RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 USPL1Q5W0Q7 1092 aa15.2■□□□□ 0.02
VPS4B-202ENST00000588059 MRC1P22897 1456 aa15.2■□□□□ 0.02
VPS4B-202ENST00000588059 LMNB1P20700 586 aa15.19■□□□□ 0.02
VPS4B-202ENST00000588059 GLTPD2A6NH11 291 aa15.18■□□□□ 0.02
VPS4B-202ENST00000588059 ZPR1O75312 459 aa15.18■□□□□ 0.02
VPS4B-202ENST00000588059 HSPA1AP0DMV8 641 aaKnown RBP15.18■□□□□ 0.02
VPS4B-202ENST00000588059 HSPA1BP0DMV9 641 aaKnown RBP15.18■□□□□ 0.02
VPS4B-202ENST00000588059 VEGFAP15692 232 aaPredicted RBP15.18■□□□□ 0.02
VPS4B-202ENST00000588059 DNAJC10Q8IXB1 793 aa15.18■□□□□ 0.02
VPS4B-202ENST00000588059 COL15A1P39059 1388 aa15.17■□□□□ 0.02
VPS4B-202ENST00000588059 NFIXQ14938 502 aa15.17■□□□□ 0.02
VPS4B-202ENST00000588059 POLR3GLQ9BT43 218 aa15.17■□□□□ 0.02
VPS4B-202ENST00000588059 DICER1Q9UPY3 1922 aaKnown RBP15.17■□□□□ 0.02
VPS4B-202ENST00000588059 ANKRD31Q8N7Z5 1873 aa15.16■□□□□ 0.02
VPS4B-202ENST00000588059 CARMIL3Q8ND23 1372 aa15.16■□□□□ 0.02
VPS4B-202ENST00000588059 SULT6B1Q6IMI4 303 aa15.16■□□□□ 0.02
VPS4B-202ENST00000588059 NARFQ9UHQ1 456 aa15.16■□□□□ 0.02
VPS4B-202ENST00000588059 COL11A2P13942 1736 aaPredicted RBP15.15■□□□□ 0.02
VPS4B-202ENST00000588059 NFKBIEO00221 500 aa15.15■□□□□ 0.02
VPS4B-202ENST00000588059 CYP19A1P11511 503 aaPredicted RBP15.15■□□□□ 0.02
VPS4B-202ENST00000588059 TTLL6Q8N841 843 aa15.15■□□□□ 0.02
VPS4B-202ENST00000588059 SLC52A2Q9HAB3 445 aa15.15■□□□□ 0.02
VPS4B-202ENST00000588059 BCL2L12Q9HB09 334 aa15.15■□□□□ 0.02
VPS4B-202ENST00000588059 UBR2Q8IWV8 1755 aa15.15■□□□□ 0.02
VPS4B-202ENST00000588059 FER1L6Q2WGJ9 1857 aa15.14■□□□□ 0.01
VPS4B-202ENST00000588059 SERPINB2P05120 415 aa15.14■□□□□ 0.01
VPS4B-202ENST00000588059 ZBTB1Q9Y2K1 713 aa15.14■□□□□ 0.01
VPS4B-202ENST00000588059 POTECB2RU33 542 aa15.13■□□□□ 0.01
VPS4B-202ENST00000588059 AKAP4Q5JQC9 854 aa15.13■□□□□ 0.01
VPS4B-202ENST00000588059 C2CD5Q86YS7 1000 aa15.13■□□□□ 0.01
VPS4B-202ENST00000588059 PANK3Q9H999 370 aa15.13■□□□□ 0.01
VPS4B-202ENST00000588059 SCN7AQ01118 1682 aa15.12■□□□□ 0.01
VPS4B-202ENST00000588059 IL13P35225 146 aa15.12■□□□□ 0.01
VPS4B-202ENST00000588059 SLC39A6Q13433 755 aa15.12■□□□□ 0.01
VPS4B-202ENST00000588059 LGR6Q9HBX8 967 aa15.12■□□□□ 0.01
VPS4B-202ENST00000588059 CACNA1SQ13698 1873 aa15.1■□□□□ 0.01
VPS4B-202ENST00000588059 H0YIN7 160 aa15.1■□□□□ 0.01
VPS4B-202ENST00000588059 RNMTO43148 476 aaKnown RBP15.1■□□□□ 0.01
VPS4B-202ENST00000588059 MORC1Q86VD1 984 aa15.1■□□□□ 0.01
VPS4B-202ENST00000588059 ARFGEF2Q9Y6D5 1785 aa15.08■□□□□ 0.01
VPS4B-202ENST00000588059 DPY19L2Q6NUT2 758 aa15.08■□□□□ 0
VPS4B-202ENST00000588059 VSIG10Q8N0Z9 540 aa15.08■□□□□ 0
VPS4B-202ENST00000588059 CANXP27824 592 aaKnown RBP15.07■□□□□ 0
VPS4B-202ENST00000588059 ERFEQ4G0M1 354 aa15.07■□□□□ 0
VPS4B-202ENST00000588059 BICDL1Q6ZP65 573 aa15.07■□□□□ 0
VPS4B-202ENST00000588059 PCGF6Q9BYE7 350 aa15.07■□□□□ 0
VPS4B-202ENST00000588059 CREBZFQ9NS37 354 aa15.07■□□□□ 0
VPS4B-202ENST00000588059 TIMELESSQ9UNS1 1208 aa15.07■□□□□ 0
VPS4B-202ENST00000588059 SLX4Q8IY92 1834 aa15.07■□□□□ 0
VPS4B-202ENST00000588059 C21orf2O43822 256 aa15.06■□□□□ 0
VPS4B-202ENST00000588059 EIF5P55010 431 aaKnown RBP15.06■□□□□ 0
VPS4B-202ENST00000588059 TBC1D9BQ66K14 1250 aa15.06■□□□□ 0
VPS4B-202ENST00000588059 ZNF622Q969S3 477 aaKnown RBP eCLIP15.06■□□□□ 0
VPS4B-202ENST00000588059 MKRN1Q9UHC7 482 aaKnown RBP15.06■□□□□ 0
VPS4B-202ENST00000588059 SIPA1L3O60292 1781 aaPredicted RBP15.06■□□□□ 0
VPS4B-202ENST00000588059 POTEIP0CG38 1075 aa15.05■□□□□ -0
VPS4B-202ENST00000588059 POTEJP0CG39 1038 aa15.05■□□□□ -0
VPS4B-202ENST00000588059 CHADLQ6NUI6 762 aa15.05■□□□□ -0
VPS4B-202ENST00000588059 BRIP1Q9BX63 1249 aa15.05■□□□□ -0
VPS4B-202ENST00000588059 ZNF219Q9P2Y4 722 aaPredicted RBP15.05■□□□□ -0
VPS4B-202ENST00000588059 PDZRN3Q9UPQ7 1066 aa15.05■□□□□ -0
VPS4B-202ENST00000588059 LTBP3Q9NS15 1303 aa15.05■□□□□ -0
VPS4B-202ENST00000588059 BCORQ6W2J9 1755 aa15.05■□□□□ -0
VPS4B-202ENST00000588059 HMOX1P09601 288 aa15.04■□□□□ -0
VPS4B-202ENST00000588059 HSPA5P11021 654 aaKnown RBP15.04■□□□□ -0
VPS4B-202ENST00000588059 PDE6BP35913 854 aa15.04■□□□□ -0
VPS4B-202ENST00000588059 MTHFSDQ2M296 383 aaKnown RBP15.04■□□□□ -0
VPS4B-202ENST00000588059 PRR5LQ6MZQ0 368 aa15.04■□□□□ -0
VPS4B-202ENST00000588059 SCN4AP35499 1836 aa15.03■□□□□ -0
VPS4B-202ENST00000588059 CNTNAP1P78357 1384 aa15.03■□□□□ -0
VPS4B-202ENST00000588059 A0A087WZG4 1122 aa15.03■□□□□ -0
VPS4B-202ENST00000588059 DDNO94850 711 aaPredicted RBP15.03■□□□□ -0
VPS4B-202ENST00000588059 STARD3NLO95772 234 aa15.03■□□□□ -0
VPS4B-202ENST00000588059 EIF4G2P78344 907 aaKnown RBP eCLIP15.03■□□□□ -0
VPS4B-202ENST00000588059 CCDC24Q8N4L8 307 aa15.03■□□□□ -0
VPS4B-202ENST00000588059 TAOK3Q9H2K8 898 aa15.03■□□□□ -0
VPS4B-202ENST00000588059 FOXN1O15353 648 aa15.02■□□□□ -0
VPS4B-202ENST00000588059 KNSTRNQ9Y448 316 aa15.02■□□□□ -0
VPS4B-202ENST00000588059 PASKQ96RG2 1323 aa15.01□□□□□ -0.01
VPS4B-202ENST00000588059 AMER1Q5JTC6 1135 aaPredicted RBP15.01□□□□□ -0.01
VPS4B-202ENST00000588059 TTC5Q8N0Z6 440 aa15.01□□□□□ -0.01
VPS4B-202ENST00000588059 HEG1Q9ULI3 1381 aa15□□□□□ -0.01
VPS4B-202ENST00000588059 PRPF40BQ6NWY9 871 aaKnown RBP15□□□□□ -0.01
VPS4B-202ENST00000588059 ZNF496Q96IT1 587 aaPredicted RBP15□□□□□ -0.01
VPS4B-202ENST00000588059 TBC1D2BQ9UPU7 963 aa15□□□□□ -0.01
VPS4B-202ENST00000588059 ADAMTSL1Q8N6G6 1762 aa14.99□□□□□ -0.01
VPS4B-202ENST00000588059 SRGNP10124 158 aa14.99□□□□□ -0.01
VPS4B-202ENST00000588059 IL6STP40189 918 aaPredicted RBP14.99□□□□□ -0.01
VPS4B-202ENST00000588059 STYK1Q6J9G0 422 aa14.99□□□□□ -0.01
VPS4B-202ENST00000588059 CNBD1Q8NA66 436 aa14.99□□□□□ -0.01
VPS4B-202ENST00000588059 CNKSR1Q969H4 720 aa14.99□□□□□ -0.01
VPS4B-202ENST00000588059 L3MBTL3Q96JM7 780 aaPredicted RBP14.99□□□□□ -0.01
VPS4B-202ENST00000588059 PRDM10Q9NQV6 1147 aa14.99□□□□□ -0.01
VPS4B-202ENST00000588059 ZNF330Q9Y3S2 320 aaPredicted RBP14.99□□□□□ -0.01
VPS4B-202ENST00000588059 IQCA1LA6NCM1 817 aa14.98□□□□□ -0.01
VPS4B-202ENST00000588059 CAMTA2O94983 1202 aa14.98□□□□□ -0.01
VPS4B-202ENST00000588059 SOGA3Q5TF21 947 aa14.98□□□□□ -0.01
VPS4B-202ENST00000588059 ZNF790Q6PG37 636 aa14.98□□□□□ -0.01
VPS4B-202ENST00000588059 LDHDQ86WU2 507 aa14.98□□□□□ -0.01
VPS4B-202ENST00000588059 TAF1DQ9H5J8 278 aaPredicted RBP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms