RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 TMC2Q8TDI7 906 aa10.76□□□□□ -0.69
SMAD4-204ENST00000586253 PRKRIP1Q9H875 184 aaPredicted RBP10.76□□□□□ -0.69
SMAD4-204ENST00000586253 TSHZ2Q9NRE2 1034 aa10.76□□□□□ -0.69
SMAD4-204ENST00000586253 PBX2P40425 430 aa10.75□□□□□ -0.69
SMAD4-204ENST00000586253 CCDC125Q86Z20 511 aa10.75□□□□□ -0.69
SMAD4-204ENST00000586253 HS6ST3Q8IZP7 471 aa10.75□□□□□ -0.69
SMAD4-204ENST00000586253 MARCH10Q8NA82 808 aaPredicted RBP10.75□□□□□ -0.69
SMAD4-204ENST00000586253 ZCRB1Q8TBF4 217 aaKnown RBP10.75□□□□□ -0.69
SMAD4-204ENST00000586253 PTCD2Q8WV60 388 aaKnown RBP10.75□□□□□ -0.69
SMAD4-204ENST00000586253 SULT6B1Q6IMI4 303 aa10.74□□□□□ -0.69
SMAD4-204ENST00000586253 UPF1Q92900 1129 aaKnown RBP eCLIP10.74□□□□□ -0.69
SMAD4-204ENST00000586253 NUDCQ9Y266 331 aa10.74□□□□□ -0.69
SMAD4-204ENST00000586253 PCDH11XQ9BZA7 1347 aa10.74□□□□□ -0.69
SMAD4-204ENST00000586253 PCDH11YQ9BZA8 1340 aa10.74□□□□□ -0.69
SMAD4-204ENST00000586253 FOXK1P85037 733 aa10.73□□□□□ -0.69
SMAD4-204ENST00000586253 SPG7Q9UQ90 795 aa10.73□□□□□ -0.69
SMAD4-204ENST00000586253 SBF2Q86WG5 1849 aa10.72□□□□□ -0.69
SMAD4-204ENST00000586253 AMOTQ4VCS5 1084 aa10.72□□□□□ -0.69
SMAD4-204ENST00000586253 FAM182BQ5T319 152 aa10.72□□□□□ -0.69
SMAD4-204ENST00000586253 AEBP1Q8IUX7 1158 aa10.72□□□□□ -0.69
SMAD4-204ENST00000586253 U2SURPO15042 1029 aaKnown RBP10.71□□□□□ -0.69
SMAD4-204ENST00000586253 ANP32CO43423 234 aa10.71□□□□□ -0.69
SMAD4-204ENST00000586253 PLEKHO1Q53GL0 409 aaPredicted RBP10.71□□□□□ -0.69
SMAD4-204ENST00000586253 DDX54Q8TDD1 881 aaKnown RBP10.71□□□□□ -0.69
SMAD4-204ENST00000586253 TNS1Q9HBL0 1735 aaKnown RBP10.71□□□□□ -0.69
SMAD4-204ENST00000586253 GPHNQ9NQX3 736 aaPredicted RBP10.71□□□□□ -0.69
SMAD4-204ENST00000586253 NHSQ6T4R5 1651 aa10.7□□□□□ -0.7
SMAD4-204ENST00000586253 HMOX1P09601 288 aa10.7□□□□□ -0.7
SMAD4-204ENST00000586253 SF3B2Q13435 895 aaKnown RBP10.7□□□□□ -0.7
SMAD4-204ENST00000586253 NKX1-1Q15270 411 aaPredicted RBP10.7□□□□□ -0.7
SMAD4-204ENST00000586253 CYP27B1O15528 508 aa10.69□□□□□ -0.7
SMAD4-204ENST00000586253 FCHSD2O94868 740 aa10.69□□□□□ -0.7
SMAD4-204ENST00000586253 U2AF1L5P0DN76 240 aaPredicted RBP10.69□□□□□ -0.7
SMAD4-204ENST00000586253 U2AF1Q01081 240 aaKnown RBP eCLIP10.69□□□□□ -0.7
SMAD4-204ENST00000586253 IFNL2Q8IZJ0 200 aa10.69□□□□□ -0.7
SMAD4-204ENST00000586253 RSPH6AQ9H0K4 717 aa10.69□□□□□ -0.7
SMAD4-204ENST00000586253 RGPD3A6NKT7 1758 aaPredicted RBP10.68□□□□□ -0.7
SMAD4-204ENST00000586253 RGPD4Q7Z3J3 1758 aa10.68□□□□□ -0.7
SMAD4-204ENST00000586253 DOT1LQ8TEK3 1739 aa10.68□□□□□ -0.7
SMAD4-204ENST00000586253 TRIM37O94972 964 aa10.68□□□□□ -0.7
SMAD4-204ENST00000586253 HSP90AB1P08238 724 aaKnown RBP10.68□□□□□ -0.7
SMAD4-204ENST00000586253 PHKG2P15735 406 aa10.68□□□□□ -0.7
SMAD4-204ENST00000586253 DSG2Q14126 1118 aa10.68□□□□□ -0.7
SMAD4-204ENST00000586253 PLPP6Q8IY26 295 aa10.68□□□□□ -0.7
SMAD4-204ENST00000586253 TPRNQ4KMQ1 711 aa10.67□□□□□ -0.7
SMAD4-204ENST00000586253 ZNF530Q6P9A1 599 aaPredicted RBP10.67□□□□□ -0.7
SMAD4-204ENST00000586253 PNNQ9H307 717 aaKnown RBP10.67□□□□□ -0.7
SMAD4-204ENST00000586253 KAT6BQ8WYB5 2073 aa10.66□□□□□ -0.7
SMAD4-204ENST00000586253 PRKAR2BP31323 418 aa10.66□□□□□ -0.7
SMAD4-204ENST00000586253 BAG6P46379 1132 aa10.66□□□□□ -0.7
SMAD4-204ENST00000586253 C1orf141Q5JVX7 400 aa10.66□□□□□ -0.7
SMAD4-204ENST00000586253 GAS2L2Q8NHY3 880 aa10.66□□□□□ -0.7
SMAD4-204ENST00000586253 DCAF5Q96JK2 942 aa10.66□□□□□ -0.7
SMAD4-204ENST00000586253 TOGARAM1Q9Y4F4 1720 aa10.66□□□□□ -0.7
SMAD4-204ENST00000586253 BTAF1O14981 1849 aa10.65□□□□□ -0.7
SMAD4-204ENST00000586253 ARHGAP33O14559 1287 aa10.65□□□□□ -0.7
SMAD4-204ENST00000586253 PLSCR1O15162 318 aa10.65□□□□□ -0.7
SMAD4-204ENST00000586253 AKAP4Q5JQC9 854 aa10.65□□□□□ -0.7
SMAD4-204ENST00000586253 ACSBG1Q96GR2 724 aa10.65□□□□□ -0.7
SMAD4-204ENST00000586253 ADAMTS7Q9UKP4 1686 aa10.64□□□□□ -0.71
SMAD4-204ENST00000586253 ITGB4P16144 1822 aa10.64□□□□□ -0.71
SMAD4-204ENST00000586253 ERVV-2B6SEH9 535 aa10.64□□□□□ -0.71
SMAD4-204ENST00000586253 KCNQ2O43526 872 aa10.64□□□□□ -0.71
SMAD4-204ENST00000586253 APBA3O96018 575 aa10.64□□□□□ -0.71
SMAD4-204ENST00000586253 NEFMP07197 916 aa10.64□□□□□ -0.71
SMAD4-204ENST00000586253 PRIM1P49642 420 aaKnown RBP10.64□□□□□ -0.71
SMAD4-204ENST00000586253 WDR43Q15061 677 aaKnown RBP eCLIP10.64□□□□□ -0.71
SMAD4-204ENST00000586253 MTHFSDQ2M296 383 aaKnown RBP10.64□□□□□ -0.71
SMAD4-204ENST00000586253 PLEKHF1Q96S99 279 aa10.64□□□□□ -0.71
SMAD4-204ENST00000586253 KDM6AO15550 1401 aaPredicted RBP10.64□□□□□ -0.71
SMAD4-204ENST00000586253 SCN11AQ9UI33 1791 aa10.64□□□□□ -0.71
SMAD4-204ENST00000586253 HRO43593 1189 aa10.63□□□□□ -0.71
SMAD4-204ENST00000586253 DMRTA1Q5VZB9 504 aa10.63□□□□□ -0.71
SMAD4-204ENST00000586253 ADGRD1Q6QNK2 874 aa10.63□□□□□ -0.71
SMAD4-204ENST00000586253 PTF1AQ7RTS3 328 aa10.63□□□□□ -0.71
SMAD4-204ENST00000586253 SYTL4Q96C24 671 aaPredicted RBP10.63□□□□□ -0.71
SMAD4-204ENST00000586253 PHACTR3Q96KR7 559 aa10.63□□□□□ -0.71
SMAD4-204ENST00000586253 CAMKK2Q96RR4 588 aa10.63□□□□□ -0.71
SMAD4-204ENST00000586253 MAP3K5Q99683 1374 aa10.63□□□□□ -0.71
SMAD4-204ENST00000586253 PSDA5PKW4 1024 aaPredicted RBP10.62□□□□□ -0.71
SMAD4-204ENST00000586253 DEFB132Q7Z7B7 95 aa10.62□□□□□ -0.71
SMAD4-204ENST00000586253 VIRMAQ69YN4 1812 aaKnown RBP10.62□□□□□ -0.71
SMAD4-204ENST00000586253 RREB1Q92766 1687 aa10.62□□□□□ -0.71
SMAD4-204ENST00000586253 MRC1P22897 1456 aa10.61□□□□□ -0.71
SMAD4-204ENST00000586253 MAPK8IP3Q9UPT6 1336 aa10.61□□□□□ -0.71
SMAD4-204ENST00000586253 GNAT3A8MTJ3 354 aa10.61□□□□□ -0.71
SMAD4-204ENST00000586253 EN1Q05925 392 aaPredicted RBP10.61□□□□□ -0.71
SMAD4-204ENST00000586253 MPRIPQ6WCQ1 1025 aa10.61□□□□□ -0.71
SMAD4-204ENST00000586253 TMOD3Q9NYL9 352 aa10.61□□□□□ -0.71
SMAD4-204ENST00000586253 RNMTO43148 476 aaKnown RBP10.6□□□□□ -0.71
SMAD4-204ENST00000586253 HTATSF1O43719 755 aaKnown RBP10.6□□□□□ -0.71
SMAD4-204ENST00000586253 PSEN2P49810 448 aa10.6□□□□□ -0.71
SMAD4-204ENST00000586253 EZH2Q15910 746 aaKnown RBP10.6□□□□□ -0.71
SMAD4-204ENST00000586253 CCDC184Q52MB2 194 aa10.6□□□□□ -0.71
SMAD4-204ENST00000586253 DIEXFQ68CQ4 756 aaKnown RBP10.6□□□□□ -0.71
SMAD4-204ENST00000586253 PIGBQ92521 554 aa10.6□□□□□ -0.71
SMAD4-204ENST00000586253 SMARCC1Q92922 1105 aaPredicted RBP10.6□□□□□ -0.71
SMAD4-204ENST00000586253 RUNDC1Q96C34 613 aa10.6□□□□□ -0.71
SMAD4-204ENST00000586253 MRS2Q9HD23 443 aa10.6□□□□□ -0.71
SMAD4-204ENST00000586253 ADAMTS8Q9UP79 889 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms