 SEPT12Q8IYM1 358 aa11.86□□□□□ -0.51
LIG3-216ENST00000593099 FAM184AQ8NB25 1140 aa11.86□□□□□ -0.51
LIG3-216ENST00000593099 TULP4Q9NRJ4 1543 aa11.86□□□□□ -0.51
LIG3-216ENST00000593099 ZNF496Q96IT1 587 aaPredicted RBP11.86□□□□□ -0.51
LIG3-216ENST00000593099 IGSF1Q8N6C5 1336 aa11.85□□□□□ -0.51
LIG3-216ENST00000593099 GRM8O00222 908 aa11.85□□□□□ -0.51
LIG3-216ENST00000593099 JARID2Q92833 1246 aaPredicted RBP11.85□□□□□ -0.51
LIG3-216ENST00000593099 FRMPD1Q5SYB0 1578 aa11.85□□□□□ -0.51
LIG3-216ENST00000593099 MARCH6O60337 910 aa11.85□□□□□ -0.51
LIG3-216ENST00000593099 ANKRD18AQ8IVF6 992 aa11.85□□□□□ -0.51
LIG3-216ENST00000593099 MRPL50Q8N5N7 158 aaKnown RBP11.85□□□□□ -0.51
LIG3-216ENST00000593099 TSPYL6Q8N831 410 aa11.85□□□□□ -0.51
LIG3-216ENST00000593099 IDH1O75874 414 aaKnown RBP11.84□□□□□ -0.51
LIG3-216ENST00000593099 CWC22Q9HCG8 908 aaKnown RBP11.84□□□□□ -0.51
LIG3-216ENST00000593099 SPINK5Q9NQ38 1064 aaPredicted RBP11.84□□□□□ -0.51
LIG3-216ENST00000593099 NEXMIFQ5QGS0 1516 aa11.84□□□□□ -0.51
LIG3-216ENST00000593099 SART3Q15020 963 aaKnown RBP11.84□□□□□ -0.51
LIG3-216ENST00000593099 PARP10Q53GL7 1025 aa11.84□□□□□ -0.51
LIG3-216ENST00000593099 SPATA31A6Q5VVP1 1343 aa11.84□□□□□ -0.51
LIG3-216ENST00000593099 VPS53Q5VIR6 699 aa11.84□□□□□ -0.51
LIG3-216ENST00000593099 FLAD1Q8NFF5 587 aa11.84□□□□□ -0.51
LIG3-216ENST00000593099 A1BGP04217 495 aa11.83□□□□□ -0.52
LIG3-216ENST00000593099 NCBP3Q53F19 620 aaKnown RBP11.83□□□□□ -0.52
LIG3-216ENST00000593099 NOP58Q9Y2X3 529 aaKnown RBP11.83□□□□□ -0.52
LIG3-216ENST00000593099 GLRX3O76003 335 aaKnown RBP11.83□□□□□ -0.52
LIG3-216ENST00000593099 PREX1Q8TCU6 1659 aa11.83□□□□□ -0.52
LIG3-216ENST00000593099 FER1L4A9Z1Z3 1794 aa11.83□□□□□ -0.52
LIG3-216ENST00000593099 IL17REQ8NFR9 667 aa11.83□□□□□ -0.52
LIG3-216ENST00000593099 SETBP1Q9Y6X0 1596 aa11.83□□□□□ -0.52
LIG3-216ENST00000593099 PSMA5P28066 241 aa11.83□□□□□ -0.52
LIG3-216ENST00000593099 RBM6P78332 1123 aaKnown RBP11.83□□□□□ -0.52
LIG3-216ENST00000593099 SAMD1Q6SPF0 538 aaPredicted RBP11.83□□□□□ -0.52
LIG3-216ENST00000593099 NUTM1Q86Y26 1132 aa11.83□□□□□ -0.52
LIG3-216ENST00000593099 ZSCAN29Q8IWY8 852 aaPredicted RBP11.83□□□□□ -0.52
LIG3-216ENST00000593099 CCDC34Q96HJ3 373 aa11.83□□□□□ -0.52
LIG3-216ENST00000593099 SLKQ9H2G2 1235 aaPredicted RBP11.83□□□□□ -0.52
LIG3-216ENST00000593099 TRIM35Q9UPQ4 493 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms