RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 NFE2L2Q16236 605 aa20.16■□□□□ 0.82
CLIP3-202ENST00000585466 YY1P25490 414 aa20.15■□□□□ 0.82
CLIP3-202ENST00000585466 FKBP8Q14318 412 aa20.15■□□□□ 0.82
CLIP3-202ENST00000585466 RTF1Q92541 710 aaKnown RBP20.15■□□□□ 0.82
CLIP3-202ENST00000585466 SCN7AQ01118 1682 aa20.14■□□□□ 0.81
CLIP3-202ENST00000585466 DDR1Q08345 913 aa20.14■□□□□ 0.81
CLIP3-202ENST00000585466 FMNL2Q96PY5 1086 aa20.14■□□□□ 0.81
CLIP3-202ENST00000585466 BCL2L12Q9HB09 334 aa20.14■□□□□ 0.81
CLIP3-202ENST00000585466 NRXN2Q9P2S2 1712 aa20.13■□□□□ 0.81
CLIP3-202ENST00000585466 PXDNLA1KZ92 1463 aa20.13■□□□□ 0.81
CLIP3-202ENST00000585466 DCAF8L1A6NGE4 600 aa20.13■□□□□ 0.81
CLIP3-202ENST00000585466 EIF5P55010 431 aaKnown RBP20.13■□□□□ 0.81
CLIP3-202ENST00000585466 BRCA1P38398 1863 aaKnown RBP20.13■□□□□ 0.81
CLIP3-202ENST00000585466 N4BP2Q86UW6 1770 aaPredicted RBP20.13■□□□□ 0.81
CLIP3-202ENST00000585466 AFDNP55196 1824 aaKnown RBP20.12■□□□□ 0.81
CLIP3-202ENST00000585466 PRAMEF22A3QJZ6 481 aa20.12■□□□□ 0.81
CLIP3-202ENST00000585466 NARFQ9UHQ1 456 aa20.12■□□□□ 0.81
CLIP3-202ENST00000585466 LAMB4A4D0S4 1761 aa20.12■□□□□ 0.81
CLIP3-202ENST00000585466 STARD3NLO95772 234 aa20.11■□□□□ 0.81
CLIP3-202ENST00000585466 TM4SF1P30408 202 aa20.11■□□□□ 0.81
CLIP3-202ENST00000585466 GPR162Q16538 588 aa20.11■□□□□ 0.81
CLIP3-202ENST00000585466 USPL1Q5W0Q7 1092 aa20.11■□□□□ 0.81
CLIP3-202ENST00000585466 THUMPD2Q9BTF0 503 aaKnown RBP20.11■□□□□ 0.81
CLIP3-202ENST00000585466 BCORQ6W2J9 1755 aa20.11■□□□□ 0.81
CLIP3-202ENST00000585466 CANXP27824 592 aaKnown RBP20.1■□□□□ 0.81
CLIP3-202ENST00000585466 TAF7Q15545 349 aaPredicted RBP20.1■□□□□ 0.81
CLIP3-202ENST00000585466 TEX13AQ9BXU3 409 aaPredicted RBP20.1■□□□□ 0.81
CLIP3-202ENST00000585466 USP16Q9Y5T5 823 aa20.1■□□□□ 0.81
CLIP3-202ENST00000585466 A1BGP04217 495 aa20.09■□□□□ 0.81
CLIP3-202ENST00000585466 MIS18AQ9NYP9 233 aa20.09■□□□□ 0.81
CLIP3-202ENST00000585466 MAPK8IP3Q9UPT6 1336 aa20.08■□□□□ 0.81
CLIP3-202ENST00000585466 POLRMTO00411 1230 aaKnown RBP20.08■□□□□ 0.81
CLIP3-202ENST00000585466 PNNQ9H307 717 aaKnown RBP20.08■□□□□ 0.81
CLIP3-202ENST00000585466 NEFMP07197 916 aa20.07■□□□□ 0.8
CLIP3-202ENST00000585466 TMPOP42166 694 aaKnown RBP20.07■□□□□ 0.8
CLIP3-202ENST00000585466 ZPR1O75312 459 aa20.06■□□□□ 0.8
CLIP3-202ENST00000585466 SNRPA1P09661 255 aaKnown RBP20.06■□□□□ 0.8
CLIP3-202ENST00000585466 IL6STP40189 918 aaPredicted RBP20.06■□□□□ 0.8
CLIP3-202ENST00000585466 NFIXQ14938 502 aa20.06■□□□□ 0.8
CLIP3-202ENST00000585466 PELP1Q8IZL8 1130 aaKnown RBP20.06■□□□□ 0.8
CLIP3-202ENST00000585466 PARP3Q9Y6F1 533 aa20.06■□□□□ 0.8
CLIP3-202ENST00000585466 CCDC146Q8IYE0 955 aa20.05■□□□□ 0.8
CLIP3-202ENST00000585466 ADAMTS8Q9UP79 889 aa20.05■□□□□ 0.8
CLIP3-202ENST00000585466 ZNF316A6NFI3 1004 aaPredicted RBP20.04■□□□□ 0.8
CLIP3-202ENST00000585466 NBPF26B4DH59 902 aa20.04■□□□□ 0.8
CLIP3-202ENST00000585466 PIP4K2AP48426 406 aaPredicted RBP20.04■□□□□ 0.8
CLIP3-202ENST00000585466 RIPK4P57078 832 aa20.04■□□□□ 0.8
CLIP3-202ENST00000585466 NBPF10Q6P3W6 841 aaKnown RBP20.04■□□□□ 0.8
CLIP3-202ENST00000585466 NBPF15Q8N660 670 aa20.04■□□□□ 0.8
CLIP3-202ENST00000585466 KCNA3P22001 575 aa20.03■□□□□ 0.8
CLIP3-202ENST00000585466 EIF4A1P60842 406 aaKnown RBP20.03■□□□□ 0.8
CLIP3-202ENST00000585466 TGFB2P61812 414 aa20.03■□□□□ 0.8
CLIP3-202ENST00000585466 A0A087WZG4 1122 aa20.02■□□□□ 0.8
CLIP3-202ENST00000585466 A0A0G2JLW4 131 aa20.02■□□□□ 0.8
CLIP3-202ENST00000585466 CAMTA2O94983 1202 aa20.02■□□□□ 0.8
CLIP3-202ENST00000585466 CCDC184Q52MB2 194 aa20.02■□□□□ 0.8
CLIP3-202ENST00000585466 PNISRQ8TF01 805 aaKnown RBP20.02■□□□□ 0.8
CLIP3-202ENST00000585466 RUNDC1Q96C34 613 aa20.02■□□□□ 0.8
CLIP3-202ENST00000585466 WWC3Q9ULE0 1092 aa20.02■□□□□ 0.8
CLIP3-202ENST00000585466 TRIM35Q9UPQ4 493 aa20.02■□□□□ 0.8
CLIP3-202ENST00000585466 RRP7AQ9Y3A4 280 aaKnown RBP20.02■□□□□ 0.8
CLIP3-202ENST00000585466 ANKRD31Q8N7Z5 1873 aa20.02■□□□□ 0.8
CLIP3-202ENST00000585466 DLEC1Q9Y238 1755 aa20.01■□□□□ 0.79
CLIP3-202ENST00000585466 GRIN3BO60391 1043 aa20.01■□□□□ 0.79
CLIP3-202ENST00000585466 GIGYF1O75420 1035 aaPredicted RBP20.01■□□□□ 0.79
CLIP3-202ENST00000585466 DPEP1P16444 411 aa20.01■□□□□ 0.79
CLIP3-202ENST00000585466 TBC1D2BQ9UPU7 963 aa20.01■□□□□ 0.79
CLIP3-202ENST00000585466 ARFGEF1Q9Y6D6 1849 aa20.01■□□□□ 0.79
CLIP3-202ENST00000585466 CARMIL3Q8ND23 1372 aa20■□□□□ 0.79
CLIP3-202ENST00000585466 WDR43Q15061 677 aaKnown RBP eCLIP20■□□□□ 0.79
CLIP3-202ENST00000585466 TBC1D9BQ66K14 1250 aa20■□□□□ 0.79
CLIP3-202ENST00000585466 ZNF784Q8NCA9 323 aaPredicted RBP19.98■□□□□ 0.79
CLIP3-202ENST00000585466 ZNF330Q9Y3S2 320 aaPredicted RBP19.98■□□□□ 0.79
CLIP3-202ENST00000585466 SERPINB2P05120 415 aa19.97■□□□□ 0.79
CLIP3-202ENST00000585466 DZIP3Q86Y13 1208 aaKnown RBP19.97■□□□□ 0.79
CLIP3-202ENST00000585466 COL11A2P13942 1736 aaPredicted RBP19.96■□□□□ 0.79
CLIP3-202ENST00000585466 LMOD3Q0VAK6 560 aa19.96■□□□□ 0.79
CLIP3-202ENST00000585466 BABAM1Q9NWV8 329 aa19.96■□□□□ 0.79
CLIP3-202ENST00000585466 ADCY9O60503 1353 aa19.95■□□□□ 0.79
CLIP3-202ENST00000585466 CHRNA5P30532 468 aa19.95■□□□□ 0.78
CLIP3-202ENST00000585466 TSPYL4Q9UJ04 414 aa19.95■□□□□ 0.78
CLIP3-202ENST00000585466 CHL1O00533 1208 aa19.94■□□□□ 0.78
CLIP3-202ENST00000585466 NEUROD2Q15784 382 aa19.94■□□□□ 0.78
CLIP3-202ENST00000585466 BICDL1Q6ZP65 573 aa19.94■□□□□ 0.78
CLIP3-202ENST00000585466 LRP10Q7Z4F1 713 aa19.94■□□□□ 0.78
CLIP3-202ENST00000585466 NUP98P52948 1817 aa19.93■□□□□ 0.78
CLIP3-202ENST00000585466 RGL2O15211 777 aa19.92■□□□□ 0.78
CLIP3-202ENST00000585466 PRR5LQ6MZQ0 368 aa19.92■□□□□ 0.78
CLIP3-202ENST00000585466 CLEC4GQ6UXB4 293 aa19.92■□□□□ 0.78
CLIP3-202ENST00000585466 BCS1LQ9Y276 419 aa19.92■□□□□ 0.78
CLIP3-202ENST00000585466 PDIA6Q15084 440 aa19.91■□□□□ 0.78
CLIP3-202ENST00000585466 APAF1O14727 1248 aa19.9■□□□□ 0.78
CLIP3-202ENST00000585466 HLFQ16534 295 aa19.9■□□□□ 0.78
CLIP3-202ENST00000585466 KRT24Q2M2I5 525 aa19.9■□□□□ 0.78
CLIP3-202ENST00000585466 PIM2Q9P1W9 311 aa19.9■□□□□ 0.78
CLIP3-202ENST00000585466 ERBB4Q15303 1308 aa19.89■□□□□ 0.77
CLIP3-202ENST00000585466 ZNF853P0CG23 659 aa19.88■□□□□ 0.77
CLIP3-202ENST00000585466 PROSER3Q2NL68 480 aa19.88■□□□□ 0.77
CLIP3-202ENST00000585466 TTLL7Q6ZT98 887 aa19.88■□□□□ 0.77
CLIP3-202ENST00000585466 CCDC24Q8N4L8 307 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms