RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 EML3Q32P44 896 aa7.63□□□□□ -1.19
VPS4B-203ENST00000588323 SLCO4C1Q6ZQN7 724 aa7.63□□□□□ -1.19
VPS4B-203ENST00000588323 ZCCHC2Q9C0B9 1178 aaKnown RBP7.63□□□□□ -1.19
VPS4B-203ENST00000588323 DNAAF2Q9NVR5 837 aaKnown RBP7.63□□□□□ -1.19
VPS4B-203ENST00000588323 A0A1W2PNR3 127 aa7.62□□□□□ -1.19
VPS4B-203ENST00000588323 CDK2AP1O14519 115 aa7.62□□□□□ -1.19
VPS4B-203ENST00000588323 SLC4A9Q96Q91 983 aa7.62□□□□□ -1.19
VPS4B-203ENST00000588323 CABP1Q9NZU7 370 aa7.62□□□□□ -1.19
VPS4B-203ENST00000588323 NOD1Q9Y239 953 aa7.62□□□□□ -1.19
VPS4B-203ENST00000588323 PCDHGA11Q9Y5H2 935 aa7.62□□□□□ -1.19
VPS4B-203ENST00000588323 BACH1O14867 736 aa7.61□□□□□ -1.19
VPS4B-203ENST00000588323 ARAFP10398 606 aa7.61□□□□□ -1.19
VPS4B-203ENST00000588323 PSME1Q06323 249 aa7.61□□□□□ -1.19
VPS4B-203ENST00000588323 MTFR1Q15390 333 aa7.61□□□□□ -1.19
VPS4B-203ENST00000588323 SPOCK3Q9BQ16 436 aa7.61□□□□□ -1.19
VPS4B-203ENST00000588323 ZDHHC3Q9NYG2 299 aa7.61□□□□□ -1.19
VPS4B-203ENST00000588323 IQSEC3Q9UPP2 1182 aaPredicted RBP7.61□□□□□ -1.19
VPS4B-203ENST00000588323 GJA3Q9Y6H8 435 aa7.61□□□□□ -1.19
VPS4B-203ENST00000588323 DCDC2BA2VCK2 349 aa7.6□□□□□ -1.19
VPS4B-203ENST00000588323 LZTS3O60299 673 aaPredicted RBP7.6□□□□□ -1.19
VPS4B-203ENST00000588323 ALYREFQ86V81 257 aaKnown RBP7.6□□□□□ -1.19
VPS4B-203ENST00000588323 ALG2Q9H553 416 aa7.6□□□□□ -1.19
VPS4B-203ENST00000588323 USP3Q9Y6I4 520 aa7.6□□□□□ -1.19
VPS4B-203ENST00000588323 NEURL1BA8MQ27 555 aa7.59□□□□□ -1.19
VPS4B-203ENST00000588323 PIK3R2O00459 728 aa7.59□□□□□ -1.19
VPS4B-203ENST00000588323 KHNYNO15037 678 aaKnown RBP7.59□□□□□ -1.19
VPS4B-203ENST00000588323 RAD21O60216 631 aa7.59□□□□□ -1.19
VPS4B-203ENST00000588323 ITGB2P05107 769 aa7.59□□□□□ -1.19
VPS4B-203ENST00000588323 MAPTP10636 758 aaKnown RBP7.59□□□□□ -1.19
VPS4B-203ENST00000588323 EPXP11678 715 aa7.59□□□□□ -1.19
VPS4B-203ENST00000588323 GTF2IP78347 998 aa7.59□□□□□ -1.19
VPS4B-203ENST00000588323 BICDL1Q6ZP65 573 aa7.59□□□□□ -1.19
VPS4B-203ENST00000588323 ZNF295-AS1Q8N0V1 137 aa7.59□□□□□ -1.19
VPS4B-203ENST00000588323 NFATC2IPQ8NCF5 419 aa7.59□□□□□ -1.19
VPS4B-203ENST00000588323 TNP2Q05952 138 aa7.58□□□□□ -1.2
VPS4B-203ENST00000588323 NCOA4Q13772 614 aa7.58□□□□□ -1.2
VPS4B-203ENST00000588323 BTBD6Q96KE9 485 aa7.58□□□□□ -1.2
VPS4B-203ENST00000588323 ZIC5Q96T25 663 aa7.58□□□□□ -1.2
VPS4B-203ENST00000588323 KRBA1A5PL33 1030 aa7.57□□□□□ -1.2
VPS4B-203ENST00000588323 PROCP04070 461 aa7.57□□□□□ -1.2
VPS4B-203ENST00000588323 PRKCSHP14314 528 aaPredicted RBP7.57□□□□□ -1.2
VPS4B-203ENST00000588323 CD33P20138 364 aa7.57□□□□□ -1.2
VPS4B-203ENST00000588323 ADH6P28332 368 aa7.57□□□□□ -1.2
VPS4B-203ENST00000588323 GRIN2CQ14957 1233 aa7.57□□□□□ -1.2
VPS4B-203ENST00000588323 FAM182BQ5T319 152 aa7.57□□□□□ -1.2
VPS4B-203ENST00000588323 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.57□□□□□ -1.2
VPS4B-203ENST00000588323 ZNF358Q9NW07 568 aa7.57□□□□□ -1.2
VPS4B-203ENST00000588323 SCHIP1Q9P0W5 487 aaPredicted RBP7.57□□□□□ -1.2
VPS4B-203ENST00000588323 PARP3Q9Y6F1 533 aa7.57□□□□□ -1.2
VPS4B-203ENST00000588323 GNB5O14775 395 aa7.56□□□□□ -1.2
VPS4B-203ENST00000588323 FAM157BP0CG42 384 aa7.56□□□□□ -1.2
VPS4B-203ENST00000588323 HOXB4P17483 251 aaPredicted RBP7.56□□□□□ -1.2
VPS4B-203ENST00000588323 COL8A1P27658 744 aa7.56□□□□□ -1.2
VPS4B-203ENST00000588323 LINC00114Q6XXX2 140 aa7.56□□□□□ -1.2
VPS4B-203ENST00000588323 DEPDC4Q8N2C3 294 aa7.56□□□□□ -1.2
VPS4B-203ENST00000588323 POM121Q96HA1 1249 aa7.56□□□□□ -1.2
VPS4B-203ENST00000588323 USP17L5A8MUK1 530 aa7.55□□□□□ -1.2
VPS4B-203ENST00000588323 SUV39H2Q9H5I1 410 aa7.55□□□□□ -1.2
VPS4B-203ENST00000588323 AVENQ9NQS1 362 aaPredicted RBP7.55□□□□□ -1.2
VPS4B-203ENST00000588323 PRR12Q9ULL5 1215 aa7.55□□□□□ -1.2
VPS4B-203ENST00000588323 UBTFP17480 764 aaKnown RBP7.54□□□□□ -1.2
VPS4B-203ENST00000588323 TXLNAP40222 546 aa7.54□□□□□ -1.2
VPS4B-203ENST00000588323 TEAD4Q15561 434 aa7.54□□□□□ -1.2
VPS4B-203ENST00000588323 SAMD5Q5TGI4 173 aa7.54□□□□□ -1.2
VPS4B-203ENST00000588323 CHSY3Q70JA7 882 aa7.54□□□□□ -1.2
VPS4B-203ENST00000588323 TRIM50Q86XT4 487 aa7.54□□□□□ -1.2
VPS4B-203ENST00000588323 L3MBTL2Q969R5 705 aa7.54□□□□□ -1.2
VPS4B-203ENST00000588323 MARK1Q9P0L2 795 aa7.54□□□□□ -1.2
VPS4B-203ENST00000588323 HCN2Q9UL51 889 aa7.54□□□□□ -1.2
VPS4B-203ENST00000588323 ADAM23O75077 832 aa7.53□□□□□ -1.2
VPS4B-203ENST00000588323 DGKGP49619 791 aa7.53□□□□□ -1.2
VPS4B-203ENST00000588323 FLIIQ13045 1269 aa7.53□□□□□ -1.2
VPS4B-203ENST00000588323 LAMC2Q13753 1193 aa7.53□□□□□ -1.2
VPS4B-203ENST00000588323 FCHSD1Q86WN1 690 aa7.53□□□□□ -1.2
VPS4B-203ENST00000588323 SLC9A9Q8IVB4 645 aa7.53□□□□□ -1.2
VPS4B-203ENST00000588323 ZDHHC1Q8WTX9 485 aa7.53□□□□□ -1.2
VPS4B-203ENST00000588323 NEUROD4Q9HD90 331 aa7.53□□□□□ -1.2
VPS4B-203ENST00000588323 NOP53Q9NZM5 478 aaKnown RBP7.53□□□□□ -1.2
VPS4B-203ENST00000588323 ZNF232Q9UNY5 417 aa7.53□□□□□ -1.2
VPS4B-203ENST00000588323 EFSO43281 561 aa7.52□□□□□ -1.21
VPS4B-203ENST00000588323 NOS2P35228 1153 aa7.52□□□□□ -1.21
VPS4B-203ENST00000588323 PCBP4P57723 403 aaKnown RBP7.52□□□□□ -1.21
VPS4B-203ENST00000588323 ZNF468Q5VIY5 522 aaPredicted RBP7.52□□□□□ -1.21
VPS4B-203ENST00000588323 TNS4Q8IZW8 715 aa7.52□□□□□ -1.21
VPS4B-203ENST00000588323 KLF15Q9UIH9 416 aa7.52□□□□□ -1.21
VPS4B-203ENST00000588323 SERTM1A2A2V5 107 aa7.51□□□□□ -1.21
VPS4B-203ENST00000588323 POM121CA8CG34 1229 aa7.51□□□□□ -1.21
VPS4B-203ENST00000588323 BAG6P46379 1132 aa7.51□□□□□ -1.21
VPS4B-203ENST00000588323 ATP1A2P50993 1020 aa7.51□□□□□ -1.21
VPS4B-203ENST00000588323 EPHA4P54764 986 aa7.51□□□□□ -1.21
VPS4B-203ENST00000588323 TBCELQ5QJ74 424 aa7.51□□□□□ -1.21
VPS4B-203ENST00000588323 LRRC69Q6ZNQ3 347 aa7.51□□□□□ -1.21
VPS4B-203ENST00000588323 TPCN2Q8NHX9 752 aa7.51□□□□□ -1.21
VPS4B-203ENST00000588323 STRN4Q9NRL3 753 aa7.51□□□□□ -1.21
VPS4B-203ENST00000588323 USP17L3A6NCW0 530 aa7.5□□□□□ -1.21
VPS4B-203ENST00000588323 USP17L4A6NCW7 530 aa7.5□□□□□ -1.21
VPS4B-203ENST00000588323 EML1O00423 815 aa7.5□□□□□ -1.21
VPS4B-203ENST00000588323 USP17L2Q6R6M4 530 aa7.5□□□□□ -1.21
VPS4B-203ENST00000588323 USP17L1Q7RTZ2 530 aa7.5□□□□□ -1.21
VPS4B-203ENST00000588323 PLEKHM2Q8IWE5 1019 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms