RNA–Protein interactions for RNA: ENST00000590541.1

RETREG3-210, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 409 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-210ENST00000590541 GLTPD2A6NH11 291 aa23.78■■□□□ 1.4
RETREG3-210ENST00000590541 SCN11AQ9UI33 1791 aa23.78■■□□□ 1.4
RETREG3-210ENST00000590541 AFDNP55196 1824 aaKnown RBP23.77■■□□□ 1.4
RETREG3-210ENST00000590541 NRXN2Q9P2S2 1712 aa23.77■■□□□ 1.4
RETREG3-210ENST00000590541 LMNB1P20700 586 aa23.77■■□□□ 1.4
RETREG3-210ENST00000590541 NFIXQ14938 502 aa23.77■■□□□ 1.4
RETREG3-210ENST00000590541 VEGFAP15692 232 aaPredicted RBP23.76■■□□□ 1.39
RETREG3-210ENST00000590541 SULT6B1Q6IMI4 303 aa23.76■■□□□ 1.39
RETREG3-210ENST00000590541 DLEC1Q9Y238 1755 aa23.75■■□□□ 1.39
RETREG3-210ENST00000590541 HSPA1AP0DMV8 641 aaKnown RBP23.74■■□□□ 1.39
RETREG3-210ENST00000590541 HSPA1BP0DMV9 641 aaKnown RBP23.74■■□□□ 1.39
RETREG3-210ENST00000590541 CYP19A1P11511 503 aaPredicted RBP23.74■■□□□ 1.39
RETREG3-210ENST00000590541 BCL2L12Q9HB09 334 aa23.74■■□□□ 1.39
RETREG3-210ENST00000590541 NARFQ9UHQ1 456 aa23.74■■□□□ 1.39
RETREG3-210ENST00000590541 PANK3Q9H999 370 aa23.73■■□□□ 1.39
RETREG3-210ENST00000590541 SLC52A2Q9HAB3 445 aa23.73■■□□□ 1.39
RETREG3-210ENST00000590541 SERPINB2P05120 415 aa23.72■■□□□ 1.39
RETREG3-210ENST00000590541 TTLL6Q8N841 843 aa23.72■■□□□ 1.39
RETREG3-210ENST00000590541 LGR6Q9HBX8 967 aa23.72■■□□□ 1.39
RETREG3-210ENST00000590541 ZBTB1Q9Y2K1 713 aa23.72■■□□□ 1.39
RETREG3-210ENST00000590541 COL15A1P39059 1388 aa23.72■■□□□ 1.39
RETREG3-210ENST00000590541 TIAM2Q8IVF5 1701 aa23.72■■□□□ 1.39
RETREG3-210ENST00000590541 POTECB2RU33 542 aa23.71■■□□□ 1.39
RETREG3-210ENST00000590541 NFKBIEO00221 500 aa23.71■■□□□ 1.39
RETREG3-210ENST00000590541 SLC39A6Q13433 755 aa23.71■■□□□ 1.39
RETREG3-210ENST00000590541 AKAP4Q5JQC9 854 aa23.71■■□□□ 1.39
RETREG3-210ENST00000590541 CARMIL3Q8ND23 1372 aa23.7■■□□□ 1.38
RETREG3-210ENST00000590541 IL13P35225 146 aa23.7■■□□□ 1.38
RETREG3-210ENST00000590541 MRC1P22897 1456 aa23.69■■□□□ 1.38
RETREG3-210ENST00000590541 MORC1Q86VD1 984 aa23.69■■□□□ 1.38
RETREG3-210ENST00000590541 C2CD5Q86YS7 1000 aa23.69■■□□□ 1.38
RETREG3-210ENST00000590541 CCDC88AQ3V6T2 1871 aa23.68■■□□□ 1.38
RETREG3-210ENST00000590541 CCER1Q8TC90 406 aaPredicted RBP23.68■■□□□ 1.38
RETREG3-210ENST00000590541 RNMTO43148 476 aaKnown RBP23.67■■□□□ 1.38
RETREG3-210ENST00000590541 H0YIN7 160 aa23.65■■□□□ 1.38
RETREG3-210ENST00000590541 DPY19L2Q6NUT2 758 aa23.63■■□□□ 1.37
RETREG3-210ENST00000590541 VSIG10Q8N0Z9 540 aa23.63■■□□□ 1.37
RETREG3-210ENST00000590541 VIRMAQ69YN4 1812 aaKnown RBP23.62■■□□□ 1.37
RETREG3-210ENST00000590541 CANXP27824 592 aaKnown RBP23.62■■□□□ 1.37
RETREG3-210ENST00000590541 BICDL1Q6ZP65 573 aa23.62■■□□□ 1.37
RETREG3-210ENST00000590541 ANKRD31Q8N7Z5 1873 aa23.61■■□□□ 1.37
RETREG3-210ENST00000590541 EIF5P55010 431 aaKnown RBP23.6■■□□□ 1.37
RETREG3-210ENST00000590541 UBR2Q8IWV8 1755 aa23.6■■□□□ 1.37
RETREG3-210ENST00000590541 C21orf2O43822 256 aa23.59■■□□□ 1.37
RETREG3-210ENST00000590541 HSPA5P11021 654 aaKnown RBP23.59■■□□□ 1.37
RETREG3-210ENST00000590541 ERFEQ4G0M1 354 aa23.59■■□□□ 1.37
RETREG3-210ENST00000590541 TBC1D9BQ66K14 1250 aa23.59■■□□□ 1.37
RETREG3-210ENST00000590541 ZNF622Q969S3 477 aaKnown RBP eCLIP23.59■■□□□ 1.37
RETREG3-210ENST00000590541 FER1L6Q2WGJ9 1857 aa23.58■■□□□ 1.37
RETREG3-210ENST00000590541 HMOX1P09601 288 aa23.58■■□□□ 1.37
RETREG3-210ENST00000590541 MTHFSDQ2M296 383 aaKnown RBP23.58■■□□□ 1.37
RETREG3-210ENST00000590541 CREBZFQ9NS37 354 aa23.58■■□□□ 1.37
RETREG3-210ENST00000590541 ZNF219Q9P2Y4 722 aaPredicted RBP23.58■■□□□ 1.37
RETREG3-210ENST00000590541 DICER1Q9UPY3 1922 aaKnown RBP23.58■■□□□ 1.37
RETREG3-210ENST00000590541 COL11A2P13942 1736 aaPredicted RBP23.57■■□□□ 1.36
RETREG3-210ENST00000590541 POTEIP0CG38 1075 aa23.57■■□□□ 1.36
RETREG3-210ENST00000590541 POTEJP0CG39 1038 aa23.57■■□□□ 1.36
RETREG3-210ENST00000590541 EIF4G2P78344 907 aaKnown RBP eCLIP23.57■■□□□ 1.36
RETREG3-210ENST00000590541 CHADLQ6NUI6 762 aa23.57■■□□□ 1.36
RETREG3-210ENST00000590541 BRIP1Q9BX63 1249 aa23.57■■□□□ 1.36
RETREG3-210ENST00000590541 PDE6BP35913 854 aa23.56■■□□□ 1.36
RETREG3-210ENST00000590541 PRR5LQ6MZQ0 368 aa23.56■■□□□ 1.36
RETREG3-210ENST00000590541 CCDC24Q8N4L8 307 aa23.56■■□□□ 1.36
RETREG3-210ENST00000590541 MKRN1Q9UHC7 482 aaKnown RBP23.56■■□□□ 1.36
RETREG3-210ENST00000590541 PDZRN3Q9UPQ7 1066 aa23.56■■□□□ 1.36
RETREG3-210ENST00000590541 A0A087WZG4 1122 aa23.55■■□□□ 1.36
RETREG3-210ENST00000590541 STARD3NLO95772 234 aa23.55■■□□□ 1.36
RETREG3-210ENST00000590541 KNSTRNQ9Y448 316 aa23.55■■□□□ 1.36
RETREG3-210ENST00000590541 LTBP3Q9NS15 1303 aa23.55■■□□□ 1.36
RETREG3-210ENST00000590541 SCN7AQ01118 1682 aa23.54■■□□□ 1.36
RETREG3-210ENST00000590541 DDNO94850 711 aaPredicted RBP23.54■■□□□ 1.36
RETREG3-210ENST00000590541 TAOK3Q9H2K8 898 aa23.53■■□□□ 1.36
RETREG3-210ENST00000590541 AMER1Q5JTC6 1135 aaPredicted RBP23.52■■□□□ 1.36
RETREG3-210ENST00000590541 TTC5Q8N0Z6 440 aa23.52■■□□□ 1.36
RETREG3-210ENST00000590541 TBC1D2BQ9UPU7 963 aa23.52■■□□□ 1.36
RETREG3-210ENST00000590541 ZNF496Q96IT1 587 aaPredicted RBP23.51■■□□□ 1.35
RETREG3-210ENST00000590541 FOXN1O15353 648 aa23.5■■□□□ 1.35
RETREG3-210ENST00000590541 CNTNAP1P78357 1384 aa23.5■■□□□ 1.35
RETREG3-210ENST00000590541 HEG1Q9ULI3 1381 aa23.5■■□□□ 1.35
RETREG3-210ENST00000590541 SLX4Q8IY92 1834 aa23.49■■□□□ 1.35
RETREG3-210ENST00000590541 PASKQ96RG2 1323 aa23.49■■□□□ 1.35
RETREG3-210ENST00000590541 IL6STP40189 918 aaPredicted RBP23.48■■□□□ 1.35
RETREG3-210ENST00000590541 PRPF40BQ6NWY9 871 aaKnown RBP23.48■■□□□ 1.35
RETREG3-210ENST00000590541 ZNF790Q6PG37 636 aa23.48■■□□□ 1.35
RETREG3-210ENST00000590541 CNKSR1Q969H4 720 aa23.48■■□□□ 1.35
RETREG3-210ENST00000590541 ZNF330Q9Y3S2 320 aaPredicted RBP23.48■■□□□ 1.35
RETREG3-210ENST00000590541 SRGNP10124 158 aa23.47■■□□□ 1.35
RETREG3-210ENST00000590541 STYK1Q6J9G0 422 aa23.47■■□□□ 1.35
RETREG3-210ENST00000590541 TEX13AQ9BXU3 409 aaPredicted RBP23.47■■□□□ 1.35
RETREG3-210ENST00000590541 CAMTA2O94983 1202 aa23.46■■□□□ 1.35
RETREG3-210ENST00000590541 CNBD1Q8NA66 436 aa23.46■■□□□ 1.35
RETREG3-210ENST00000590541 IL17REQ8NFR9 667 aa23.46■■□□□ 1.35
RETREG3-210ENST00000590541 CACNA1SQ13698 1873 aa23.45■■□□□ 1.35
RETREG3-210ENST00000590541 ARFGEF2Q9Y6D5 1785 aa23.45■■□□□ 1.34
RETREG3-210ENST00000590541 DIAPH1O60610 1272 aaKnown RBP23.45■■□□□ 1.34
RETREG3-210ENST00000590541 LDHDQ86WU2 507 aa23.45■■□□□ 1.34
RETREG3-210ENST00000590541 MASTLQ96GX5 879 aa23.45■■□□□ 1.34
RETREG3-210ENST00000590541 L3MBTL3Q96JM7 780 aaPredicted RBP23.45■■□□□ 1.34
RETREG3-210ENST00000590541 SETDB2Q96T68 719 aa23.45■■□□□ 1.34
RETREG3-210ENST00000590541 PRDM10Q9NQV6 1147 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms