RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 BEGAINQ9BUH8 593 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 IL21Q9HBE4 155 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 PLA2G2EQ9NZK7 142 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 NPHP3Q7Z494 1330 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 TTC21BQ7Z4L5 1316 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 NSD2O96028 1365 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 NRKQ7Z2Y5 1582 aa7.17□□□□□ -1.26
LIG3-210ENST00000588109 USP46P62068 366 aa7.17□□□□□ -1.26
LIG3-210ENST00000588109 FUT2Q10981 343 aa7.17□□□□□ -1.26
LIG3-210ENST00000588109 RALBP1Q15311 655 aa7.17□□□□□ -1.26
LIG3-210ENST00000588109 DIXDC1Q155Q3 683 aa7.17□□□□□ -1.26
LIG3-210ENST00000588109 NME9Q86XW9 330 aa7.17□□□□□ -1.26
LIG3-210ENST00000588109 DDX17Q92841 729 aaKnown RBP7.17□□□□□ -1.26
LIG3-210ENST00000588109 MTRQ99707 1265 aa7.17□□□□□ -1.26
LIG3-210ENST00000588109 GGNBP2Q9H3C7 697 aa7.17□□□□□ -1.26
LIG3-210ENST00000588109 PRKRIP1Q9H875 184 aaPredicted RBP7.17□□□□□ -1.26
LIG3-210ENST00000588109 TTC21AQ8NDW8 1320 aa7.17□□□□□ -1.26
LIG3-210ENST00000588109 BRD4O60885 1362 aaPredicted RBP7.17□□□□□ -1.26
LIG3-210ENST00000588109 NPC1L1Q9UHC9 1359 aa7.17□□□□□ -1.26
LIG3-210ENST00000588109 ROBO1Q9Y6N7 1651 aa7.16□□□□□ -1.26
LIG3-210ENST00000588109 FYB1O15117 783 aa7.16□□□□□ -1.26
LIG3-210ENST00000588109 TNNT2P45379 298 aaPredicted RBP7.16□□□□□ -1.26
LIG3-210ENST00000588109 ABTB2Q8N961 1025 aa7.16□□□□□ -1.26
LIG3-210ENST00000588109 COG3Q96JB2 828 aa7.16□□□□□ -1.26
LIG3-210ENST00000588109 PARD3Q8TEW0 1356 aa7.16□□□□□ -1.26
LIG3-210ENST00000588109 ANKRD26Q9UPS8 1709 aa7.15□□□□□ -1.26
LIG3-210ENST00000588109 PUS10Q3MIT2 529 aaKnown RBP7.15□□□□□ -1.26
LIG3-210ENST00000588109 TJAP1Q5JTD0 557 aa7.15□□□□□ -1.26
LIG3-210ENST00000588109 NUTM2GQ5VZR2 741 aa7.15□□□□□ -1.26
LIG3-210ENST00000588109 BLOC1S3Q6QNY0 202 aa7.15□□□□□ -1.26
LIG3-210ENST00000588109 KDM4CQ9H3R0 1056 aa7.15□□□□□ -1.26
LIG3-210ENST00000588109 SSH2Q76I76 1423 aa7.15□□□□□ -1.27
LIG3-210ENST00000588109 SBNO1A3KN83 1393 aa7.14□□□□□ -1.27
LIG3-210ENST00000588109 PIK3C2AO00443 1686 aa7.14□□□□□ -1.27
LIG3-210ENST00000588109 MS4A1P11836 297 aa7.14□□□□□ -1.27
LIG3-210ENST00000588109 NHSL1Q5SYE7 1610 aa7.14□□□□□ -1.27
LIG3-210ENST00000588109 TNS3Q68CZ2 1445 aa7.14□□□□□ -1.27
LIG3-210ENST00000588109 NLRP13Q86W25 1043 aa7.14□□□□□ -1.27
LIG3-210ENST00000588109 SCUBE3Q8IX30 993 aa7.14□□□□□ -1.27
LIG3-210ENST00000588109 PXDNQ92626 1479 aa7.14□□□□□ -1.27
LIG3-210ENST00000588109 MYBBP1AQ9BQG0 1328 aaKnown RBP7.14□□□□□ -1.27
LIG3-210ENST00000588109 GPBP1L1Q9HC44 474 aaPredicted RBP7.14□□□□□ -1.27
LIG3-210ENST00000588109 TRPM3Q9HCF6 1732 aaPredicted RBP7.14□□□□□ -1.27
LIG3-210ENST00000588109 OVOS2A0A0J9YW53 1432 aa7.13□□□□□ -1.27
LIG3-210ENST00000588109 OVOS2Q6IE36 1432 aa7.13□□□□□ -1.27
LIG3-210ENST00000588109 ARHGEF10O15013 1369 aa7.13□□□□□ -1.27
LIG3-210ENST00000588109 USP31Q70CQ4 1352 aa7.13□□□□□ -1.27
LIG3-210ENST00000588109 SOS2Q07890 1332 aaPredicted RBP7.13□□□□□ -1.27
LIG3-210ENST00000588109 SPATA31A3Q5VYP0 1347 aa7.13□□□□□ -1.27
LIG3-210ENST00000588109 ZPR1O75312 459 aa7.13□□□□□ -1.27
LIG3-210ENST00000588109 ITGBL1O95965 494 aaPredicted RBP7.13□□□□□ -1.27
LIG3-210ENST00000588109 PPP2R1AP30153 589 aa7.13□□□□□ -1.27
LIG3-210ENST00000588109 DDRGK1Q96HY6 314 aa7.13□□□□□ -1.27
LIG3-210ENST00000588109 ARXQ96QS3 562 aa7.13□□□□□ -1.27
LIG3-210ENST00000588109 RSPH6AQ9H0K4 717 aa7.13□□□□□ -1.27
LIG3-210ENST00000588109 PHLPP1O60346 1717 aa7.13□□□□□ -1.27
LIG3-210ENST00000588109 AHDC1Q5TGY3 1603 aaPredicted RBP7.12□□□□□ -1.27
LIG3-210ENST00000588109 CCER2I3L3R5 266 aa7.12□□□□□ -1.27
LIG3-210ENST00000588109 PPM1GO15355 546 aaPredicted RBP7.12□□□□□ -1.27
LIG3-210ENST00000588109 Q3C1V9 767 aa7.12□□□□□ -1.27
LIG3-210ENST00000588109 MORN1Q5T089 497 aa7.12□□□□□ -1.27
LIG3-210ENST00000588109 ZNF516Q92618 1163 aa7.12□□□□□ -1.27
LIG3-210ENST00000588109 MRS2Q9HD23 443 aa7.12□□□□□ -1.27
LIG3-210ENST00000588109 ALS2Q96Q42 1657 aa7.12□□□□□ -1.27
LIG3-210ENST00000588109 ZBTB7CA1YPR0 619 aa7.11□□□□□ -1.27
LIG3-210ENST00000588109 KCNH5Q8NCM2 988 aa7.11□□□□□ -1.27
LIG3-210ENST00000588109 SPIRE2Q8WWL2 714 aa7.11□□□□□ -1.27
LIG3-210ENST00000588109 LRRC59Q96AG4 307 aaKnown RBP7.11□□□□□ -1.27
LIG3-210ENST00000588109 CFAP53Q96M91 514 aa7.11□□□□□ -1.27
LIG3-210ENST00000588109 USP54Q70EL1 1684 aa7.11□□□□□ -1.27
LIG3-210ENST00000588109 FMNL1O95466 1100 aaPredicted RBP7.1□□□□□ -1.27
LIG3-210ENST00000588109 GGCXP38435 758 aa7.1□□□□□ -1.27
LIG3-210ENST00000588109 MTHFSP49914 203 aa7.1□□□□□ -1.27
LIG3-210ENST00000588109 RRS1Q15050 365 aaKnown RBP7.1□□□□□ -1.27
LIG3-210ENST00000588109 IFFO2Q5TF58 517 aa7.1□□□□□ -1.27
LIG3-210ENST00000588109 TBC1D2Q9BYX2 928 aa7.1□□□□□ -1.27
LIG3-210ENST00000588109 SLC27A5Q9Y2P5 690 aa7.1□□□□□ -1.27
LIG3-210ENST00000588109 MARF1Q9Y4F3 1742 aaKnown RBP7.1□□□□□ -1.27
LIG3-210ENST00000588109 AATKQ6ZMQ8 1374 aa7.09□□□□□ -1.27
LIG3-210ENST00000588109 COL16A1Q07092 1604 aaPredicted RBP7.09□□□□□ -1.27
LIG3-210ENST00000588109 USP19O94966 1318 aa7.09□□□□□ -1.27
LIG3-210ENST00000588109 HOXA2O43364 376 aa7.09□□□□□ -1.27
LIG3-210ENST00000588109 GCP02774 474 aa7.09□□□□□ -1.27
LIG3-210ENST00000588109 FDX1P10109 184 aa7.09□□□□□ -1.27
LIG3-210ENST00000588109 FBLN1P23142 703 aa7.09□□□□□ -1.27
LIG3-210ENST00000588109 AMPHP49418 695 aa7.09□□□□□ -1.27
LIG3-210ENST00000588109 BRPF1P55201 1214 aaPredicted RBP7.09□□□□□ -1.27
LIG3-210ENST00000588109 CABLES1Q8TDN4 633 aa7.09□□□□□ -1.27
LIG3-210ENST00000588109 SPSB2Q99619 263 aa7.09□□□□□ -1.27
LIG3-210ENST00000588109 SLIT3O75094 1523 aa7.09□□□□□ -1.27
LIG3-210ENST00000588109 PHRF1Q9P1Y6 1649 aaKnown RBP7.09□□□□□ -1.28
LIG3-210ENST00000588109 MAP2P11137 1827 aaKnown RBP7.08□□□□□ -1.28
LIG3-210ENST00000588109 MED1Q15648 1581 aaPredicted RBP7.08□□□□□ -1.28
LIG3-210ENST00000588109 MAP3K19Q56UN5 1328 aa7.08□□□□□ -1.28
LIG3-210ENST00000588109 MOXD2PA6NHM9 499 aa7.08□□□□□ -1.28
LIG3-210ENST00000588109 WDR43Q15061 677 aaKnown RBP eCLIP7.08□□□□□ -1.28
LIG3-210ENST00000588109 CCDC184Q52MB2 194 aa7.08□□□□□ -1.28
LIG3-210ENST00000588109 IL27Q8NEV9 243 aa7.08□□□□□ -1.28
LIG3-210ENST00000588109 NKX2-3Q8TAU0 364 aa7.08□□□□□ -1.28
LIG3-210ENST00000588109 FAM117AQ9C073 453 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms